Wall clock time and date at job start Tue Mar 31 2020 18:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 119.99817 * 2 1 4 4 C 1.53005 * 109.47153 * 274.16284 * 3 2 1 5 5 C 1.50701 * 109.46883 * 184.38807 * 4 3 2 6 6 O 1.20815 * 120.00199 * 359.97438 * 5 4 3 7 7 O 1.34235 * 119.99629 * 179.97438 * 5 4 3 8 8 S 1.65601 * 120.00084 * 180.02562 * 2 1 3 9 9 O 1.42099 * 106.40238 * 150.33530 * 8 2 1 10 10 O 1.42096 * 106.40484 * 17.41212 * 8 2 1 11 11 N 1.65606 * 107.21314 * 263.87411 * 8 2 1 12 12 C 1.46496 * 120.00060 * 62.75594 * 11 8 2 13 13 C 1.53075 * 109.43875 * 93.09614 * 12 11 8 14 14 C 1.53197 * 109.29622 * 181.23716 * 13 12 11 15 15 N 1.46931 * 108.89085 * 305.57972 * 14 13 12 16 16 C 1.36936 * 120.63059 * 233.51349 * 15 14 13 17 17 H 1.07996 * 120.00320 * 146.97086 * 16 15 14 18 18 C 1.38814 * 119.99796 * 326.97558 * 16 15 14 19 19 N 1.31613 * 120.00235 * 347.99724 * 18 16 15 20 20 Si 1.86808 * 119.99783 * 167.99773 * 18 16 15 21 21 H 1.48500 * 109.46896 * 90.00171 * 20 18 16 22 22 H 1.48504 * 109.46923 * 209.99605 * 20 18 16 23 23 H 1.48498 * 109.47078 * 330.00046 * 20 18 16 24 24 C 1.46925 * 118.73845 * 53.53458 * 15 14 13 25 25 C 1.53035 * 109.46065 * 213.29832 * 12 11 8 26 26 H 1.09007 * 109.47137 * 269.99998 * 1 2 3 27 27 H 1.08996 * 109.47664 * 29.99678 * 1 2 3 28 28 H 1.08999 * 109.47346 * 150.00047 * 1 2 3 29 29 H 1.09005 * 109.46825 * 34.15752 * 3 2 1 30 30 H 1.08995 * 109.46995 * 154.15946 * 3 2 1 31 31 H 1.08999 * 109.46672 * 304.38462 * 4 3 2 32 32 H 1.08999 * 109.47367 * 64.37895 * 4 3 2 33 33 H 0.96694 * 116.99449 * 179.97438 * 7 5 4 34 34 H 0.97003 * 119.99992 * 242.75254 * 11 8 2 35 35 H 1.09002 * 109.46318 * 333.27364 * 12 11 8 36 36 H 1.08998 * 109.39331 * 61.36215 * 13 12 11 37 37 H 1.09002 * 109.62327 * 301.24981 * 13 12 11 38 38 H 1.08995 * 109.58998 * 185.71931 * 14 13 12 39 39 H 1.09004 * 109.58632 * 65.43078 * 14 13 12 40 40 H 0.97003 * 120.00376 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.58775 * 66.17980 * 24 15 14 42 42 H 1.08996 * 109.58364 * 186.46266 * 24 15 14 43 43 H 1.08998 * 109.49572 * 58.68050 * 25 12 11 44 44 H 1.09003 * 109.52867 * 298.59623 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3617 1.7628 -1.4387 5 6 3.2071 3.0104 -1.4479 6 8 3.6338 3.4586 -0.4104 7 8 3.4858 3.6236 -2.6091 8 16 2.2930 -1.4341 -0.0006 9 8 3.5194 -1.1891 -0.6752 10 8 1.3673 -2.4318 -0.4090 11 7 2.6842 -1.7748 1.5721 12 6 1.6245 -1.9968 2.5589 13 6 1.3187 -3.4939 2.6500 14 6 0.1891 -3.7194 3.6600 15 7 0.5626 -3.0981 4.9380 16 6 0.5403 -3.8235 6.0992 17 1 1.2561 -3.6145 6.8804 18 6 -0.4025 -4.8276 6.2723 19 7 -1.4153 -4.9302 5.4382 20 14 -0.2335 -6.0332 7.6892 21 1 -0.9457 -5.5016 8.8790 22 1 -0.8246 -7.3391 7.3011 23 1 1.2038 -6.2172 8.0139 24 6 0.9602 -1.6837 4.9464 25 6 2.0835 -1.4811 3.9247 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5137 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6426 2.0086 0.5770 30 1 3.1800 1.1210 0.4479 31 1 2.8476 0.9903 -2.0348 32 1 1.3816 1.9848 -1.8609 33 1 4.0314 4.4207 -2.5645 34 1 3.6151 -1.8275 1.8398 35 1 0.7252 -1.4625 2.2525 36 1 2.2114 -4.0264 2.9779 37 1 1.0117 -3.8650 1.6721 38 1 0.0361 -4.7888 3.8045 39 1 -0.7296 -3.2657 3.2880 40 1 -2.0743 -5.6316 5.5593 41 1 0.1057 -1.0623 4.6780 42 1 1.3136 -1.4094 5.9403 43 1 2.3218 -0.4200 3.8516 44 1 2.9687 -2.0317 4.2433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830742808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:19 Heat of formation + Delta-G solvation = -149.305103 kcal Electronic energy + Delta-G solvation = -28211.884375 eV Core-core repulsion = 24098.567143 eV Total energy + Delta-G solvation = -4113.317232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.60582 -38.06271 -37.27566 -37.04402 -36.32131 -35.82730 -34.60755 -31.90623 -31.71683 -30.00213 -29.15368 -26.99670 -24.84717 -24.31290 -22.21336 -21.94371 -21.41317 -19.78907 -19.14959 -18.50000 -17.86872 -17.54522 -16.97412 -16.79413 -16.34667 -16.14456 -15.29275 -14.75231 -14.47163 -14.39823 -13.97079 -13.84973 -13.54876 -13.38099 -13.12814 -12.99658 -12.93183 -12.81447 -12.59561 -12.14156 -12.05750 -11.91789 -11.88529 -11.77665 -11.43438 -11.33596 -11.06804 -11.01656 -10.97060 -10.75273 -10.50794 -10.27211 -10.22715 -9.88280 -9.61901 -9.43153 -9.04081 -8.48297 -6.62922 -5.80944 -3.29691 0.55229 1.84724 2.52888 2.91661 3.36119 3.43239 3.45054 3.52103 4.29308 4.39451 4.43156 4.47347 4.74947 4.94635 5.03552 5.12636 5.23476 5.34583 5.36301 5.42749 5.52780 5.53907 5.60263 5.65128 5.74931 5.80314 6.05959 6.12269 6.21453 6.24444 6.41128 6.53601 6.65152 6.72511 6.83513 6.89989 7.12344 7.36590 7.51294 7.65158 7.78455 8.46676 9.20196 9.81227 10.40132 11.27576 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.002738 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.769966 B =10222.501183 C =10566.413752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.010 6.010 3 C 0.140 3.860 4 C -0.139 4.139 5 C 0.487 3.513 6 O -0.515 6.515 7 O -0.518 6.518 8 S 2.783 3.217 9 O -0.987 6.987 10 O -0.968 6.968 11 N -1.121 6.121 12 C 0.163 3.837 13 C -0.159 4.159 14 C 0.175 3.825 15 N -0.592 5.592 16 C -0.257 4.257 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.147 3.853 25 C -0.136 4.136 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.411 0.589 34 H 0.413 0.587 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.021 0.979 40 H 0.255 0.745 41 H 0.019 0.981 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.395 15.080 -14.597 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.849 5.849 3 C 0.013 3.987 4 C -0.179 4.179 5 C 0.328 3.672 6 O -0.403 6.403 7 O -0.330 6.330 8 S 2.790 3.210 9 O -0.970 6.970 10 O -0.951 6.951 11 N -0.882 5.882 12 C 0.057 3.943 13 C -0.200 4.200 14 C 0.048 3.952 15 N -0.314 5.314 16 C -0.387 4.387 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.020 3.980 25 C -0.177 4.177 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.270 0.730 34 H 0.246 0.754 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.039 0.961 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.101 14.196 -15.146 21.637 hybrid contribution 0.677 0.164 1.133 1.330 sum 6.778 14.360 -14.013 21.178 Atomic orbital electron populations 1.21699 0.77819 1.04143 1.02901 1.57859 1.15788 1.21530 1.89716 1.20942 0.97823 0.85938 0.93951 1.21890 1.00845 0.93579 1.01567 1.23287 0.78223 0.84844 0.80805 1.90748 1.50572 1.65293 1.33706 1.84538 1.68040 1.44083 1.36301 1.02044 0.72860 0.72890 0.73193 1.93597 1.45240 1.85679 1.72519 1.93633 1.64632 1.55763 1.81102 1.56064 1.16066 1.87135 1.28923 1.20821 0.87528 0.97671 0.88304 1.22774 1.02060 0.94051 1.01079 1.20735 0.91215 1.00167 0.83049 1.44038 1.78827 1.04665 1.03918 1.19118 1.10478 1.13994 0.95097 0.91938 1.25201 0.94919 1.01073 0.98019 1.69979 1.12298 1.33879 1.38354 0.86297 0.77699 0.80667 0.82052 1.21327 1.21549 1.20453 1.20884 0.93432 0.87468 0.96254 1.22349 1.01075 0.99385 0.94941 0.91972 0.90743 0.89487 0.89038 0.89163 0.86622 0.86992 0.73010 0.75357 0.90774 0.92179 0.91729 0.89565 0.96080 0.93519 0.96343 0.92371 0.92563 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.30 59.84 0.62 1.31 16 2 N -1.01 -10.19 3.24 -121.76 -0.39 -10.59 16 3 C 0.14 1.25 4.65 -4.04 -0.02 1.23 16 4 C -0.14 -1.08 6.14 -27.88 -0.17 -1.25 16 5 C 0.49 4.23 8.33 36.01 0.30 4.53 16 6 O -0.52 -5.96 16.69 -18.74 -0.31 -6.27 16 7 O -0.52 -3.37 13.42 -39.27 -0.53 -3.90 16 8 S 2.78 36.89 5.96 -107.50 -0.64 36.25 16 9 O -0.99 -14.59 17.08 -57.17 -0.98 -15.57 16 10 O -0.97 -15.83 15.75 -57.17 -0.90 -16.73 16 11 N -1.12 -14.75 5.54 -4.84 -0.03 -14.77 16 12 C 0.16 2.54 2.66 -67.88 -0.18 2.36 16 13 C -0.16 -3.02 5.70 -26.59 -0.15 -3.17 16 14 C 0.17 4.07 5.24 -3.71 -0.02 4.05 16 15 N -0.59 -14.28 2.97 -172.31 -0.51 -14.79 16 16 C -0.26 -6.88 9.55 -15.06 -0.14 -7.02 16 17 H 0.06 1.64 7.86 -52.49 -0.41 1.23 16 18 C 0.01 0.20 5.00 -17.43 -0.09 0.11 16 19 N -0.90 -25.73 11.26 55.49 0.62 -25.11 16 20 Si 0.90 21.37 29.57 -169.99 -5.03 16.35 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.15 2.88 6.52 -3.71 -0.02 2.86 16 25 C -0.14 -2.15 5.60 -26.61 -0.15 -2.30 16 26 H 0.06 0.55 7.47 -51.93 -0.39 0.16 16 27 H 0.07 0.44 8.07 -51.93 -0.42 0.03 16 28 H 0.09 0.84 7.00 -51.93 -0.36 0.48 16 29 H 0.09 0.71 8.10 -51.93 -0.42 0.28 16 30 H 0.09 0.88 7.64 -51.93 -0.40 0.48 16 31 H 0.12 0.97 7.87 -51.93 -0.41 0.56 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.41 0.99 9.10 45.56 0.41 1.40 16 34 H 0.41 4.77 8.82 -34.48 -0.30 4.47 16 35 H 0.07 1.11 6.97 -51.93 -0.36 0.75 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.22 7.43 -51.93 -0.39 0.83 16 38 H 0.09 2.27 6.29 -51.93 -0.33 1.94 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 370.21 15.07 5.58 5.58 Total: -1.00 -34.88 370.21 -9.00 -43.88 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.86 Total: 2.97 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -0.03 Total: 2.70 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.31 Total: -65.26 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -2.72 Total: -42.47 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: 36.89 SS G_CDS: -0.64 Total: 36.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.88 -9.00 -43.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830742808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.427 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds