Wall clock time and date at job start Tue Mar 31 2020 18:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34773 * 119.99968 * 2 1 4 4 O 1.21602 * 119.99987 * 359.73127 * 3 2 1 5 5 C 1.47436 * 119.99867 * 180.02562 * 3 2 1 6 6 C 1.39738 * 120.20417 * 359.45088 * 5 3 2 7 7 C 1.37749 * 119.92146 * 179.74873 * 6 5 3 8 8 N 1.48021 * 119.82263 * 180.25595 * 7 6 5 9 9 O 1.21806 * 119.99743 * 180.27498 * 8 7 6 10 10 O 1.21797 * 120.00104 * 0.26917 * 8 7 6 11 11 C 1.38614 * 120.35463 * 0.52892 * 7 6 5 12 12 C 1.37963 * 120.41899 * 359.74419 * 11 7 6 13 13 C 1.38953 * 120.06648 * 359.97438 * 12 11 7 14 14 N 1.38874 * 120.17672 * 180.02562 * 13 12 11 15 15 C 1.47450 * 110.99971 * 299.85237 * 14 13 12 16 16 C 1.54318 * 107.22998 * 123.25618 * 15 14 13 17 17 C 1.55136 * 103.02046 * 22.28291 * 16 15 14 18 18 O 1.42903 * 110.98857 * 82.47671 * 17 16 15 19 19 C 1.50694 * 110.99110 * 206.25259 * 17 16 15 20 20 H 1.08002 * 119.99957 * 118.55144 * 19 17 16 21 21 C 1.37882 * 120.00212 * 298.54425 * 19 17 16 22 22 N 1.31515 * 119.99746 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 120.00241 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47223 * 60.00216 * 23 21 19 25 25 H 1.48496 * 109.47006 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.47269 * 300.00534 * 23 21 19 27 27 C 1.47846 * 110.99926 * 60.69500 * 14 13 12 28 28 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46587 * 299.99661 * 1 2 3 30 30 H 1.08993 * 109.47306 * 59.99553 * 1 2 3 31 31 H 0.96998 * 119.99507 * 180.02562 * 2 1 3 32 32 H 1.07994 * 120.03591 * 359.97438 * 6 5 3 33 33 H 1.07996 * 119.78981 * 179.77158 * 11 7 6 34 34 H 1.08001 * 119.96292 * 179.97438 * 12 11 7 35 35 H 1.08992 * 109.88989 * 242.66552 * 15 14 13 36 36 H 1.09000 * 109.88478 * 3.85478 * 15 14 13 37 37 H 1.08994 * 110.70299 * 140.67115 * 16 15 14 38 38 H 1.08999 * 110.70603 * 263.72640 * 16 15 14 39 39 H 0.96695 * 114.00244 * 61.44976 * 18 17 16 40 40 H 0.96996 * 120.00091 * 179.97438 * 22 21 19 41 41 H 1.09000 * 110.37208 * 332.47056 * 27 14 13 42 42 H 1.08997 * 110.36994 * 94.80620 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2203 -0.0049 5 6 3.6133 1.1671 -0.0006 6 6 4.3163 -0.0405 0.0105 7 6 5.6937 -0.0338 0.0046 8 7 6.4361 -1.3143 0.0106 9 8 7.6542 -1.3121 0.0105 10 8 5.8291 -2.3702 0.0157 11 6 6.3883 1.1657 -0.0011 12 6 5.7088 2.3664 -0.0064 13 6 4.3194 2.3800 -0.0065 14 7 3.6331 3.5873 -0.0123 15 6 3.9676 4.3910 1.1778 16 6 4.5024 5.7490 0.6767 17 6 3.9092 5.8522 -0.7531 18 8 2.5641 6.3333 -0.7157 19 6 4.7674 6.7251 -1.6319 20 1 5.2299 6.3123 -2.5163 21 6 4.9623 8.0509 -1.3070 22 7 4.3994 8.5535 -0.2299 23 14 6.0267 9.1328 -2.3960 24 1 5.4490 9.1797 -3.7632 25 1 6.0770 10.5055 -1.8320 26 1 7.4008 8.5729 -2.4582 27 6 3.9586 4.3760 -1.2197 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.9500 -0.8401 -0.0004 32 1 3.7802 -0.9779 0.0199 33 1 7.4683 1.1604 -0.0019 34 1 6.2575 3.2967 -0.0104 35 1 3.0751 4.5448 1.7842 36 1 4.7341 3.8841 1.7640 37 1 4.1382 6.5620 1.3047 38 1 5.5919 5.7464 0.6455 39 1 2.4737 7.2195 -0.3394 40 1 4.5368 9.4860 -0.0011 41 1 4.9564 4.1248 -1.5794 42 1 3.2177 4.1994 -1.9994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826614671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:39 Heat of formation + Delta-G solvation = -52.362058 kcal Electronic energy + Delta-G solvation = -29561.409540 eV Core-core repulsion = 25316.852122 eV Total energy + Delta-G solvation = -4244.557418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.33497 -41.95566 -40.27139 -39.15964 -37.71354 -36.74297 -35.57053 -34.20461 -33.16310 -32.76221 -30.49810 -30.05665 -27.90497 -27.36894 -26.24162 -25.00669 -23.64303 -21.94798 -21.87596 -21.48824 -20.55138 -19.82501 -19.22807 -18.65877 -18.20273 -17.77909 -17.39824 -16.92657 -16.70964 -16.25975 -16.10997 -15.98057 -15.59571 -15.08813 -14.74441 -14.62978 -14.19860 -14.11778 -13.79489 -13.60204 -13.51343 -13.28578 -13.18846 -12.99793 -12.94136 -12.72343 -12.65325 -12.40180 -12.31421 -12.30244 -12.26611 -11.92505 -11.19809 -11.09256 -10.63794 -10.61591 -10.46431 -10.12328 -10.08166 -9.37823 -8.23373 -6.39934 -1.35944 -0.58905 0.10086 0.23126 1.41247 1.43798 1.50289 1.56034 2.11328 2.34555 2.37877 2.64340 3.02473 3.19583 3.22133 3.57832 3.65939 3.81443 3.92301 3.97912 4.17288 4.20892 4.25864 4.31051 4.46809 4.52467 4.58964 4.66125 4.74937 4.81858 4.94499 4.98100 5.00056 5.16042 5.24874 5.39375 5.41151 5.50464 5.67412 5.78634 6.12388 6.23024 6.46868 6.51516 6.65398 7.25920 7.32118 7.43754 8.81739 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.003733 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.788028 B = 7499.697189 C = 9181.250520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.723 5.723 3 C 0.548 3.452 4 O -0.524 6.524 5 C -0.129 4.129 6 C 0.001 3.999 7 C -0.067 4.067 8 N 0.035 4.965 9 O -0.180 6.180 10 O -0.158 6.158 11 C -0.009 4.009 12 C -0.156 4.156 13 C 0.194 3.806 14 N -0.493 5.493 15 C 0.060 3.940 16 C -0.131 4.131 17 C 0.239 3.761 18 O -0.589 6.589 19 C -0.562 4.562 20 H 0.057 0.943 21 C 0.036 3.964 22 N -0.909 5.909 23 Si 0.958 3.042 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.268 1.268 27 C 0.077 3.923 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.414 0.586 32 H 0.186 0.814 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.372 0.628 40 H 0.269 0.731 41 H 0.067 0.933 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 -18.351 3.033 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.378 5.378 3 C 0.333 3.667 4 O -0.399 6.399 5 C -0.134 4.134 6 C -0.019 4.019 7 C -0.151 4.151 8 N 0.553 4.447 9 O -0.391 6.391 10 O -0.376 6.376 11 C -0.028 4.028 12 C -0.177 4.177 13 C 0.097 3.903 14 N -0.214 5.214 15 C -0.065 4.065 16 C -0.170 4.170 17 C 0.199 3.801 18 O -0.397 6.397 19 C -0.601 4.601 20 H 0.075 0.925 21 C -0.165 4.165 22 N -0.547 5.547 23 Si 0.783 3.217 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 C -0.048 4.048 28 H 0.135 0.865 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.251 0.749 32 H 0.203 0.797 33 H 0.195 0.805 34 H 0.177 0.823 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.220 0.780 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.200 -17.494 2.878 17.770 hybrid contribution 1.666 1.112 -0.267 2.020 sum 0.466 -16.382 2.611 16.596 Atomic orbital electron populations 1.21673 0.77996 1.04437 1.01452 1.45668 1.08651 1.07842 1.75661 1.17976 0.86540 0.84548 0.77645 1.90974 1.69280 1.32026 1.47611 1.19911 0.94117 0.91634 1.07780 1.21189 0.91032 0.99410 0.90308 1.20960 0.92384 0.83592 1.18115 1.43629 1.01189 1.02841 0.97046 1.94560 0.95726 1.94321 1.54530 1.94511 1.70093 1.19892 1.53135 1.21236 1.03106 0.88562 0.89942 1.22047 0.93838 0.99445 1.02364 1.19792 0.90815 0.92068 0.87634 1.60988 1.54844 1.02083 1.03470 1.22846 0.99414 0.93309 0.90904 1.23086 0.99564 0.95185 0.99212 1.19739 0.80038 0.88924 0.91375 1.86193 1.29989 1.36994 1.86486 1.21718 1.31254 0.96233 1.10846 0.92458 1.25634 0.96168 0.98816 0.95928 1.69812 1.44407 1.15096 1.25416 0.85622 0.79385 0.77756 0.78910 1.20343 1.20787 1.19278 1.22981 0.98729 0.92327 0.90774 0.86458 0.93170 0.93438 0.74885 0.79726 0.80488 0.82346 0.91873 0.91260 0.91990 0.92113 0.77959 0.92137 0.91471 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 10.70 127.77 1.37 2.75 16 2 N -0.72 -13.10 5.66 -487.86 -2.76 -15.86 16 3 C 0.55 15.40 7.76 86.67 0.67 16.07 16 4 O -0.52 -20.48 15.03 -4.04 -0.06 -20.54 16 5 C -0.13 -3.28 5.89 -19.98 -0.12 -3.40 16 6 C 0.00 0.01 9.04 22.52 0.20 0.21 16 7 C -0.07 -1.38 6.84 36.35 0.25 -1.13 16 8 N 0.04 0.80 4.45 -46.52 -0.21 0.60 16 9 O -0.18 -4.43 18.43 18.88 0.35 -4.08 16 10 O -0.16 -3.57 18.43 18.89 0.35 -3.22 16 11 C -0.01 -0.17 9.54 22.29 0.21 0.04 16 12 C -0.16 -3.77 7.79 22.38 0.17 -3.60 16 13 C 0.19 5.76 4.63 38.71 0.18 5.93 16 14 N -0.49 -18.57 3.10 -684.49 -2.12 -20.69 16 15 C 0.06 2.25 6.53 86.65 0.57 2.81 16 16 C -0.13 -5.69 5.37 31.77 0.17 -5.52 16 17 C 0.24 11.58 0.87 -10.16 -0.01 11.57 16 18 O -0.59 -31.61 13.16 -148.98 -1.96 -33.57 16 19 C -0.56 -29.01 8.27 25.60 0.21 -28.79 16 20 H 0.06 2.92 7.79 -2.91 -0.02 2.89 16 21 C 0.04 1.83 5.29 84.66 0.45 2.28 16 22 N -0.91 -47.16 10.75 21.45 0.23 -46.93 16 23 Si 0.96 40.69 29.54 68.60 2.03 42.72 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 C 0.08 3.25 5.71 86.77 0.50 3.75 16 28 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.41 4.33 6.86 -92.71 -0.64 3.70 16 32 H 0.19 2.17 5.94 -2.91 -0.02 2.15 16 33 H 0.18 2.78 7.59 -2.91 -0.02 2.75 16 34 H 0.16 3.82 7.70 -2.91 -0.02 3.80 16 35 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.07 2.15 7.02 -2.39 -0.02 2.13 16 37 H 0.06 2.93 7.54 -2.39 -0.02 2.91 16 38 H 0.06 2.56 8.04 -2.39 -0.02 2.54 16 39 H 0.37 20.09 7.56 -74.06 -0.56 19.53 16 40 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 41 H 0.07 2.58 6.65 -2.39 -0.02 2.57 16 42 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -66.43 355.79 0.57 -65.86 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: -0.10 Total: 32.72 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 4.82 Total: 2.99 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -4.86 Total: -82.88 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -1.33 Total: -61.42 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -66.43 0.57 -65.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.501 kcal (2) G-P(sol) polarization free energy of solvation -66.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds