Wall clock time and date at job start Tue Mar 31 2020 19:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00073 * 2 1 4 4 O 1.20831 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00394 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47206 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.46650 * 179.97438 * 6 5 3 8 8 C 1.37086 * 120.00413 * 269.08652 * 7 6 5 9 9 H 1.08003 * 120.00304 * 140.00103 * 8 7 6 10 10 C 1.38954 * 120.00312 * 320.00774 * 8 7 6 11 11 N 1.31410 * 119.99658 * 339.80068 * 10 8 7 12 12 Si 1.86791 * 120.00252 * 159.80171 * 10 8 7 13 13 H 1.48501 * 109.47237 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47170 * 119.99690 * 12 10 8 15 15 H 1.48495 * 109.47403 * 240.00057 * 12 10 8 16 16 C 1.34777 * 119.99350 * 89.09174 * 7 6 5 17 17 O 1.21289 * 120.00516 * 359.97438 * 16 7 6 18 18 C 1.50704 * 120.00020 * 179.97438 * 16 7 6 19 19 C 1.50699 * 109.47595 * 179.97438 * 18 16 7 20 20 C 1.32574 * 119.99695 * 128.23721 * 19 18 16 21 21 C 1.47795 * 120.00372 * 10.10614 * 20 19 18 22 22 C 1.39546 * 120.11482 * 214.41572 * 21 20 19 23 23 C 1.37931 * 119.88490 * 179.73906 * 22 21 20 24 24 C 1.38583 * 120.10927 * 0.53412 * 23 22 21 25 25 F 1.35101 * 119.87807 * 179.74205 * 24 23 22 26 26 C 1.38572 * 120.23472 * 359.71835 * 24 23 22 27 27 C 1.37921 * 120.11826 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.46969 * 300.00214 * 1 2 3 29 29 H 1.08994 * 109.46943 * 60.00205 * 1 2 3 30 30 H 1.09001 * 109.46891 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46847 * 59.99491 * 5 3 2 32 32 H 1.09003 * 109.46702 * 300.00212 * 5 3 2 33 33 H 1.09002 * 109.47059 * 60.00089 * 6 5 3 34 34 H 1.08998 * 109.46921 * 299.99972 * 6 5 3 35 35 H 0.96995 * 120.00352 * 179.97438 * 11 10 8 36 36 H 1.09002 * 109.46577 * 59.99667 * 18 16 7 37 37 H 1.09004 * 109.46708 * 300.00248 * 18 16 7 38 38 H 1.07995 * 119.99907 * 308.51862 * 19 18 16 39 39 H 1.08008 * 119.99598 * 190.10059 * 20 19 18 40 40 H 1.08006 * 120.06308 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.94341 * 180.25209 * 23 22 21 42 42 H 1.08003 * 119.93769 * 180.02562 * 26 24 23 43 43 H 1.08001 * 120.06196 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4632 2.8188 -0.0011 8 6 6.1467 2.8739 1.1860 9 1 7.0674 2.3220 1.3052 10 6 5.6550 3.6399 2.2359 11 7 4.7921 4.6023 1.9992 12 14 6.2206 3.3015 3.9837 13 1 7.1878 2.1747 3.9816 14 1 6.8759 4.5145 4.5355 15 1 5.0484 2.9468 4.8234 16 6 6.1370 2.8351 -1.1682 17 8 5.5323 2.7859 -2.2184 18 6 7.6420 2.9145 -1.1683 19 6 8.1449 2.9170 -2.5889 20 6 8.9874 3.8578 -2.9921 21 6 9.6072 4.7670 -2.0055 22 6 9.8697 6.0948 -2.3452 23 6 10.4434 6.9407 -1.4190 24 6 10.7689 6.4710 -0.1565 25 9 11.3354 7.3022 0.7454 26 6 10.5151 5.1520 0.1843 27 6 9.9370 4.2993 -0.7327 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7806 0.8892 33 1 3.6107 3.2364 0.8889 34 1 3.6101 3.2360 -0.8911 35 1 4.4486 5.1368 2.7321 36 1 8.0512 2.0534 -0.6398 37 1 7.9575 3.8307 -0.6691 38 1 7.8154 2.1550 -3.2797 39 1 9.2209 3.9597 -4.0417 40 1 9.6208 6.4605 -3.3305 41 1 10.6432 7.9695 -1.6796 42 1 10.7704 4.7912 1.1697 43 1 9.7399 3.2714 -0.4663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:52 Heat of formation + Delta-G solvation = -119.964500 kcal Electronic energy + Delta-G solvation = -28419.067697 eV Core-core repulsion = 24151.658856 eV Total energy + Delta-G solvation = -4267.408841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.72619 -40.07911 -39.30750 -38.44281 -36.22861 -35.18246 -34.37295 -32.04214 -31.18606 -30.82996 -29.56533 -27.75036 -26.93612 -25.08652 -23.53217 -22.74090 -22.21925 -20.34791 -19.36143 -18.86613 -17.63037 -17.29550 -16.78737 -16.27936 -16.20708 -16.04432 -15.82205 -15.43393 -15.29563 -14.84315 -14.49851 -14.32240 -13.73421 -13.66150 -13.46886 -13.38646 -13.06148 -12.96738 -12.54439 -12.46195 -12.23277 -12.04407 -11.80918 -11.68114 -11.38309 -11.24432 -10.99977 -10.85602 -10.83348 -10.58300 -10.56229 -10.42996 -10.09805 -10.01957 -9.44266 -9.21146 -8.92242 -8.54887 -7.82444 -7.60909 -6.45004 -4.20654 1.06910 1.40260 2.59171 2.64278 3.02621 3.06336 3.17625 3.19783 3.79343 3.88511 4.05472 4.42124 4.70916 4.86823 4.91287 4.98512 5.01386 5.21920 5.27355 5.28780 5.36838 5.41224 5.54365 5.61530 5.75535 5.80939 5.90294 6.00109 6.09886 6.16565 6.25161 6.25829 6.29353 6.30983 6.44353 6.61072 6.70339 6.80062 6.92405 7.02242 7.13731 7.25666 7.39160 7.84260 8.15377 8.25683 8.99094 9.39291 9.83786 10.57050 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012715 B = 0.003390 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.626680 B = 8257.810774 C = 9789.132157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.130 3.870 7 N -0.438 5.438 8 C -0.352 4.352 9 H 0.091 0.909 10 C 0.049 3.951 11 N -0.849 5.849 12 Si 0.908 3.092 13 H -0.265 1.265 14 H -0.280 1.280 15 H -0.279 1.279 16 C 0.478 3.522 17 O -0.603 6.603 18 C -0.112 4.112 19 C -0.085 4.085 20 C -0.155 4.155 21 C -0.052 4.052 22 C -0.087 4.087 23 C -0.155 4.155 24 C 0.088 3.912 25 F -0.145 7.145 26 C -0.148 4.148 27 C -0.081 4.081 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.271 0.729 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.700 -4.062 -3.421 7.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.308 3.692 4 O -0.392 6.392 5 C -0.163 4.163 6 C 0.005 3.995 7 N -0.156 5.156 8 C -0.479 4.479 9 H 0.109 0.891 10 C -0.159 4.159 11 N -0.483 5.483 12 Si 0.734 3.266 13 H -0.189 1.189 14 H -0.205 1.205 15 H -0.204 1.204 16 C 0.268 3.732 17 O -0.489 6.489 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.173 4.173 21 C -0.052 4.052 22 C -0.105 4.105 23 C -0.174 4.174 24 C 0.069 3.931 25 F -0.124 7.124 26 C -0.167 4.167 27 C -0.098 4.098 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.065 -3.583 -3.766 7.257 hybrid contribution -0.049 0.180 1.250 1.264 sum 5.016 -3.403 -2.516 6.563 Atomic orbital electron populations 1.23169 0.77365 1.03030 1.02344 1.86538 1.22752 1.34419 1.84661 1.24099 0.92426 0.80890 0.71736 1.90655 1.67281 1.36239 1.45042 1.21902 0.85787 1.03368 1.05194 1.21095 0.82541 0.90831 1.04987 1.43339 1.04238 1.63241 1.04779 1.19379 1.09708 1.29341 0.89509 0.89146 1.25426 0.96676 0.93346 1.00429 1.69950 1.29864 1.15637 1.32889 0.86182 0.78932 0.78774 0.82734 1.18950 1.20541 1.20447 1.20400 0.89185 0.79785 0.83873 1.90537 1.70529 1.55994 1.31817 1.20998 0.94777 1.04644 0.94702 1.23161 0.93437 0.96527 0.97247 1.21448 1.01572 0.96756 0.97554 1.19147 0.98308 0.93715 0.94061 1.21085 0.97519 0.92537 0.99368 1.21001 1.02782 1.00957 0.92676 1.17785 0.99210 0.88542 0.87592 1.91471 1.82643 1.71467 1.66816 1.21082 1.02124 0.92254 1.01264 1.21404 0.95800 1.00585 0.92056 0.92168 0.92174 0.88613 0.88451 0.87701 0.87276 0.91638 0.91840 0.89086 0.87427 0.86361 0.86170 0.85141 0.85114 0.84695 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.90 10.57 -39.24 -0.41 -6.32 16 3 C 0.47 8.85 7.96 36.01 0.29 9.14 16 4 O -0.51 -10.97 15.73 -18.75 -0.30 -11.26 16 5 C -0.12 -2.40 6.13 -27.88 -0.17 -2.57 16 6 C 0.13 3.05 4.27 -4.04 -0.02 3.03 16 7 N -0.44 -10.37 2.50 -114.81 -0.29 -10.66 16 8 C -0.35 -8.26 8.54 -14.94 -0.13 -8.38 16 9 H 0.09 1.97 7.17 -52.48 -0.38 1.60 16 10 C 0.05 1.19 4.95 -17.47 -0.09 1.10 16 11 N -0.85 -22.14 11.58 55.50 0.64 -21.49 16 12 Si 0.91 18.62 29.60 -169.99 -5.03 13.59 16 13 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 16 C 0.48 10.94 7.63 -10.98 -0.08 10.85 16 17 O -0.60 -15.12 15.61 5.55 0.09 -15.03 16 18 C -0.11 -2.05 3.09 -29.03 -0.09 -2.14 16 19 C -0.09 -1.37 8.69 -36.21 -0.31 -1.68 16 20 C -0.16 -2.21 9.80 -37.58 -0.37 -2.58 16 21 C -0.05 -0.76 5.21 -105.01 -0.55 -1.30 16 22 C -0.09 -1.16 9.78 -39.21 -0.38 -1.54 16 23 C -0.16 -2.07 10.01 -39.57 -0.40 -2.47 16 24 C 0.09 1.28 7.30 -39.33 -0.29 1.00 16 25 F -0.15 -2.18 17.26 2.25 0.04 -2.14 16 26 C -0.15 -2.12 10.01 -39.57 -0.40 -2.52 16 27 C -0.08 -1.16 7.33 -39.21 -0.29 -1.45 16 28 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 32 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 33 H 0.11 2.81 5.63 -51.93 -0.29 2.52 16 34 H 0.07 1.67 7.41 -51.93 -0.38 1.28 16 35 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.09 1.48 7.41 -51.93 -0.38 1.09 16 37 H 0.11 2.06 4.85 -51.93 -0.25 1.81 16 38 H 0.12 1.84 8.03 -52.49 -0.42 1.41 16 39 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 40 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 41 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 43 H 0.14 1.87 6.04 -52.49 -0.32 1.55 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -30.21 373.20 -7.21 -37.42 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.37 Total: 10.28 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.20 Total: -0.02 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.36 Total: -32.15 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.62 Total: -32.61 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.21 -7.21 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.549 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds