Wall clock time and date at job start Tue Mar 31 2020 19:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99590 * 2 1 4 4 O 1.20828 * 120.00622 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99995 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47344 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47430 * 174.61270 * 6 5 3 8 8 C 1.37098 * 119.99824 * 54.83592 * 7 6 5 9 9 H 1.08005 * 120.00278 * 222.98802 * 8 7 6 10 10 C 1.38955 * 119.99953 * 42.99441 * 8 7 6 11 11 N 1.31406 * 119.99973 * 171.80124 * 10 8 7 12 12 Si 1.86798 * 119.99626 * 351.80484 * 10 8 7 13 13 H 1.48499 * 109.47459 * 65.44657 * 12 10 8 14 14 H 1.48503 * 109.47232 * 185.44732 * 12 10 8 15 15 H 1.48495 * 109.47288 * 305.44664 * 12 10 8 16 16 C 1.34779 * 120.00387 * 234.84780 * 7 6 5 17 17 O 1.21294 * 119.99834 * 354.69900 * 16 7 6 18 18 C 1.50698 * 120.00071 * 174.70953 * 16 7 6 19 19 H 1.09001 * 115.55162 * 330.70191 * 18 16 7 20 20 C 1.53004 * 117.49641 * 185.03275 * 18 16 7 21 21 C 1.53002 * 117.50056 * 116.37559 * 18 16 7 22 22 F 1.39898 * 117.49808 * 214.97900 * 21 18 16 23 23 C 1.50701 * 117.49796 * 359.97438 * 21 18 16 24 24 C 1.38240 * 120.00095 * 286.50600 * 23 21 18 25 25 C 1.38234 * 120.00233 * 179.81263 * 24 23 21 26 26 C 1.38238 * 119.99696 * 0.41060 * 25 24 23 27 27 C 1.38234 * 120.00086 * 359.81807 * 26 25 24 28 28 C 1.38236 * 120.00057 * 106.77409 * 23 21 18 29 29 H 1.09005 * 109.47172 * 299.99968 * 1 2 3 30 30 H 1.08995 * 109.47148 * 60.00334 * 1 2 3 31 31 H 1.08998 * 109.46666 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47406 * 300.00058 * 5 3 2 33 33 H 1.09009 * 109.47040 * 59.99777 * 5 3 2 34 34 H 1.08999 * 109.47912 * 294.61344 * 6 5 3 35 35 H 1.09001 * 109.46998 * 54.61458 * 6 5 3 36 36 H 0.97008 * 119.99675 * 179.97438 * 11 10 8 37 37 H 1.09003 * 117.50194 * 359.97438 * 20 18 16 38 38 H 1.08996 * 117.49650 * 144.99626 * 20 18 16 39 39 H 1.08006 * 119.99708 * 359.97438 * 24 23 21 40 40 H 1.08001 * 120.00059 * 180.20753 * 25 24 23 41 41 H 1.08001 * 120.00018 * 179.79165 * 26 25 24 42 42 H 1.08000 * 119.99738 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.00031 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4572 2.8207 0.1280 8 6 6.2609 2.1488 -0.7564 9 1 7.1254 1.6095 -0.3983 10 6 5.9633 2.1618 -2.1137 11 7 6.8152 1.6576 -2.9779 12 14 4.3524 2.8960 -2.7096 13 1 4.3398 4.3544 -2.4304 14 1 4.2162 2.6705 -4.1710 15 1 3.2204 2.2467 -2.0010 16 6 6.0077 3.5533 1.1163 17 8 5.3017 4.2241 1.8394 18 6 7.5004 3.5391 1.3230 19 1 8.0068 2.6193 1.0304 20 6 8.0534 4.2962 2.5321 21 6 8.2541 4.8553 1.1213 22 9 9.5406 4.7860 0.5760 23 6 7.4470 6.0665 0.7308 24 6 6.9445 6.1780 -0.5523 25 6 6.2009 7.2872 -0.9094 26 6 5.9669 8.2889 0.0140 27 6 6.4733 8.1797 1.2956 28 6 7.2137 7.0687 1.6539 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.9564 0.7807 0.8891 33 1 3.9557 0.7810 -0.8909 34 1 3.6923 3.2118 -0.9353 35 1 3.5326 3.2595 0.8368 36 1 6.6072 1.6664 -3.9254 37 1 7.3376 4.8048 3.1779 38 1 8.9236 3.8744 3.0350 39 1 7.1308 5.3971 -1.2748 40 1 5.8055 7.3726 -1.9108 41 1 5.3887 9.1571 -0.2660 42 1 6.2908 8.9626 2.0168 43 1 7.6095 6.9835 2.6550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871345348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:58 Heat of formation + Delta-G solvation = -81.668952 kcal Electronic energy + Delta-G solvation = -29900.508419 eV Core-core repulsion = 25634.760197 eV Total energy + Delta-G solvation = -4265.748222 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.25361 -40.31948 -39.56904 -38.50478 -36.56145 -35.85219 -34.82154 -32.30251 -31.13087 -30.59426 -30.37869 -27.75710 -25.16625 -25.03414 -23.46499 -22.71347 -21.82911 -20.47963 -20.25852 -18.98805 -17.61717 -17.52142 -16.92429 -16.58845 -16.34184 -16.10820 -15.77226 -15.21302 -15.12595 -14.83289 -14.30818 -13.97539 -13.86619 -13.72211 -13.58042 -13.18466 -13.08380 -12.81669 -12.55832 -12.44292 -12.40928 -12.28219 -12.05673 -11.74946 -11.49518 -11.15444 -11.07026 -10.84240 -10.73631 -10.63895 -10.42472 -10.22710 -10.02982 -9.73312 -9.56528 -9.11780 -8.79882 -8.57647 -8.51057 -7.88203 -6.53138 -4.28877 1.59212 1.74510 2.46542 2.84790 2.97583 3.15788 3.18850 3.24570 3.90666 4.01555 4.08867 4.15795 4.48536 4.80418 4.96116 5.03447 5.13371 5.16048 5.19408 5.24444 5.27476 5.39123 5.41825 5.45497 5.49802 5.62040 5.78113 5.82315 5.91437 5.95905 6.03916 6.14635 6.22599 6.32736 6.38590 6.41936 6.49967 6.61160 6.73049 6.82265 6.90082 7.28638 7.30394 7.91973 7.98875 8.09877 8.81094 9.17532 9.50149 10.55849 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.004413 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.228114 B = 6343.479720 C = 6625.732465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.117 4.117 6 C 0.100 3.900 7 N -0.463 5.463 8 C -0.349 4.349 9 H 0.109 0.891 10 C 0.071 3.929 11 N -0.863 5.863 12 Si 0.883 3.117 13 H -0.271 1.271 14 H -0.296 1.296 15 H -0.258 1.258 16 C 0.524 3.476 17 O -0.580 6.580 18 C -0.147 4.147 19 H 0.137 0.863 20 C -0.159 4.159 21 C 0.105 3.895 22 F -0.170 7.170 23 C -0.066 4.066 24 C -0.081 4.081 25 C -0.124 4.124 26 C -0.114 4.114 27 C -0.128 4.128 28 C -0.087 4.087 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.277 0.723 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.153 2.982 5.795 7.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.399 6.399 5 C -0.155 4.155 6 C -0.023 4.023 7 N -0.184 5.184 8 C -0.476 4.476 9 H 0.126 0.874 10 C -0.136 4.136 11 N -0.498 5.498 12 Si 0.714 3.286 13 H -0.198 1.198 14 H -0.224 1.224 15 H -0.184 1.184 16 C 0.312 3.688 17 O -0.463 6.463 18 C -0.168 4.168 19 H 0.155 0.845 20 C -0.197 4.197 21 C 0.085 3.915 22 F -0.150 7.150 23 C -0.066 4.066 24 C -0.099 4.099 25 C -0.142 4.142 26 C -0.132 4.132 27 C -0.146 4.146 28 C -0.105 4.105 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.148 0.852 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.653 3.536 5.905 7.792 hybrid contribution -0.878 0.027 -0.824 1.204 sum -4.531 3.563 5.081 7.684 Atomic orbital electron populations 1.23206 0.77082 1.03283 1.02362 1.86538 1.22925 1.33943 1.84437 1.23986 0.92382 0.81032 0.71534 1.90637 1.67394 1.36309 1.45542 1.21657 0.85823 1.01025 1.06968 1.21647 0.83979 0.93429 1.03222 1.43568 1.03305 1.43691 1.27858 1.19059 1.09894 1.31960 0.86661 0.87367 1.25291 0.97374 0.95211 0.95762 1.69649 1.34367 1.42862 1.02895 0.87326 0.83722 0.81062 0.76536 1.19751 1.22409 1.18400 1.19122 0.87694 0.79805 0.82138 1.90576 1.62853 1.43532 1.49339 1.22853 0.95057 0.97227 1.01689 0.84543 1.23755 1.03219 1.02108 0.90632 1.19240 0.80285 0.93641 0.98295 1.92859 1.38098 1.97045 1.87004 1.18921 0.99243 0.93760 0.94693 1.21140 0.95378 0.97563 0.95850 1.21095 0.99093 0.94250 0.99735 1.21118 0.99581 0.98730 0.93820 1.20990 0.99043 0.98114 0.96446 1.20865 0.97884 0.92946 0.98796 0.92077 0.92139 0.88358 0.87247 0.86270 0.92190 0.88870 0.91272 0.86322 0.87272 0.85241 0.86192 0.86369 0.86169 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.72 10.57 -39.25 -0.41 -6.13 16 3 C 0.47 8.62 7.25 36.01 0.26 8.88 16 4 O -0.51 -10.53 15.66 -18.75 -0.29 -10.82 16 5 C -0.12 -2.20 4.63 -27.88 -0.13 -2.33 16 6 C 0.10 2.17 4.11 -4.04 -0.02 2.15 16 7 N -0.46 -10.47 2.56 -114.81 -0.29 -10.76 16 8 C -0.35 -8.36 8.36 -14.93 -0.12 -8.49 16 9 H 0.11 2.71 6.84 -52.48 -0.36 2.35 16 10 C 0.07 1.78 5.23 -17.47 -0.09 1.68 16 11 N -0.86 -22.69 13.96 55.50 0.77 -21.91 16 12 Si 0.88 20.14 23.60 -169.99 -4.01 16.13 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.30 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.26 -5.57 3.95 56.52 0.22 -5.35 16 16 C 0.52 11.55 6.29 -10.99 -0.07 11.48 16 17 O -0.58 -13.67 15.24 5.55 0.08 -13.59 16 18 C -0.15 -2.85 5.33 -91.77 -0.49 -3.34 16 19 H 0.14 2.62 6.77 -51.93 -0.35 2.27 16 20 C -0.16 -2.54 9.23 -26.69 -0.25 -2.79 16 21 C 0.10 1.93 3.36 -91.73 -0.31 1.62 16 22 F -0.17 -3.26 17.53 2.25 0.04 -3.22 16 23 C -0.07 -1.22 4.24 -104.62 -0.44 -1.67 16 24 C -0.08 -1.58 9.38 -39.58 -0.37 -1.96 16 25 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 26 C -0.11 -1.72 10.05 -39.58 -0.40 -2.12 16 27 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 28 C -0.09 -1.41 9.22 -39.58 -0.37 -1.77 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.12 2.31 6.07 -51.92 -0.32 2.00 16 34 H 0.06 1.39 2.61 -51.93 -0.14 1.25 16 35 H 0.09 2.10 6.75 -51.93 -0.35 1.75 16 36 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.12 1.88 7.08 -51.93 -0.37 1.52 16 38 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.13 2.74 8.06 -52.48 -0.42 2.32 16 40 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 41 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.12 1.69 7.45 -52.49 -0.39 1.30 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -29.91 359.42 -6.61 -36.52 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -5.39 Total: 10.35 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.52 Total: -1.97 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.48 Total: -32.68 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.62 Total: -30.55 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.04 Total: -3.22 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.01 Total: 16.13 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.91 -6.61 -36.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871345348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.151 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds