Wall clock time and date at job start Tue Mar 31 2020 18:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45195 * 109.46805 * 2 1 4 4 C 1.34226 * 117.00245 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99758 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00714 * 180.02562 * 4 3 2 7 7 H 1.09004 * 109.47037 * 344.99908 * 6 4 3 8 8 F 1.39904 * 109.47164 * 104.99315 * 6 4 3 9 9 C 1.52998 * 109.47330 * 225.00131 * 6 4 3 10 10 C 1.53501 * 114.20675 * 179.97438 * 9 6 4 11 11 N 1.47065 * 87.98598 * 139.65127 * 10 9 6 12 12 C 1.34772 * 136.05891 * 152.84153 * 11 10 9 13 13 O 1.21615 * 119.99901 * 4.91842 * 12 11 10 14 14 C 1.47431 * 120.00419 * 184.64076 * 12 11 10 15 15 C 1.39228 * 120.28043 * 326.64241 * 14 12 11 16 16 C 1.38217 * 120.09012 * 179.74680 * 15 14 12 17 17 C 1.38830 * 120.67747 * 0.54689 * 16 15 14 18 18 C 1.37600 * 120.56846 * 359.70382 * 17 16 15 19 19 C 1.40702 * 119.88054 * 0.02562 * 18 17 16 20 20 C 1.40892 * 120.32630 * 179.97438 * 19 18 17 21 21 H 1.08005 * 120.00204 * 149.58008 * 20 19 18 22 22 C 1.40272 * 120.00142 * 329.57745 * 20 19 18 23 23 N 1.30635 * 120.00142 * 349.97735 * 22 20 19 24 24 Si 1.86793 * 120.00323 * 169.97379 * 22 20 19 25 25 H 1.48500 * 109.47448 * 89.99921 * 24 22 20 26 26 H 1.48504 * 109.47600 * 210.00202 * 24 22 20 27 27 H 1.48502 * 109.47223 * 330.00472 * 24 22 20 28 28 C 1.47073 * 87.88468 * 333.09928 * 11 10 9 29 29 H 1.09008 * 109.46936 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47215 * 299.99773 * 1 2 3 31 31 H 1.08993 * 109.47388 * 60.00228 * 1 2 3 32 32 H 1.09004 * 109.46967 * 240.00285 * 2 1 3 33 33 H 1.09000 * 109.47195 * 120.00091 * 2 1 3 34 34 H 1.08993 * 113.28419 * 46.92440 * 9 6 4 35 35 H 1.08997 * 113.46516 * 24.86820 * 10 9 6 36 36 H 1.08997 * 113.51643 * 254.44483 * 10 9 6 37 37 H 1.07999 * 119.95554 * 0.02562 * 15 14 12 38 38 H 1.08000 * 119.66287 * 180.25737 * 16 15 14 39 39 H 1.07996 * 119.71985 * 179.72453 * 17 16 15 40 40 H 1.08000 * 120.05747 * 180.02562 * 18 17 16 41 41 H 0.96993 * 120.00316 * 179.97438 * 23 22 20 42 42 H 1.09002 * 113.46340 * 141.67585 * 28 11 10 43 43 H 1.08997 * 113.46989 * 272.11535 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.1421 3.6528 -0.2652 8 9 4.4149 3.2372 1.2741 9 6 5.0576 3.0195 -1.0205 10 6 5.7247 4.3991 -1.1100 11 7 7.0182 3.7088 -1.2243 12 6 8.2178 3.9803 -1.7753 13 8 8.4251 5.0699 -2.2742 14 6 9.2807 2.9587 -1.7679 15 6 9.3883 2.0652 -0.7056 16 6 10.3831 1.1056 -0.7052 17 6 11.2912 1.0264 -1.7523 18 6 11.2135 1.8988 -2.8135 19 6 10.2067 2.8813 -2.8410 20 6 10.1188 3.7798 -3.9227 21 1 9.1585 4.1751 -4.2197 22 6 11.2783 4.1610 -4.6139 23 7 12.4543 3.8443 -4.1413 24 14 11.1410 5.1215 -6.2101 25 1 11.1387 6.5766 -5.9137 26 1 12.2964 4.7962 -7.0846 27 1 9.8786 4.7553 -6.9011 28 6 6.4247 2.5888 -0.4783 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 4.8022 2.5834 -1.9861 35 1 5.6263 4.9887 -0.1986 36 1 5.4502 4.9577 -2.0048 37 1 8.6907 2.1190 0.1171 38 1 10.4576 0.4133 0.1204 39 1 12.0651 0.2734 -1.7340 40 1 11.9240 1.8295 -3.6240 41 1 13.2561 4.1076 -4.6194 42 1 6.7438 1.6105 -0.8375 43 1 6.5148 2.6913 0.6031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868559958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:13 Heat of formation + Delta-G solvation = -126.069355 kcal Electronic energy + Delta-G solvation = -28571.190090 eV Core-core repulsion = 24303.516522 eV Total energy + Delta-G solvation = -4267.673568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.18358 -41.68638 -41.21777 -39.49164 -38.19337 -37.77122 -35.64156 -33.12787 -32.45932 -31.80814 -31.26025 -28.71015 -27.26895 -27.02762 -24.74730 -23.74870 -22.87099 -22.49231 -21.44460 -20.16920 -19.34863 -19.18745 -18.25762 -18.15047 -17.80965 -17.42075 -17.25327 -16.83753 -16.56163 -16.03393 -15.70638 -15.24042 -15.08501 -14.89615 -14.68038 -14.57545 -14.45334 -13.92683 -13.81517 -13.68761 -13.54662 -13.44322 -13.22404 -12.96496 -12.93258 -12.85906 -12.65845 -12.52435 -12.35770 -12.20777 -12.00565 -11.84957 -11.56161 -11.50242 -11.30592 -11.16463 -10.50502 -9.72933 -9.41898 -9.31213 -8.69937 -6.41341 0.53512 0.82848 0.98235 1.28599 1.31631 1.44871 1.48572 1.94560 2.15282 2.18138 2.71020 2.95391 3.18171 3.47357 3.54377 3.66839 3.75390 4.01580 4.02077 4.06748 4.06889 4.33048 4.35499 4.38551 4.45334 4.53086 4.55543 4.65322 4.75215 4.80569 4.94892 5.02324 5.06495 5.10597 5.14518 5.21005 5.32095 5.36977 5.57284 5.81496 6.00900 6.06787 6.27099 6.46747 6.56600 6.75615 6.85357 6.91633 7.46625 8.26212 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.002793 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.958280 B =10021.539236 C =10594.089736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.349 6.349 4 C 0.445 3.555 5 O -0.510 6.510 6 C 0.133 3.867 7 H 0.170 0.830 8 F -0.184 7.184 9 C -0.132 4.132 10 C 0.114 3.886 11 N -0.659 5.659 12 C 0.598 3.402 13 O -0.580 6.580 14 C -0.275 4.275 15 C -0.056 4.056 16 C -0.240 4.240 17 C -0.090 4.090 18 C -0.180 4.180 19 C 0.114 3.886 20 C -0.456 4.456 21 H 0.064 0.936 22 C 0.032 3.968 23 N -0.819 5.819 24 Si 0.982 3.018 25 H -0.270 1.270 26 H -0.253 1.253 27 H -0.261 1.261 28 C 0.109 3.891 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.291 0.709 42 H 0.074 0.926 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.186 -5.604 7.241 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.265 6.265 4 C 0.286 3.714 5 O -0.397 6.397 6 C 0.096 3.904 7 H 0.187 0.813 8 F -0.165 7.165 9 C -0.151 4.151 10 C -0.008 4.008 11 N -0.395 5.395 12 C 0.393 3.607 13 O -0.461 6.461 14 C -0.279 4.279 15 C -0.075 4.075 16 C -0.259 4.259 17 C -0.109 4.109 18 C -0.199 4.199 19 C 0.111 3.889 20 C -0.485 4.485 21 H 0.082 0.918 22 C -0.183 4.183 23 N -0.445 5.445 24 Si 0.803 3.197 25 H -0.195 1.195 26 H -0.177 1.177 27 H -0.184 1.184 28 C -0.013 4.013 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.151 0.849 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.394 -5.265 6.869 23.078 hybrid contribution 0.614 0.238 -0.458 0.802 sum -20.780 -5.027 6.411 22.320 Atomic orbital electron populations 1.21837 0.90191 1.04431 1.03946 1.23390 0.97231 0.78740 1.02886 1.86509 1.22885 1.34237 1.82918 1.24236 0.81546 0.92850 0.72786 1.90741 1.61115 1.43802 1.44014 1.21038 0.97090 0.92389 0.79904 0.81278 1.92909 1.89254 1.93436 1.40872 1.23417 0.92519 0.98795 1.00353 1.23051 0.79316 0.94577 1.03815 1.49518 1.10817 1.22891 1.56317 1.17993 0.80276 0.86477 0.75904 1.90668 1.80688 1.26065 1.48675 1.19718 1.04228 1.03946 1.00038 1.21018 0.97353 0.93213 0.95902 1.20755 0.99970 1.03684 1.01515 1.21173 0.97950 0.97809 0.93945 1.21346 1.01683 0.96664 1.00241 1.17810 0.89845 0.90650 0.90636 1.19726 0.94659 1.22200 1.11947 0.91778 1.26796 0.93961 0.96057 1.01511 1.69731 0.99365 1.37489 1.37869 0.85214 0.79504 0.78326 0.76688 1.19549 1.17701 1.18447 1.23005 0.89058 0.91661 0.97605 0.88336 0.91064 0.90996 0.90996 0.91153 0.84887 0.87766 0.89468 0.86306 0.85338 0.86035 0.87319 0.89779 0.90736 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.29 71.98 0.74 -0.31 16 2 C 0.05 0.65 6.19 71.98 0.45 1.10 16 3 O -0.35 -5.53 10.22 -51.38 -0.53 -6.05 16 4 C 0.45 8.48 7.30 71.24 0.52 9.00 16 5 O -0.51 -13.19 16.18 21.95 0.35 -12.83 16 6 C 0.13 2.05 3.88 29.85 0.12 2.16 16 7 H 0.17 1.16 8.14 -2.38 -0.02 1.14 16 8 F -0.18 -3.49 15.47 44.97 0.70 -2.80 16 9 C -0.13 -2.73 3.66 -10.55 -0.04 -2.77 16 10 C 0.11 2.91 8.13 83.18 0.68 3.58 16 11 N -0.66 -24.48 3.68 -862.67 -3.17 -27.66 16 12 C 0.60 29.89 7.39 86.67 0.64 30.53 16 13 O -0.58 -33.41 15.54 -4.08 -0.06 -33.48 16 14 C -0.27 -14.35 5.83 -19.70 -0.11 -14.46 16 15 C -0.06 -2.51 8.69 22.50 0.20 -2.32 16 16 C -0.24 -10.22 10.03 22.41 0.22 -10.00 16 17 C -0.09 -4.13 10.01 22.26 0.22 -3.91 16 18 C -0.18 -9.63 8.64 22.72 0.20 -9.43 16 19 C 0.11 6.55 5.55 -21.11 -0.12 6.43 16 20 C -0.46 -26.89 7.67 23.41 0.18 -26.71 16 21 H 0.06 3.92 6.63 -2.91 -0.02 3.90 16 22 C 0.03 1.73 5.26 85.37 0.45 2.18 16 23 N -0.82 -44.56 10.91 21.88 0.24 -44.32 16 24 Si 0.98 41.83 29.57 68.60 2.03 43.86 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 27 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 28 C 0.11 3.16 5.48 83.09 0.46 3.61 16 29 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.96 8.13 -2.38 -0.02 0.94 16 33 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 34 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.10 2.25 7.91 -2.39 -0.02 2.23 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.12 4.56 6.24 -2.91 -0.02 4.54 16 38 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 40 H 0.11 6.00 6.32 -2.91 -0.02 5.98 16 41 H 0.29 14.21 8.29 -92.71 -0.77 13.44 16 42 H 0.07 2.37 7.61 -2.39 -0.02 2.35 16 43 H 0.10 2.64 7.07 -2.39 -0.02 2.62 16 Total: -1.00 -76.80 368.22 5.39 -71.41 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 1.04 Total: 23.18 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.79 Total: -11.32 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -2.93 Total: -71.98 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.23 Total: -52.37 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.70 Total: -2.80 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -76.80 5.39 -71.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868559958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.661 kcal (2) G-P(sol) polarization free energy of solvation -76.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds