Wall clock time and date at job start Tue Mar 31 2020 19:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00073 * 2 1 4 4 O 1.20831 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00394 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47206 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.46650 * 179.97438 * 6 5 3 8 8 C 1.37086 * 120.00413 * 269.08652 * 7 6 5 9 9 H 1.08003 * 120.00304 * 140.00103 * 8 7 6 10 10 C 1.38954 * 120.00312 * 320.00774 * 8 7 6 11 11 N 1.31410 * 119.99658 * 339.80068 * 10 8 7 12 12 Si 1.86791 * 120.00252 * 159.80171 * 10 8 7 13 13 H 1.48501 * 109.47237 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47170 * 119.99690 * 12 10 8 15 15 H 1.48495 * 109.47403 * 240.00057 * 12 10 8 16 16 C 1.34777 * 119.99350 * 89.09174 * 7 6 5 17 17 O 1.21289 * 120.00516 * 359.97438 * 16 7 6 18 18 C 1.50704 * 120.00020 * 179.97438 * 16 7 6 19 19 C 1.50699 * 109.47595 * 179.97438 * 18 16 7 20 20 C 1.32574 * 119.99695 * 128.23721 * 19 18 16 21 21 C 1.47795 * 120.00372 * 10.10614 * 20 19 18 22 22 C 1.39546 * 120.11482 * 214.41572 * 21 20 19 23 23 C 1.37931 * 119.88490 * 179.73906 * 22 21 20 24 24 C 1.38583 * 120.10927 * 0.53412 * 23 22 21 25 25 F 1.35101 * 119.87807 * 179.74205 * 24 23 22 26 26 C 1.38572 * 120.23472 * 359.71835 * 24 23 22 27 27 C 1.37921 * 120.11826 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.46969 * 300.00214 * 1 2 3 29 29 H 1.08994 * 109.46943 * 60.00205 * 1 2 3 30 30 H 1.09001 * 109.46891 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46847 * 59.99491 * 5 3 2 32 32 H 1.09003 * 109.46702 * 300.00212 * 5 3 2 33 33 H 1.09002 * 109.47059 * 60.00089 * 6 5 3 34 34 H 1.08998 * 109.46921 * 299.99972 * 6 5 3 35 35 H 0.96995 * 120.00352 * 179.97438 * 11 10 8 36 36 H 1.09002 * 109.46577 * 59.99667 * 18 16 7 37 37 H 1.09004 * 109.46708 * 300.00248 * 18 16 7 38 38 H 1.07995 * 119.99907 * 308.51862 * 19 18 16 39 39 H 1.08008 * 119.99598 * 190.10059 * 20 19 18 40 40 H 1.08006 * 120.06308 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.94341 * 180.25209 * 23 22 21 42 42 H 1.08003 * 119.93769 * 180.02562 * 26 24 23 43 43 H 1.08001 * 120.06196 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4632 2.8188 -0.0011 8 6 6.1467 2.8739 1.1860 9 1 7.0674 2.3220 1.3052 10 6 5.6550 3.6399 2.2359 11 7 4.7921 4.6023 1.9992 12 14 6.2206 3.3015 3.9837 13 1 7.1878 2.1747 3.9816 14 1 6.8759 4.5145 4.5355 15 1 5.0484 2.9468 4.8234 16 6 6.1370 2.8351 -1.1682 17 8 5.5323 2.7859 -2.2184 18 6 7.6420 2.9145 -1.1683 19 6 8.1449 2.9170 -2.5889 20 6 8.9874 3.8578 -2.9921 21 6 9.6072 4.7670 -2.0055 22 6 9.8697 6.0948 -2.3452 23 6 10.4434 6.9407 -1.4190 24 6 10.7689 6.4710 -0.1565 25 9 11.3354 7.3022 0.7454 26 6 10.5151 5.1520 0.1843 27 6 9.9370 4.2993 -0.7327 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7806 0.8892 33 1 3.6107 3.2364 0.8889 34 1 3.6101 3.2360 -0.8911 35 1 4.4486 5.1368 2.7321 36 1 8.0512 2.0534 -0.6398 37 1 7.9575 3.8307 -0.6691 38 1 7.8154 2.1550 -3.2797 39 1 9.2209 3.9597 -4.0417 40 1 9.6208 6.4605 -3.3305 41 1 10.6432 7.9695 -1.6796 42 1 10.7704 4.7912 1.1697 43 1 9.7399 3.2714 -0.4663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:51 Heat of formation + Delta-G solvation = -134.579571 kcal Electronic energy + Delta-G solvation = -28419.701454 eV Core-core repulsion = 24151.658856 eV Total energy + Delta-G solvation = -4268.042598 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.86475 -41.57357 -40.69213 -39.90033 -37.68391 -36.88106 -35.73544 -33.83948 -32.64193 -32.13737 -30.80379 -28.97252 -28.20918 -26.89212 -25.06685 -23.85089 -23.43117 -21.83135 -21.08797 -20.13766 -19.11219 -18.62741 -18.20815 -17.82463 -17.64580 -17.47789 -17.22397 -16.60000 -16.58311 -16.29722 -16.03845 -15.90945 -15.17315 -14.94675 -14.83462 -14.57220 -14.33817 -14.14796 -14.13441 -13.81326 -13.64436 -13.50045 -13.15920 -12.96597 -12.94414 -12.81764 -12.62075 -12.53313 -12.05800 -11.96799 -11.90393 -11.82508 -11.74799 -11.61596 -11.05557 -10.63448 -10.34061 -9.95988 -9.48575 -8.98711 -8.28773 -6.09213 -0.05810 0.34408 1.12222 1.40782 1.43430 1.50654 1.61712 1.66894 2.06727 2.35044 2.75106 3.03786 3.14082 3.33915 3.82576 3.83787 3.86495 3.99041 4.10154 4.17511 4.21690 4.30058 4.30943 4.33647 4.42187 4.52360 4.59907 4.68660 4.72346 4.74699 4.96465 4.98972 5.06492 5.13423 5.20135 5.25614 5.26519 5.38979 5.46647 5.52697 5.70088 5.89050 6.01305 6.03358 6.40362 6.69107 7.14601 7.58231 8.02546 8.74466 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012715 B = 0.003390 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.626680 B = 8257.810774 C = 9789.132157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.472 3.528 4 O -0.539 6.539 5 C -0.113 4.113 6 C 0.135 3.865 7 N -0.449 5.449 8 C -0.352 4.352 9 H 0.110 0.890 10 C 0.005 3.995 11 N -0.893 5.893 12 Si 0.972 3.028 13 H -0.243 1.243 14 H -0.286 1.286 15 H -0.284 1.284 16 C 0.465 3.535 17 O -0.631 6.631 18 C -0.099 4.099 19 C -0.111 4.111 20 C -0.132 4.132 21 C -0.072 4.072 22 C -0.087 4.087 23 C -0.157 4.157 24 C 0.071 3.929 25 F -0.151 7.151 26 C -0.159 4.159 27 C -0.088 4.088 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.139 0.861 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.032 0.968 35 H 0.269 0.731 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 -5.354 -3.400 9.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.429 6.429 5 C -0.151 4.151 6 C 0.010 3.990 7 N -0.167 5.167 8 C -0.479 4.479 9 H 0.128 0.872 10 C -0.198 4.198 11 N -0.529 5.529 12 Si 0.796 3.204 13 H -0.166 1.166 14 H -0.212 1.212 15 H -0.210 1.210 16 C 0.256 3.744 17 O -0.519 6.519 18 C -0.138 4.138 19 C -0.129 4.129 20 C -0.149 4.149 21 C -0.072 4.072 22 C -0.105 4.105 23 C -0.176 4.176 24 C 0.052 3.948 25 F -0.129 7.129 26 C -0.178 4.178 27 C -0.106 4.106 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.139 0.861 39 H 0.165 0.835 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.164 0.836 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.266 -4.916 -3.746 8.802 hybrid contribution -0.453 0.615 1.173 1.400 sum 5.813 -4.301 -2.573 7.675 Atomic orbital electron populations 1.23582 0.74817 1.05892 1.02396 1.86506 1.25116 1.32315 1.83839 1.23904 0.92227 0.81261 0.70986 1.90646 1.67913 1.37569 1.46807 1.21665 0.86613 1.00564 1.06281 1.20829 0.82992 0.93081 1.02055 1.43585 1.04225 1.63476 1.05449 1.19802 1.10059 1.28845 0.89229 0.87210 1.26250 0.96683 0.92899 1.04018 1.70085 1.31854 1.17170 1.33791 0.85189 0.78519 0.78850 0.77841 1.16630 1.21213 1.21015 1.21259 0.91239 0.78773 0.83115 1.90504 1.71662 1.57064 1.32672 1.20916 0.91151 1.05014 0.96717 1.23037 0.95482 0.98252 0.96160 1.21712 0.99598 0.94881 0.98751 1.19379 0.98969 0.94539 0.94328 1.21396 0.96632 0.92035 1.00439 1.21294 1.02048 1.02127 0.92093 1.18065 0.99756 0.88802 0.88187 1.91455 1.82802 1.71593 1.67085 1.21283 1.02227 0.92348 1.01928 1.21558 0.95838 1.01053 0.92156 0.92184 0.92187 0.84318 0.87637 0.86113 0.89719 0.94909 0.92185 0.87153 0.88202 0.86105 0.83497 0.82710 0.82920 0.83616 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.15 10.57 -51.36 -0.54 -11.70 16 3 C 0.47 18.00 7.96 71.24 0.57 18.57 16 4 O -0.54 -24.03 15.73 21.95 0.35 -23.69 16 5 C -0.11 -4.39 6.13 29.85 0.18 -4.21 16 6 C 0.13 6.57 4.27 86.38 0.37 6.94 16 7 N -0.45 -21.53 2.50 -635.53 -1.59 -23.12 16 8 C -0.35 -16.36 8.54 84.04 0.72 -15.64 16 9 H 0.11 4.59 7.17 -2.91 -0.02 4.56 16 10 C 0.01 0.25 4.95 84.93 0.42 0.67 16 11 N -0.89 -47.81 11.58 21.66 0.25 -47.56 16 12 Si 0.97 37.77 29.60 68.60 2.03 39.80 16 13 H -0.24 -8.52 7.11 99.48 0.71 -7.82 16 14 H -0.29 -11.34 7.11 99.48 0.71 -10.63 16 15 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 16 C 0.47 21.42 7.63 87.66 0.67 22.09 16 17 O -0.63 -32.21 15.61 -3.06 -0.05 -32.25 16 18 C -0.10 -3.55 3.09 29.10 0.09 -3.46 16 19 C -0.11 -3.41 8.69 24.53 0.21 -3.20 16 20 C -0.13 -3.47 9.80 23.65 0.23 -3.24 16 21 C -0.07 -1.96 5.21 -20.12 -0.10 -2.06 16 22 C -0.09 -2.13 9.78 22.51 0.22 -1.91 16 23 C -0.16 -3.89 10.01 22.28 0.22 -3.67 16 24 C 0.07 1.99 7.30 22.43 0.16 2.16 16 25 F -0.15 -4.38 17.26 44.97 0.78 -3.60 16 26 C -0.16 -4.38 10.01 22.27 0.22 -4.16 16 27 C -0.09 -2.42 7.33 22.51 0.17 -2.26 16 28 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 29 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 30 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 32 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 33 H 0.08 4.56 5.63 -2.39 -0.01 4.54 16 34 H 0.03 1.76 7.41 -2.39 -0.02 1.74 16 35 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 36 H 0.11 3.41 7.41 -2.39 -0.02 3.39 16 37 H 0.10 3.75 4.85 -2.38 -0.01 3.74 16 38 H 0.12 3.63 8.03 -2.91 -0.02 3.61 16 39 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 42 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 43 H 0.15 3.72 6.04 -2.91 -0.02 3.70 16 Total: -1.00 -66.86 373.20 7.81 -59.05 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: 1.04 Total: 34.65 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 5.55 Total: 8.41 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -1.34 Total: -70.68 kcal Atomic # 8 Polarization: -67.39 SS G_CDS: -0.25 Total: -67.64 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.78 Total: -3.60 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -66.86 7.81 -59.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.527 kcal (2) G-P(sol) polarization free energy of solvation -66.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds