Wall clock time and date at job start Tue Mar 31 2020 18:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34773 * 119.99968 * 2 1 4 4 O 1.21602 * 119.99987 * 359.73127 * 3 2 1 5 5 C 1.47436 * 119.99867 * 180.02562 * 3 2 1 6 6 C 1.39738 * 120.20417 * 359.45088 * 5 3 2 7 7 C 1.37749 * 119.92146 * 179.74873 * 6 5 3 8 8 N 1.48021 * 119.82263 * 180.25595 * 7 6 5 9 9 O 1.21806 * 119.99743 * 180.27498 * 8 7 6 10 10 O 1.21797 * 120.00104 * 0.26917 * 8 7 6 11 11 C 1.38614 * 120.35463 * 0.52892 * 7 6 5 12 12 C 1.37963 * 120.41899 * 359.74419 * 11 7 6 13 13 C 1.38953 * 120.06648 * 359.97438 * 12 11 7 14 14 N 1.38874 * 120.17672 * 180.02562 * 13 12 11 15 15 C 1.47450 * 110.99971 * 299.85237 * 14 13 12 16 16 C 1.54318 * 107.22998 * 123.25618 * 15 14 13 17 17 C 1.55136 * 103.02046 * 22.28291 * 16 15 14 18 18 O 1.42903 * 110.98857 * 82.47671 * 17 16 15 19 19 C 1.50694 * 110.99110 * 206.25259 * 17 16 15 20 20 H 1.08002 * 119.99957 * 118.55144 * 19 17 16 21 21 C 1.37882 * 120.00212 * 298.54425 * 19 17 16 22 22 N 1.31515 * 119.99746 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 120.00241 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47223 * 60.00216 * 23 21 19 25 25 H 1.48496 * 109.47006 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.47269 * 300.00534 * 23 21 19 27 27 C 1.47846 * 110.99926 * 60.69500 * 14 13 12 28 28 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46587 * 299.99661 * 1 2 3 30 30 H 1.08993 * 109.47306 * 59.99553 * 1 2 3 31 31 H 0.96998 * 119.99507 * 180.02562 * 2 1 3 32 32 H 1.07994 * 120.03591 * 359.97438 * 6 5 3 33 33 H 1.07996 * 119.78981 * 179.77158 * 11 7 6 34 34 H 1.08001 * 119.96292 * 179.97438 * 12 11 7 35 35 H 1.08992 * 109.88989 * 242.66552 * 15 14 13 36 36 H 1.09000 * 109.88478 * 3.85478 * 15 14 13 37 37 H 1.08994 * 110.70299 * 140.67115 * 16 15 14 38 38 H 1.08999 * 110.70603 * 263.72640 * 16 15 14 39 39 H 0.96695 * 114.00244 * 61.44976 * 18 17 16 40 40 H 0.96996 * 120.00091 * 179.97438 * 22 21 19 41 41 H 1.09000 * 110.37208 * 332.47056 * 27 14 13 42 42 H 1.08997 * 110.36994 * 94.80620 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2203 -0.0049 5 6 3.6133 1.1671 -0.0006 6 6 4.3163 -0.0405 0.0105 7 6 5.6937 -0.0338 0.0046 8 7 6.4361 -1.3143 0.0106 9 8 7.6542 -1.3121 0.0105 10 8 5.8291 -2.3702 0.0157 11 6 6.3883 1.1657 -0.0011 12 6 5.7088 2.3664 -0.0064 13 6 4.3194 2.3800 -0.0065 14 7 3.6331 3.5873 -0.0123 15 6 3.9676 4.3910 1.1778 16 6 4.5024 5.7490 0.6767 17 6 3.9092 5.8522 -0.7531 18 8 2.5641 6.3333 -0.7157 19 6 4.7674 6.7251 -1.6319 20 1 5.2299 6.3123 -2.5163 21 6 4.9623 8.0509 -1.3070 22 7 4.3994 8.5535 -0.2299 23 14 6.0267 9.1328 -2.3960 24 1 5.4490 9.1797 -3.7632 25 1 6.0770 10.5055 -1.8320 26 1 7.4008 8.5729 -2.4582 27 6 3.9586 4.3760 -1.2197 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.9500 -0.8401 -0.0004 32 1 3.7802 -0.9779 0.0199 33 1 7.4683 1.1604 -0.0019 34 1 6.2575 3.2967 -0.0104 35 1 3.0751 4.5448 1.7842 36 1 4.7341 3.8841 1.7640 37 1 4.1382 6.5620 1.3047 38 1 5.5919 5.7464 0.6455 39 1 2.4737 7.2195 -0.3394 40 1 4.5368 9.4860 -0.0011 41 1 4.9564 4.1248 -1.5794 42 1 3.2177 4.1994 -1.9994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826614671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:40 Heat of formation + Delta-G solvation = -31.799595 kcal Electronic energy + Delta-G solvation = -29560.517885 eV Core-core repulsion = 25316.852122 eV Total energy + Delta-G solvation = -4243.665763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.32596 -40.79049 -39.01049 -37.86647 -36.69686 -35.14645 -34.46764 -32.24095 -32.05507 -31.55014 -29.08833 -28.36382 -27.02200 -26.05427 -24.63638 -24.03183 -22.43430 -20.85819 -20.50079 -19.75764 -19.56724 -18.81549 -17.66338 -17.53767 -17.05696 -16.46578 -16.27753 -15.38825 -15.22062 -14.99385 -14.93762 -14.72430 -13.95167 -13.85895 -13.59726 -13.48706 -12.84937 -12.68604 -12.57342 -12.45931 -12.23942 -11.96043 -11.83537 -11.67509 -11.38747 -11.35550 -11.27795 -11.23122 -10.91258 -10.57526 -10.51914 -10.16370 -9.88311 -9.62087 -9.44788 -9.26604 -9.15235 -8.70911 -8.21655 -7.96692 -6.32062 -4.41583 -0.32324 0.39054 1.14838 1.23746 2.59610 3.02368 3.16414 3.22495 3.24902 3.42687 3.88546 4.12143 4.15989 4.22769 4.61094 4.68043 4.88475 4.95798 5.05721 5.07489 5.28384 5.38778 5.40715 5.52911 5.65860 5.69726 5.75338 5.81434 5.93771 5.99459 6.20974 6.25490 6.28324 6.46072 6.66371 6.84786 7.14805 7.29208 7.32593 7.34888 7.50874 7.57486 7.69598 8.00376 8.25292 8.60511 9.28005 9.42800 10.74764 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.003733 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.788028 B = 7499.697189 C = 9181.250520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.743 5.743 3 C 0.551 3.449 4 O -0.465 6.465 5 C -0.125 4.125 6 C -0.020 4.020 7 C -0.068 4.068 8 N 0.035 4.965 9 O -0.163 6.163 10 O -0.168 6.168 11 C -0.024 4.024 12 C -0.158 4.158 13 C 0.222 3.778 14 N -0.485 5.485 15 C 0.050 3.950 16 C -0.145 4.145 17 C 0.258 3.742 18 O -0.574 6.574 19 C -0.541 4.541 20 H 0.061 0.939 21 C 0.075 3.925 22 N -0.892 5.892 23 Si 0.900 3.100 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.276 1.276 27 C 0.065 3.935 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.396 0.604 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.378 0.622 40 H 0.269 0.731 41 H 0.053 0.947 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 -15.839 2.987 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.398 5.398 3 C 0.336 3.664 4 O -0.336 6.336 5 C -0.130 4.130 6 C -0.041 4.041 7 C -0.151 4.151 8 N 0.553 4.447 9 O -0.379 6.379 10 O -0.382 6.382 11 C -0.044 4.044 12 C -0.179 4.179 13 C 0.124 3.876 14 N -0.206 5.206 15 C -0.075 4.075 16 C -0.184 4.184 17 C 0.217 3.783 18 O -0.382 6.382 19 C -0.580 4.580 20 H 0.079 0.921 21 C -0.128 4.128 22 N -0.531 5.531 23 Si 0.728 3.272 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.059 4.059 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.230 0.770 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.176 0.824 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.227 0.773 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.466 -14.918 2.828 15.383 hybrid contribution 2.096 0.481 -0.249 2.165 sum -0.370 -14.437 2.579 14.671 Atomic orbital electron populations 1.21505 0.79035 1.02003 1.02644 1.45769 1.07924 1.08280 1.77824 1.17727 0.86109 0.84242 0.78340 1.90994 1.68231 1.29874 1.44486 1.19986 0.94438 0.91379 1.07227 1.21032 0.91305 0.99253 0.92474 1.20872 0.92104 0.83810 1.18329 1.43555 1.01226 1.02692 0.97198 1.94543 0.95488 1.94224 1.53606 1.94515 1.70210 1.19669 1.53846 1.21081 1.02083 0.89443 0.91798 1.22168 0.94960 0.98688 1.02132 1.19713 0.89783 0.92994 0.85062 1.61259 1.53433 1.01275 1.04602 1.23020 0.99450 0.94381 0.90673 1.23336 0.99835 0.94281 1.00937 1.19458 0.81169 0.87623 0.90031 1.86193 1.28230 1.37350 1.86385 1.21452 1.30667 0.95338 1.10499 0.92057 1.24979 0.95166 0.97825 0.94868 1.69715 1.43878 1.14961 1.24554 0.86519 0.80602 0.79289 0.80816 1.19977 1.21067 1.20133 1.23236 0.98810 0.93571 0.90306 0.90786 0.92091 0.92021 0.77019 0.82867 0.82642 0.82439 0.90422 0.94101 0.89730 0.92233 0.77296 0.92147 0.92841 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.70 59.85 0.64 1.44 16 2 N -0.74 -7.53 5.66 -68.18 -0.39 -7.92 16 3 C 0.55 7.97 7.76 -12.52 -0.10 7.88 16 4 O -0.47 -8.88 15.03 5.28 0.08 -8.80 16 5 C -0.13 -1.69 5.89 -104.80 -0.62 -2.31 16 6 C -0.02 -0.22 9.04 -39.20 -0.35 -0.58 16 7 C -0.07 -0.81 6.84 -79.98 -0.55 -1.36 16 8 N 0.04 0.46 4.45 33.94 0.15 0.61 16 9 O -0.16 -2.24 18.43 -29.46 -0.54 -2.78 16 10 O -0.17 -2.20 18.43 -29.46 -0.54 -2.75 16 11 C -0.02 -0.28 9.54 -39.54 -0.38 -0.65 16 12 C -0.16 -2.07 7.79 -39.42 -0.31 -2.37 16 13 C 0.22 3.40 4.63 -83.61 -0.39 3.02 16 14 N -0.48 -9.01 3.10 -167.70 -0.52 -9.53 16 15 C 0.05 0.91 6.53 -2.83 -0.02 0.89 16 16 C -0.14 -3.06 5.37 -24.91 -0.13 -3.19 16 17 C 0.26 6.05 0.87 -89.64 -0.08 5.97 16 18 O -0.57 -14.70 13.16 -35.23 -0.46 -15.16 16 19 C -0.54 -13.70 8.27 -34.44 -0.28 -13.99 16 20 H 0.06 1.54 7.79 -52.49 -0.41 1.13 16 21 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 22 N -0.89 -22.73 10.75 55.43 0.60 -22.13 16 23 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 C 0.06 1.34 5.71 -2.30 -0.01 1.33 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.40 2.80 6.86 -40.82 -0.28 2.52 16 32 H 0.15 1.25 5.94 -52.49 -0.31 0.94 16 33 H 0.16 1.49 7.59 -52.49 -0.40 1.09 16 34 H 0.16 2.03 7.70 -52.49 -0.40 1.62 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.04 0.65 7.02 -51.93 -0.36 0.29 16 37 H 0.08 1.93 7.54 -51.93 -0.39 1.54 16 38 H 0.06 1.24 8.04 -51.93 -0.42 0.83 16 39 H 0.38 9.68 7.56 45.56 0.34 10.02 16 40 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.05 1.02 6.65 -51.93 -0.35 0.67 16 42 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -29.78 355.79 -8.18 -37.96 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -4.23 Total: 12.49 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -2.67 Total: -2.13 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.16 Total: -38.97 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -1.47 Total: -29.49 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.78 -8.18 -37.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.159 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds