Wall clock time and date at job start Tue Mar 31 2020 18:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45195 * 109.46805 * 2 1 4 4 C 1.34226 * 117.00245 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99758 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00714 * 180.02562 * 4 3 2 7 7 H 1.09004 * 109.47037 * 344.99908 * 6 4 3 8 8 F 1.39904 * 109.47164 * 104.99315 * 6 4 3 9 9 C 1.52998 * 109.47330 * 225.00131 * 6 4 3 10 10 C 1.53501 * 114.20675 * 179.97438 * 9 6 4 11 11 N 1.47065 * 87.98598 * 139.65127 * 10 9 6 12 12 C 1.34772 * 136.05891 * 152.84153 * 11 10 9 13 13 O 1.21615 * 119.99901 * 4.91842 * 12 11 10 14 14 C 1.47431 * 120.00419 * 184.64076 * 12 11 10 15 15 C 1.39228 * 120.28043 * 326.64241 * 14 12 11 16 16 C 1.38217 * 120.09012 * 179.74680 * 15 14 12 17 17 C 1.38830 * 120.67747 * 0.54689 * 16 15 14 18 18 C 1.37600 * 120.56846 * 359.70382 * 17 16 15 19 19 C 1.40702 * 119.88054 * 0.02562 * 18 17 16 20 20 C 1.40892 * 120.32630 * 179.97438 * 19 18 17 21 21 H 1.08005 * 120.00204 * 149.58008 * 20 19 18 22 22 C 1.40272 * 120.00142 * 329.57745 * 20 19 18 23 23 N 1.30635 * 120.00142 * 349.97735 * 22 20 19 24 24 Si 1.86793 * 120.00323 * 169.97379 * 22 20 19 25 25 H 1.48500 * 109.47448 * 89.99921 * 24 22 20 26 26 H 1.48504 * 109.47600 * 210.00202 * 24 22 20 27 27 H 1.48502 * 109.47223 * 330.00472 * 24 22 20 28 28 C 1.47073 * 87.88468 * 333.09928 * 11 10 9 29 29 H 1.09008 * 109.46936 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47215 * 299.99773 * 1 2 3 31 31 H 1.08993 * 109.47388 * 60.00228 * 1 2 3 32 32 H 1.09004 * 109.46967 * 240.00285 * 2 1 3 33 33 H 1.09000 * 109.47195 * 120.00091 * 2 1 3 34 34 H 1.08993 * 113.28419 * 46.92440 * 9 6 4 35 35 H 1.08997 * 113.46516 * 24.86820 * 10 9 6 36 36 H 1.08997 * 113.51643 * 254.44483 * 10 9 6 37 37 H 1.07999 * 119.95554 * 0.02562 * 15 14 12 38 38 H 1.08000 * 119.66287 * 180.25737 * 16 15 14 39 39 H 1.07996 * 119.71985 * 179.72453 * 17 16 15 40 40 H 1.08000 * 120.05747 * 180.02562 * 18 17 16 41 41 H 0.96993 * 120.00316 * 179.97438 * 23 22 20 42 42 H 1.09002 * 113.46340 * 141.67585 * 28 11 10 43 43 H 1.08997 * 113.46989 * 272.11535 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.1421 3.6528 -0.2652 8 9 4.4149 3.2372 1.2741 9 6 5.0576 3.0195 -1.0205 10 6 5.7247 4.3991 -1.1100 11 7 7.0182 3.7088 -1.2243 12 6 8.2178 3.9803 -1.7753 13 8 8.4251 5.0699 -2.2742 14 6 9.2807 2.9587 -1.7679 15 6 9.3883 2.0652 -0.7056 16 6 10.3831 1.1056 -0.7052 17 6 11.2912 1.0264 -1.7523 18 6 11.2135 1.8988 -2.8135 19 6 10.2067 2.8813 -2.8410 20 6 10.1188 3.7798 -3.9227 21 1 9.1585 4.1751 -4.2197 22 6 11.2783 4.1610 -4.6139 23 7 12.4543 3.8443 -4.1413 24 14 11.1410 5.1215 -6.2101 25 1 11.1387 6.5766 -5.9137 26 1 12.2964 4.7962 -7.0846 27 1 9.8786 4.7553 -6.9011 28 6 6.4247 2.5888 -0.4783 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 4.8022 2.5834 -1.9861 35 1 5.6263 4.9887 -0.1986 36 1 5.4502 4.9577 -2.0048 37 1 8.6907 2.1190 0.1171 38 1 10.4576 0.4133 0.1204 39 1 12.0651 0.2734 -1.7340 40 1 11.9240 1.8295 -3.6240 41 1 13.2561 4.1076 -4.6194 42 1 6.7438 1.6105 -0.8375 43 1 6.5148 2.6913 0.6031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868559958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:14 Heat of formation + Delta-G solvation = -106.761576 kcal Electronic energy + Delta-G solvation = -28570.352841 eV Core-core repulsion = 24303.516522 eV Total energy + Delta-G solvation = -4266.836320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -48.35601 -40.78340 -39.85261 -37.80593 -36.99858 -36.29086 -33.72531 -32.37030 -31.32604 -30.00254 -29.56171 -27.39717 -25.88983 -25.31321 -23.86824 -22.50025 -21.50536 -20.85707 -20.32566 -18.64792 -18.52085 -17.44272 -17.23534 -17.15804 -16.47680 -16.30533 -15.97743 -15.38179 -14.96071 -14.49788 -14.41037 -14.22115 -14.00694 -13.39722 -13.28107 -13.27279 -13.02699 -12.99026 -12.64682 -12.42467 -12.30673 -12.12985 -12.00785 -11.89794 -11.59634 -11.41145 -11.09791 -11.09191 -10.93765 -10.89366 -10.79631 -10.49542 -10.36441 -9.95680 -9.63468 -9.26089 -8.66293 -8.16062 -7.55029 -7.39753 -6.79106 -4.39946 1.66528 2.03132 2.42502 2.83598 3.08531 3.14564 3.24151 3.34156 3.91438 3.94056 3.96038 4.10058 4.24516 4.43479 4.52789 4.56074 4.63483 4.73613 4.86513 4.97815 5.23463 5.31535 5.36084 5.46822 5.54289 5.57094 5.62233 5.76936 5.89895 5.98483 6.08663 6.13342 6.30189 6.42358 6.75426 6.99826 7.12984 7.23110 7.26112 7.47946 7.69011 7.93323 7.99351 8.17728 8.37603 8.60359 8.79811 8.87176 9.25621 10.14519 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.002793 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.958280 B =10021.539236 C =10594.089736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.442 3.558 5 O -0.474 6.474 6 C 0.126 3.874 7 H 0.123 0.877 8 F -0.177 7.177 9 C -0.157 4.157 10 C 0.117 3.883 11 N -0.652 5.652 12 C 0.605 3.395 13 O -0.532 6.532 14 C -0.255 4.255 15 C -0.056 4.056 16 C -0.247 4.247 17 C -0.093 4.093 18 C -0.154 4.154 19 C 0.147 3.853 20 C -0.420 4.420 21 H 0.086 0.914 22 C 0.073 3.927 23 N -0.790 5.790 24 Si 0.917 3.083 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.260 1.260 28 C 0.117 3.883 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.283 0.717 42 H 0.087 0.913 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.005 -4.991 6.133 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.271 6.271 4 C 0.281 3.719 5 O -0.359 6.359 6 C 0.088 3.912 7 H 0.141 0.859 8 F -0.157 7.157 9 C -0.176 4.176 10 C -0.007 4.007 11 N -0.391 5.391 12 C 0.402 3.598 13 O -0.408 6.408 14 C -0.259 4.259 15 C -0.075 4.075 16 C -0.267 4.267 17 C -0.112 4.112 18 C -0.173 4.173 19 C 0.143 3.857 20 C -0.448 4.448 21 H 0.104 0.896 22 C -0.146 4.146 23 N -0.415 5.415 24 Si 0.741 3.259 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.184 1.184 28 C -0.006 4.006 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.148 -4.612 5.716 20.509 hybrid contribution 0.079 0.193 -0.321 0.382 sum -19.070 -4.420 5.396 20.305 Atomic orbital electron populations 1.21819 0.92344 1.03175 1.03654 1.23130 0.95550 0.79651 1.03058 1.86507 1.23887 1.33108 1.83563 1.24026 0.81245 0.92825 0.73828 1.90745 1.60300 1.42549 1.42260 1.20941 0.97232 0.91868 0.81187 0.85884 1.92918 1.89092 1.93430 1.40308 1.23633 0.93405 1.01164 0.99398 1.22731 0.82214 0.93273 1.02461 1.49633 1.11083 1.20674 1.57692 1.18134 0.78799 0.87368 0.75545 1.90719 1.79255 1.24501 1.46319 1.19323 1.03781 1.03109 0.99735 1.20713 0.96786 0.93903 0.96089 1.20285 1.01338 1.03888 1.01170 1.20814 0.97326 0.98207 0.94823 1.21370 1.01340 0.95475 0.99134 1.17415 0.88517 0.90055 0.89740 1.19736 0.94768 1.20371 1.09934 0.89584 1.26030 0.94649 0.95317 0.98602 1.69705 0.98816 1.36382 1.36570 0.86165 0.78908 0.80304 0.80527 1.19208 1.20138 1.18413 1.22766 0.87307 0.93333 0.97242 0.90045 0.91377 0.91321 0.90774 0.90900 0.85682 0.89964 0.90000 0.89000 0.89108 0.89073 0.85952 0.90631 0.89423 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.29 37.16 0.38 -0.35 16 2 C 0.06 0.44 6.19 37.16 0.23 0.67 16 3 O -0.35 -3.25 10.22 -39.25 -0.40 -3.65 16 4 C 0.44 4.74 7.30 36.00 0.26 5.00 16 5 O -0.47 -6.48 16.18 -18.76 -0.30 -6.78 16 6 C 0.13 1.18 3.88 -27.88 -0.11 1.07 16 7 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 8 F -0.18 -1.96 15.47 2.25 0.03 -1.93 16 9 C -0.16 -1.81 3.66 -90.24 -0.33 -2.14 16 10 C 0.12 1.59 8.13 -8.50 -0.07 1.53 16 11 N -0.65 -12.22 3.68 -186.64 -0.69 -12.91 16 12 C 0.61 14.68 7.39 -12.52 -0.09 14.58 16 13 O -0.53 -14.61 15.54 5.26 0.08 -14.53 16 14 C -0.25 -6.48 5.83 -104.37 -0.61 -7.09 16 15 C -0.06 -1.28 8.69 -39.22 -0.34 -1.62 16 16 C -0.25 -5.51 10.03 -39.37 -0.39 -5.90 16 17 C -0.09 -2.16 10.01 -39.60 -0.40 -2.56 16 18 C -0.15 -4.00 8.64 -38.88 -0.34 -4.33 16 19 C 0.15 4.02 5.55 -106.54 -0.59 3.43 16 20 C -0.42 -11.68 7.67 -37.81 -0.29 -11.97 16 21 H 0.09 2.45 6.63 -52.48 -0.35 2.10 16 22 C 0.07 1.89 5.26 -17.30 -0.09 1.80 16 23 N -0.79 -20.72 10.91 55.56 0.61 -20.11 16 24 Si 0.92 19.72 29.57 -169.99 -5.03 14.69 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 27 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 28 C 0.12 1.78 5.48 -8.63 -0.05 1.73 16 29 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 34 H 0.13 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.01 7.91 -51.93 -0.41 0.59 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.84 6.24 -52.49 -0.33 1.51 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.12 3.23 6.32 -52.49 -0.33 2.89 16 41 H 0.28 6.71 8.29 -40.82 -0.34 6.37 16 42 H 0.09 1.43 7.61 -51.93 -0.40 1.03 16 43 H 0.09 1.25 7.07 -51.93 -0.37 0.88 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -33.14 368.22 -8.51 -41.65 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.54 Total: 4.17 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.82 Total: -6.15 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: -0.08 Total: -33.02 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.62 Total: -24.96 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.03 Total: -1.93 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.14 -8.51 -41.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868559958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.113 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds