Wall clock time and date at job start Tue Mar 31 2020 19:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99640 * 2 1 4 4 O 1.20821 * 120.00349 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00011 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47224 * 180.02562 * 5 3 2 7 7 N 1.46508 * 109.47017 * 180.02562 * 6 5 3 8 8 C 1.37097 * 119.99907 * 89.99941 * 7 6 5 9 9 H 1.08004 * 119.99878 * 46.42391 * 8 7 6 10 10 C 1.38956 * 119.99917 * 226.42673 * 8 7 6 11 11 N 1.31407 * 119.99841 * 205.07417 * 10 8 7 12 12 Si 1.86795 * 119.99817 * 25.07528 * 10 8 7 13 13 H 1.48499 * 109.47108 * 87.10377 * 12 10 8 14 14 H 1.48505 * 109.46757 * 207.10324 * 12 10 8 15 15 H 1.48502 * 109.47445 * 327.09986 * 12 10 8 16 16 C 1.34773 * 120.00005 * 269.99602 * 7 6 5 17 17 O 1.21292 * 119.99841 * 4.56607 * 16 7 6 18 18 C 1.50700 * 120.00101 * 184.55772 * 16 7 6 19 19 H 1.08998 * 115.54911 * 294.17750 * 18 16 7 20 20 C 1.53003 * 117.49433 * 79.87984 * 18 16 7 21 21 C 1.52996 * 117.49653 * 148.50178 * 18 16 7 22 22 H 1.09000 * 117.50020 * 145.00030 * 21 18 16 23 23 C 1.50702 * 117.50086 * 0.02562 * 21 18 16 24 24 C 1.38243 * 119.97160 * 299.72196 * 23 21 18 25 25 C 1.38197 * 120.02367 * 179.76910 * 24 23 21 26 26 C 1.38454 * 119.97481 * 0.50737 * 25 24 23 27 27 F 1.35101 * 120.02896 * 179.76958 * 26 25 24 28 28 C 1.38460 * 119.94961 * 359.74873 * 26 25 24 29 29 C 1.38199 * 119.97082 * 359.97438 * 28 26 25 30 30 H 1.09003 * 109.47261 * 299.99346 * 1 2 3 31 31 H 1.08995 * 109.47597 * 59.99843 * 1 2 3 32 32 H 1.09007 * 109.46883 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47321 * 300.00520 * 5 3 2 34 34 H 1.09001 * 109.46983 * 60.00127 * 5 3 2 35 35 H 1.08999 * 109.47358 * 299.99926 * 6 5 3 36 36 H 1.08993 * 109.47634 * 60.00514 * 6 5 3 37 37 H 0.97004 * 119.99969 * 179.97438 * 11 10 8 38 38 H 1.09000 * 117.49447 * 214.97802 * 20 18 16 39 39 H 1.08995 * 117.50269 * 0.02562 * 20 18 16 40 40 H 1.08003 * 119.98770 * 0.02562 * 24 23 21 41 41 H 1.08003 * 120.01276 * 180.25429 * 25 24 23 42 42 H 1.07997 * 120.01695 * 179.97438 * 28 26 25 43 43 H 1.08002 * 119.98343 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7421 0.0011 7 7 5.4631 2.8189 0.0011 8 6 6.1475 2.8552 -1.1863 9 1 5.8240 3.5171 -1.9760 10 6 7.2574 2.0404 -1.3736 11 7 8.1859 2.3834 -2.2379 12 14 7.4295 0.4576 -0.3967 13 1 6.7342 -0.6431 -1.1111 14 1 8.8684 0.1208 -0.2495 15 1 6.8231 0.6366 0.9469 16 6 6.1361 2.8538 1.1682 17 8 5.5377 2.7384 2.2169 18 6 7.6320 3.0361 1.1703 19 1 8.2057 2.2192 0.7325 20 6 8.1708 4.4563 0.9864 21 6 8.2515 3.7786 2.3559 22 1 9.2328 3.4503 2.6982 23 6 7.3191 4.2712 3.4325 24 6 6.3200 5.1745 3.1207 25 6 5.4614 5.6233 4.1062 26 6 5.6087 5.1760 5.4083 27 9 4.7729 5.6176 6.3735 28 6 6.6131 4.2755 5.7204 29 6 7.4669 3.8237 4.7320 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.9557 0.7810 0.8908 34 1 3.9564 0.7807 -0.8892 35 1 3.6106 3.2365 -0.8889 36 1 3.6100 3.2360 0.8910 37 1 8.9609 1.8148 -2.3684 38 1 9.0992 4.5738 0.4276 39 1 7.4433 5.2587 0.8644 40 1 6.2079 5.5263 2.1058 41 1 4.6784 6.3257 3.8617 42 1 6.7292 3.9262 6.7357 43 1 8.2501 3.1209 4.9752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871340135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:18 Heat of formation + Delta-G solvation = -93.882464 kcal Electronic energy + Delta-G solvation = -29577.792779 eV Core-core repulsion = 25311.514939 eV Total energy + Delta-G solvation = -4266.277839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.59029 -40.29854 -39.88129 -38.33723 -36.44404 -35.79450 -34.85738 -32.60132 -30.86883 -30.80284 -29.70582 -27.71413 -25.16385 -24.67425 -23.42584 -22.65445 -22.22640 -20.53934 -20.08236 -19.11458 -17.94889 -17.44727 -17.15478 -16.42649 -16.34296 -15.99031 -15.71154 -15.30141 -15.08744 -15.02257 -14.51494 -14.02562 -13.98019 -13.79900 -13.44170 -13.24754 -13.12433 -12.88518 -12.71350 -12.50640 -12.24309 -12.08934 -12.01233 -11.68695 -11.58953 -11.17497 -10.92201 -10.82558 -10.71350 -10.56416 -10.51706 -10.26712 -10.19019 -9.99667 -9.71736 -9.15764 -8.75325 -8.68968 -8.00546 -7.71639 -6.62384 -4.26832 1.51220 1.62612 2.45541 2.86754 2.97305 3.10293 3.20267 3.61705 3.80852 4.00176 4.24787 4.58028 4.61403 4.77084 4.95646 5.07141 5.09970 5.12220 5.16735 5.18747 5.38888 5.47052 5.49045 5.53024 5.57679 5.61470 5.64032 5.79158 6.01115 6.02301 6.17104 6.26220 6.32040 6.39104 6.42791 6.46060 6.50626 6.59484 6.63743 6.65123 6.94946 7.26204 7.51440 7.60187 7.96563 8.37032 8.85275 9.18484 9.60365 10.47356 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008565 B = 0.005301 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3268.475206 B = 5280.540127 C = 7673.275284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.469 3.531 4 O -0.511 6.511 5 C -0.130 4.130 6 C 0.129 3.871 7 N -0.467 5.467 8 C -0.349 4.349 9 H 0.101 0.899 10 C 0.083 3.917 11 N -0.845 5.845 12 Si 0.839 3.161 13 H -0.275 1.275 14 H -0.278 1.278 15 H -0.253 1.253 16 C 0.517 3.483 17 O -0.572 6.572 18 C -0.131 4.131 19 H 0.110 0.890 20 C -0.126 4.126 21 C -0.119 4.119 22 H 0.114 0.886 23 C -0.023 4.023 24 C -0.067 4.067 25 C -0.146 4.146 26 C 0.079 3.921 27 F -0.150 7.150 28 C -0.154 4.154 29 C -0.088 4.088 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.276 0.724 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 -0.061 6.768 7.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.313 3.687 4 O -0.398 6.398 5 C -0.169 4.169 6 C 0.006 3.994 7 N -0.188 5.188 8 C -0.475 4.475 9 H 0.118 0.882 10 C -0.125 4.125 11 N -0.478 5.478 12 Si 0.664 3.336 13 H -0.201 1.201 14 H -0.203 1.203 15 H -0.177 1.177 16 C 0.307 3.693 17 O -0.455 6.455 18 C -0.152 4.152 19 H 0.128 0.872 20 C -0.163 4.163 21 C -0.138 4.138 22 H 0.132 0.868 23 C -0.023 4.023 24 C -0.085 4.085 25 C -0.165 4.165 26 C 0.060 3.940 27 F -0.129 7.129 28 C -0.172 4.172 29 C -0.106 4.106 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.299 0.183 7.197 7.920 hybrid contribution -0.148 -1.243 0.216 1.270 sum -3.447 -1.060 7.413 8.244 Atomic orbital electron populations 1.23203 0.77056 1.03254 1.02385 1.86549 1.22980 1.34163 1.84382 1.24003 0.92240 0.80982 0.71506 1.90631 1.67354 1.36255 1.45603 1.21930 0.86169 1.02806 1.06023 1.21199 0.83233 0.92076 1.02937 1.43681 1.03624 1.65835 1.05675 1.18917 1.10659 1.24360 0.93607 0.88187 1.25476 0.95046 0.96841 0.95185 1.69782 1.07603 1.36291 1.34159 0.87512 0.78460 0.85381 0.82295 1.20133 1.20323 1.17678 1.19488 0.87744 0.78594 0.83474 1.90611 1.69673 1.53549 1.31621 1.22101 0.94592 0.97898 1.00604 0.87221 1.22884 1.02999 0.94742 0.95693 1.21240 0.98765 1.05195 0.88571 0.86822 1.18972 0.95184 0.95011 0.93127 1.20783 0.93324 0.95684 0.98729 1.20954 1.01275 1.02748 0.91514 1.17615 0.91653 0.98881 0.85803 1.91441 1.70350 1.88407 1.62690 1.20914 0.96486 0.99432 1.00413 1.20641 0.99060 0.98983 0.91890 0.92082 0.92037 0.88480 0.87884 0.87250 0.90300 0.90612 0.91364 0.87814 0.88284 0.85541 0.85466 0.85528 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.58 10.57 -39.25 -0.41 -5.99 16 3 C 0.47 8.15 7.96 36.01 0.29 8.43 16 4 O -0.51 -9.74 15.73 -18.75 -0.29 -10.03 16 5 C -0.13 -2.38 6.13 -27.89 -0.17 -2.55 16 6 C 0.13 2.59 4.63 -4.04 -0.02 2.57 16 7 N -0.47 -10.29 2.05 -114.81 -0.24 -10.52 16 8 C -0.35 -8.26 9.35 -14.93 -0.14 -8.40 16 9 H 0.10 2.54 8.06 -52.48 -0.42 2.11 16 10 C 0.08 2.00 4.12 -17.47 -0.07 1.93 16 11 N -0.84 -21.08 13.96 55.50 0.77 -20.31 16 12 Si 0.84 18.70 24.58 -169.99 -4.18 14.52 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.25 -5.80 5.50 56.52 0.31 -5.49 16 16 C 0.52 11.46 4.13 -10.99 -0.05 11.42 16 17 O -0.57 -13.44 13.62 5.55 0.08 -13.36 16 18 C -0.13 -2.67 3.64 -91.77 -0.33 -3.00 16 19 H 0.11 2.34 3.73 -51.93 -0.19 2.15 16 20 C -0.13 -2.20 9.58 -26.73 -0.26 -2.46 16 21 C -0.12 -2.01 6.04 -91.77 -0.55 -2.57 16 22 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 23 C -0.02 -0.39 4.08 -104.62 -0.43 -0.81 16 24 C -0.07 -1.15 7.26 -39.59 -0.29 -1.44 16 25 C -0.15 -2.39 10.03 -39.52 -0.40 -2.79 16 26 C 0.08 1.29 7.30 -39.42 -0.29 1.00 16 27 F -0.15 -2.41 17.27 2.25 0.04 -2.37 16 28 C -0.15 -2.32 10.03 -39.51 -0.40 -2.72 16 29 C -0.09 -1.36 9.73 -39.60 -0.39 -1.74 16 30 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 34 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 35 H 0.08 1.53 8.00 -51.93 -0.42 1.11 16 36 H 0.08 1.57 7.45 -51.93 -0.39 1.18 16 37 H 0.28 6.50 8.31 -40.82 -0.34 6.17 16 38 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.10 1.71 6.17 -51.93 -0.32 1.39 16 40 H 0.13 2.16 5.94 -52.48 -0.31 1.85 16 41 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -28.34 360.86 -6.72 -35.06 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.50 Total: 9.24 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.42 Total: -1.68 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.54 Total: -30.83 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.63 Total: -29.39 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.18 Total: 14.52 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.34 -6.72 -35.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871340135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.824 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds