Wall clock time and date at job start Tue Mar 31 2020 18:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 119.99817 * 2 1 4 4 C 1.53005 * 109.47153 * 274.16284 * 3 2 1 5 5 C 1.50701 * 109.46883 * 184.38807 * 4 3 2 6 6 O 1.20815 * 120.00199 * 359.97438 * 5 4 3 7 7 O 1.34235 * 119.99629 * 179.97438 * 5 4 3 8 8 S 1.65601 * 120.00084 * 180.02562 * 2 1 3 9 9 O 1.42099 * 106.40238 * 150.33530 * 8 2 1 10 10 O 1.42096 * 106.40484 * 17.41212 * 8 2 1 11 11 N 1.65606 * 107.21314 * 263.87411 * 8 2 1 12 12 C 1.46496 * 120.00060 * 62.75594 * 11 8 2 13 13 C 1.53075 * 109.43875 * 93.09614 * 12 11 8 14 14 C 1.53197 * 109.29622 * 181.23716 * 13 12 11 15 15 N 1.46931 * 108.89085 * 305.57972 * 14 13 12 16 16 C 1.36936 * 120.63059 * 233.51349 * 15 14 13 17 17 H 1.07996 * 120.00320 * 146.97086 * 16 15 14 18 18 C 1.38814 * 119.99796 * 326.97558 * 16 15 14 19 19 N 1.31613 * 120.00235 * 347.99724 * 18 16 15 20 20 Si 1.86808 * 119.99783 * 167.99773 * 18 16 15 21 21 H 1.48500 * 109.46896 * 90.00171 * 20 18 16 22 22 H 1.48504 * 109.46923 * 209.99605 * 20 18 16 23 23 H 1.48498 * 109.47078 * 330.00046 * 20 18 16 24 24 C 1.46925 * 118.73845 * 53.53458 * 15 14 13 25 25 C 1.53035 * 109.46065 * 213.29832 * 12 11 8 26 26 H 1.09007 * 109.47137 * 269.99998 * 1 2 3 27 27 H 1.08996 * 109.47664 * 29.99678 * 1 2 3 28 28 H 1.08999 * 109.47346 * 150.00047 * 1 2 3 29 29 H 1.09005 * 109.46825 * 34.15752 * 3 2 1 30 30 H 1.08995 * 109.46995 * 154.15946 * 3 2 1 31 31 H 1.08999 * 109.46672 * 304.38462 * 4 3 2 32 32 H 1.08999 * 109.47367 * 64.37895 * 4 3 2 33 33 H 0.96694 * 116.99449 * 179.97438 * 7 5 4 34 34 H 0.97003 * 119.99992 * 242.75254 * 11 8 2 35 35 H 1.09002 * 109.46318 * 333.27364 * 12 11 8 36 36 H 1.08998 * 109.39331 * 61.36215 * 13 12 11 37 37 H 1.09002 * 109.62327 * 301.24981 * 13 12 11 38 38 H 1.08995 * 109.58998 * 185.71931 * 14 13 12 39 39 H 1.09004 * 109.58632 * 65.43078 * 14 13 12 40 40 H 0.97003 * 120.00376 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.58775 * 66.17980 * 24 15 14 42 42 H 1.08996 * 109.58364 * 186.46266 * 24 15 14 43 43 H 1.08998 * 109.49572 * 58.68050 * 25 12 11 44 44 H 1.09003 * 109.52867 * 298.59623 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3617 1.7628 -1.4387 5 6 3.2071 3.0104 -1.4479 6 8 3.6338 3.4586 -0.4104 7 8 3.4858 3.6236 -2.6091 8 16 2.2930 -1.4341 -0.0006 9 8 3.5194 -1.1891 -0.6752 10 8 1.3673 -2.4318 -0.4090 11 7 2.6842 -1.7748 1.5721 12 6 1.6245 -1.9968 2.5589 13 6 1.3187 -3.4939 2.6500 14 6 0.1891 -3.7194 3.6600 15 7 0.5626 -3.0981 4.9380 16 6 0.5403 -3.8235 6.0992 17 1 1.2561 -3.6145 6.8804 18 6 -0.4025 -4.8276 6.2723 19 7 -1.4153 -4.9302 5.4382 20 14 -0.2335 -6.0332 7.6892 21 1 -0.9457 -5.5016 8.8790 22 1 -0.8246 -7.3391 7.3011 23 1 1.2038 -6.2172 8.0139 24 6 0.9602 -1.6837 4.9464 25 6 2.0835 -1.4811 3.9247 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5137 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6426 2.0086 0.5770 30 1 3.1800 1.1210 0.4479 31 1 2.8476 0.9903 -2.0348 32 1 1.3816 1.9848 -1.8609 33 1 4.0314 4.4207 -2.5645 34 1 3.6151 -1.8275 1.8398 35 1 0.7252 -1.4625 2.2525 36 1 2.2114 -4.0264 2.9779 37 1 1.0117 -3.8650 1.6721 38 1 0.0361 -4.7888 3.8045 39 1 -0.7296 -3.2657 3.2880 40 1 -2.0743 -5.6316 5.5593 41 1 0.1057 -1.0623 4.6780 42 1 1.3136 -1.4094 5.9403 43 1 2.3218 -0.4200 3.8516 44 1 2.9687 -2.0317 4.2433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830742808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:18 Heat of formation + Delta-G solvation = -177.007399 kcal Electronic energy + Delta-G solvation = -28213.085637 eV Core-core repulsion = 24098.567143 eV Total energy + Delta-G solvation = -4114.518494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24735 -39.55418 -38.38077 -37.80673 -37.01657 -36.94357 -36.19324 -33.68036 -32.38395 -31.62133 -30.78695 -27.69285 -26.69358 -25.03785 -23.80312 -23.56763 -22.05190 -21.15229 -20.34962 -19.20533 -18.93729 -18.71249 -18.32245 -17.68396 -17.34484 -17.01136 -16.77305 -16.22168 -15.54980 -15.29572 -15.26912 -15.18487 -14.78019 -14.70847 -14.52843 -14.34763 -14.00199 -13.73603 -13.45913 -13.30513 -13.20539 -13.14589 -13.00146 -12.81526 -12.67642 -12.61497 -12.55749 -12.52439 -12.15273 -12.03924 -12.01396 -11.82203 -11.67148 -11.62578 -11.20388 -10.59678 -10.34247 -10.20824 -8.58748 -7.85328 -5.36491 -0.48536 1.21363 1.47641 1.49339 1.58248 1.72197 2.18049 2.52190 2.52792 3.30642 3.32637 3.66192 3.71559 3.76924 3.83607 4.09202 4.10630 4.29879 4.35469 4.37002 4.54368 4.58020 4.62679 4.69453 4.73753 4.86310 4.93234 5.01525 5.04297 5.07726 5.15678 5.21399 5.32615 5.41229 5.48404 5.52420 5.63901 5.67970 5.76527 6.10824 6.44897 6.99949 7.18686 7.88231 8.41454 9.20877 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.002738 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.769966 B =10222.501183 C =10566.413752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -1.000 6.000 3 C 0.135 3.865 4 C -0.140 4.140 5 C 0.492 3.508 6 O -0.549 6.549 7 O -0.514 6.514 8 S 2.797 3.203 9 O -1.001 7.001 10 O -1.002 7.002 11 N -1.115 6.115 12 C 0.172 3.828 13 C -0.149 4.149 14 C 0.183 3.817 15 N -0.610 5.610 16 C -0.264 4.264 17 H 0.065 0.935 18 C -0.047 4.047 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.283 1.283 22 H -0.295 1.295 23 H -0.271 1.271 24 C 0.141 3.859 25 C -0.124 4.124 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.140 0.860 33 H 0.429 0.571 34 H 0.422 0.578 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.004 0.996 40 H 0.250 0.750 41 H 0.023 0.977 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.271 17.080 -15.088 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.841 5.841 3 C 0.009 3.991 4 C -0.179 4.179 5 C 0.336 3.664 6 O -0.440 6.440 7 O -0.328 6.328 8 S 2.804 3.196 9 O -0.985 6.985 10 O -0.985 6.985 11 N -0.875 5.875 12 C 0.065 3.935 13 C -0.190 4.190 14 C 0.056 3.944 15 N -0.334 5.334 16 C -0.394 4.394 17 H 0.083 0.917 18 C -0.243 4.243 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.210 1.210 22 H -0.221 1.221 23 H -0.196 1.196 24 C 0.015 3.985 25 C -0.164 4.164 26 H 0.081 0.919 27 H 0.127 0.873 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.158 0.842 33 H 0.290 0.710 34 H 0.257 0.743 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.022 0.978 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.026 16.230 -15.657 23.620 hybrid contribution 0.419 -0.352 1.210 1.328 sum 7.445 15.877 -14.448 22.721 Atomic orbital electron populations 1.21887 0.76679 1.05277 1.03376 1.57557 1.16317 1.20845 1.89425 1.21096 0.97553 0.85396 0.95059 1.21909 1.02173 0.93032 1.00826 1.23382 0.77596 0.84810 0.80651 1.90740 1.51994 1.66362 1.34868 1.84500 1.68162 1.44965 1.35200 1.01432 0.72229 0.73049 0.72841 1.93577 1.46140 1.86013 1.72748 1.93594 1.65422 1.57798 1.81660 1.55845 1.16072 1.87310 1.28323 1.20566 0.88726 0.95067 0.89163 1.22582 1.00024 0.96997 0.99369 1.20472 0.92206 0.97639 0.84071 1.44278 1.79130 1.06657 1.03352 1.19455 1.09974 1.14189 0.95809 0.91706 1.25930 0.94930 1.02967 1.00502 1.70133 1.13166 1.34488 1.40146 0.85316 0.77833 0.78214 0.79288 1.20958 1.22135 1.19580 1.21075 0.94774 0.84845 0.97802 1.22185 0.99174 1.01714 0.93334 0.91868 0.87337 0.90708 0.87291 0.90027 0.87226 0.84248 0.70951 0.74295 0.89721 0.92672 0.91945 0.93433 0.97833 0.94108 0.95913 0.92191 0.88820 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 10.30 127.77 1.32 2.40 16 2 N -1.00 -17.80 3.24 -539.12 -1.75 -19.54 16 3 C 0.13 2.04 4.65 86.38 0.40 2.44 16 4 C -0.14 -1.80 6.14 29.85 0.18 -1.62 16 5 C 0.49 7.46 8.33 71.24 0.59 8.05 16 6 O -0.55 -11.73 16.69 22.00 0.37 -11.37 16 7 O -0.51 -5.46 13.42 -51.47 -0.69 -6.15 16 8 S 2.80 70.05 5.96 -56.49 -0.34 69.72 16 9 O -1.00 -28.18 17.08 -128.00 -2.19 -30.37 16 10 O -1.00 -32.11 15.75 -128.00 -2.02 -34.12 16 11 N -1.11 -27.21 5.54 -169.24 -0.94 -28.15 16 12 C 0.17 5.08 2.66 45.03 0.12 5.20 16 13 C -0.15 -5.66 5.70 30.69 0.17 -5.48 16 14 C 0.18 8.73 5.24 86.36 0.45 9.18 16 15 N -0.61 -29.62 2.97 -699.07 -2.08 -31.70 16 16 C -0.26 -14.22 9.55 84.03 0.80 -13.42 16 17 H 0.07 3.39 7.86 -2.91 -0.02 3.37 16 18 C -0.05 -2.63 5.00 84.86 0.42 -2.20 16 19 N -0.93 -54.91 11.26 21.65 0.24 -54.67 16 20 Si 0.97 44.55 29.57 68.60 2.03 46.58 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 C 0.14 5.34 6.52 86.36 0.56 5.90 16 25 C -0.12 -3.58 5.60 30.67 0.17 -3.41 16 26 H 0.06 0.95 7.47 -2.38 -0.02 0.94 16 27 H 0.11 0.89 8.07 -2.39 -0.02 0.87 16 28 H 0.07 1.34 7.00 -2.39 -0.02 1.33 16 29 H 0.11 1.31 8.10 -2.38 -0.02 1.29 16 30 H 0.08 1.40 7.64 -2.39 -0.02 1.38 16 31 H 0.11 1.60 7.87 -2.39 -0.02 1.58 16 32 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.43 1.08 9.10 -74.06 -0.67 0.41 16 34 H 0.42 8.82 8.82 -96.74 -0.85 7.97 16 35 H 0.08 2.37 6.97 -2.39 -0.02 2.35 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 2.38 7.43 -2.39 -0.02 2.37 16 38 H 0.05 2.61 6.29 -2.39 -0.02 2.60 16 39 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 40 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 43 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 44 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -76.31 370.21 -2.65 -78.96 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.50 Total: 13.78 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.20 Total: 7.04 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -4.52 Total: -134.06 kcal Atomic # 8 Polarization: -77.48 SS G_CDS: -4.53 Total: -82.01 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 70.05 SS G_CDS: -0.34 Total: 69.72 kcal Total: -76.31 -2.65 -78.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830742808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.047 kcal (2) G-P(sol) polarization free energy of solvation -76.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds