Wall clock time and date at job start Tue Mar 31 2020 19:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99926 * 2 1 4 4 O 1.20829 * 119.99649 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00144 * 180.27813 * 3 2 1 6 6 C 1.53004 * 109.47268 * 179.72312 * 5 3 2 7 7 N 1.46498 * 109.46843 * 186.96378 * 6 5 3 8 8 C 1.37094 * 120.00467 * 329.79578 * 7 6 5 9 9 H 1.08002 * 119.99518 * 9.78743 * 8 7 6 10 10 C 1.38952 * 120.00592 * 189.77971 * 8 7 6 11 11 N 1.31413 * 119.99420 * 41.71876 * 10 8 7 12 12 Si 1.86792 * 120.00380 * 221.72368 * 10 8 7 13 13 H 1.48502 * 109.47320 * 89.99808 * 12 10 8 14 14 H 1.48502 * 109.47344 * 209.99897 * 12 10 8 15 15 H 1.48500 * 109.47161 * 329.99908 * 12 10 8 16 16 C 1.34782 * 119.99716 * 149.80419 * 7 6 5 17 17 O 1.21293 * 119.99502 * 185.44569 * 16 7 6 18 18 C 1.50693 * 119.99725 * 5.44075 * 16 7 6 19 19 H 1.09000 * 110.27256 * 32.30821 * 18 16 7 20 20 C 1.54343 * 110.30089 * 154.37947 * 18 16 7 21 21 C 1.54346 * 102.39618 * 92.56856 * 20 18 16 22 22 C 1.51377 * 105.16709 * 26.35610 * 21 20 18 23 23 C 1.38456 * 130.36163 * 162.78344 * 22 21 20 24 24 C 1.38329 * 120.19193 * 180.02562 * 23 22 21 25 25 F 1.35106 * 120.05867 * 179.97438 * 24 23 22 26 26 C 1.38478 * 119.88095 * 0.02562 * 24 23 22 27 27 C 1.38057 * 119.90745 * 359.97438 * 26 24 23 28 28 C 1.38231 * 109.75744 * 342.80965 * 22 21 20 29 29 H 1.08999 * 109.47465 * 59.99907 * 1 2 3 30 30 H 1.09002 * 109.46899 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47160 * 299.99864 * 1 2 3 32 32 H 1.09005 * 109.47142 * 299.72573 * 5 3 2 33 33 H 1.08998 * 109.47101 * 59.72333 * 5 3 2 34 34 H 1.08994 * 109.47109 * 306.96639 * 6 5 3 35 35 H 1.09006 * 109.46581 * 66.96542 * 6 5 3 36 36 H 0.96995 * 119.99607 * 184.92467 * 11 10 8 37 37 H 1.08999 * 110.82500 * 210.79968 * 20 18 16 38 38 H 1.09011 * 110.82320 * 334.14762 * 20 18 16 39 39 H 1.09002 * 110.30171 * 145.28016 * 21 20 18 40 40 H 1.08996 * 110.30060 * 267.33061 * 21 20 18 41 41 H 1.08002 * 119.90906 * 0.04687 * 23 22 21 42 42 H 1.08001 * 120.04091 * 179.97438 * 26 24 23 43 43 H 1.07996 * 119.87329 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0063 6 6 4.0000 2.7422 -0.0119 7 7 5.4525 2.8213 -0.1855 8 6 6.2552 1.8153 0.2869 9 1 5.8151 0.8956 0.6431 10 6 7.6349 1.9788 0.3073 11 7 8.1551 3.1254 0.6836 12 14 8.7502 0.5689 -0.2003 13 1 9.0120 0.6457 -1.6600 14 1 10.0349 0.6633 0.5386 15 1 8.0904 -0.7231 0.1170 16 6 5.9998 3.8832 -0.8096 17 8 7.1902 3.9032 -1.0413 18 6 5.1326 5.0455 -1.2194 19 1 4.3131 5.1732 -0.5121 20 6 5.9732 6.3372 -1.3039 21 6 6.3963 6.3607 -2.7880 22 6 5.3198 5.5872 -3.5190 23 6 5.0013 5.5485 -4.8659 24 6 3.9588 4.7561 -5.3118 25 9 3.6500 4.7208 -6.6266 26 6 3.2317 3.9998 -4.4079 27 6 3.5496 4.0386 -3.0650 28 6 4.5936 4.8315 -2.6177 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9596 0.7831 0.8834 33 1 3.9523 0.7786 -0.8966 34 1 3.5071 3.2637 -0.8324 35 1 3.7212 3.2071 0.9338 36 1 9.1136 3.2639 0.6301 37 1 5.3679 7.2101 -1.0596 38 1 6.8437 6.2764 -0.6506 39 1 6.4386 7.3869 -3.1530 40 1 7.3641 5.8752 -2.9131 41 1 5.5685 6.1386 -5.5706 42 1 2.4170 3.3805 -4.7532 43 1 2.9819 3.4489 -2.3606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871348435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:10 Heat of formation + Delta-G solvation = -120.750504 kcal Electronic energy + Delta-G solvation = -29861.832296 eV Core-core repulsion = 25594.389371 eV Total energy + Delta-G solvation = -4267.442925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.90894 -41.73056 -41.34339 -39.59114 -37.65692 -36.72592 -35.75964 -34.07479 -32.53550 -31.88202 -29.73400 -28.90014 -28.57780 -26.86807 -24.80170 -23.89836 -22.96570 -22.15615 -21.60580 -20.65354 -18.80873 -18.54002 -18.01172 -17.70307 -17.61494 -17.43228 -17.00378 -16.67684 -16.61399 -16.36652 -15.92319 -15.74674 -15.28019 -15.02221 -14.59212 -14.56376 -14.31835 -13.89383 -13.84396 -13.77454 -13.55787 -13.20205 -13.10926 -12.90677 -12.77897 -12.71766 -12.55768 -12.37211 -12.15664 -12.00349 -11.93990 -11.83345 -11.75009 -11.64288 -11.50008 -11.06592 -10.11483 -9.91251 -9.44975 -8.69963 -8.10523 -5.63464 0.11854 0.23220 1.17182 1.45577 1.54718 1.56685 1.72915 2.41632 2.48690 2.61911 3.08157 3.17653 3.30543 3.49160 3.68550 3.78245 3.94104 4.00050 4.08676 4.09223 4.16131 4.24617 4.28869 4.36115 4.39231 4.50585 4.53979 4.65896 4.75738 4.79730 4.80966 4.86524 4.95126 5.01196 5.03822 5.09765 5.18946 5.25298 5.37777 5.41452 5.59390 5.61591 5.89752 6.09859 6.72647 7.01433 7.31511 7.77068 8.50372 8.86235 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007035 B = 0.006155 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3979.289768 B = 4547.707682 C = 7177.482897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.475 3.525 4 O -0.532 6.532 5 C -0.113 4.113 6 C 0.117 3.883 7 N -0.456 5.456 8 C -0.370 4.370 9 H 0.111 0.889 10 C 0.020 3.980 11 N -0.787 5.787 12 Si 0.934 3.066 13 H -0.304 1.304 14 H -0.296 1.296 15 H -0.251 1.251 16 C 0.417 3.583 17 O -0.551 6.551 18 C -0.059 4.059 19 H 0.090 0.910 20 C -0.095 4.095 21 C -0.070 4.070 22 C -0.068 4.068 23 C -0.146 4.146 24 C 0.086 3.914 25 F -0.142 7.142 26 C -0.151 4.151 27 C -0.085 4.085 28 C -0.097 4.097 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.254 0.746 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.151 0.849 42 H 0.158 0.842 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.748 0.214 -5.441 14.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.319 3.681 4 O -0.421 6.421 5 C -0.151 4.151 6 C -0.006 4.006 7 N -0.176 5.176 8 C -0.495 4.495 9 H 0.129 0.871 10 C -0.192 4.192 11 N -0.423 5.423 12 Si 0.761 3.239 13 H -0.232 1.232 14 H -0.222 1.222 15 H -0.175 1.175 16 C 0.206 3.794 17 O -0.430 6.430 18 C -0.081 4.081 19 H 0.108 0.892 20 C -0.133 4.133 21 C -0.107 4.107 22 C -0.068 4.068 23 C -0.164 4.164 24 C 0.067 3.933 25 F -0.121 7.121 26 C -0.169 4.169 27 C -0.103 4.103 28 C -0.098 4.098 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.168 0.832 42 H 0.176 0.824 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.274 0.582 -5.486 14.374 hybrid contribution 0.671 -0.526 -0.234 0.884 sum -12.603 0.056 -5.721 13.840 Atomic orbital electron populations 1.23570 0.74664 1.05674 1.02694 1.86519 1.25151 1.32635 1.83694 1.23723 0.91866 0.81324 0.71187 1.90642 1.67742 1.36979 1.46781 1.21497 0.86653 0.99334 1.07585 1.21367 0.82097 0.95279 1.01885 1.43690 1.04358 1.20215 1.49296 1.19550 0.88580 0.95856 1.45544 0.87128 1.25199 0.98380 0.97481 0.98098 1.70406 1.12079 1.27268 1.32561 0.85840 0.78666 0.81923 0.77458 1.23167 1.22246 1.17503 1.19749 0.88032 0.85087 0.86560 1.90554 1.16830 1.80821 1.54819 1.20688 0.97871 0.95557 0.93978 0.89230 1.22097 0.99301 0.95472 0.96438 1.20975 0.95888 1.00154 0.93637 1.20605 0.96320 0.97275 0.92586 1.20671 0.98458 1.01789 0.95506 1.17556 0.97672 1.00266 0.77850 1.91474 1.92516 1.95500 1.32570 1.21169 1.02060 1.01404 0.92284 1.20735 0.96389 0.97714 0.95450 1.20527 0.96133 0.97798 0.95306 0.91697 0.85158 0.91851 0.86225 0.86526 0.89591 0.92928 0.93613 0.88435 0.92062 0.87894 0.91613 0.83154 0.82395 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.70 10.57 -51.45 -0.54 -9.24 16 3 C 0.47 13.23 7.96 71.23 0.57 13.79 16 4 O -0.53 -16.66 15.63 21.95 0.34 -16.32 16 5 C -0.11 -3.42 4.81 29.85 0.14 -3.27 16 6 C 0.12 4.24 4.60 86.38 0.40 4.64 16 7 N -0.46 -21.17 2.99 -635.54 -1.90 -23.07 16 8 C -0.37 -18.69 8.98 84.04 0.76 -17.93 16 9 H 0.11 5.05 6.13 -2.91 -0.02 5.03 16 10 C 0.02 1.08 3.96 84.93 0.34 1.41 16 11 N -0.79 -46.11 10.63 21.66 0.23 -45.88 16 12 Si 0.93 44.03 29.69 68.60 2.04 46.06 16 13 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 14 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 15 H -0.25 -10.72 7.11 99.48 0.71 -10.02 16 16 C 0.42 20.29 6.38 87.65 0.56 20.85 16 17 O -0.55 -31.47 11.65 -3.07 -0.04 -31.50 16 18 C -0.06 -2.26 2.33 -11.62 -0.03 -2.29 16 19 H 0.09 3.18 7.07 -2.39 -0.02 3.16 16 20 C -0.10 -3.29 6.28 31.51 0.20 -3.10 16 21 C -0.07 -2.23 6.56 30.52 0.20 -2.03 16 22 C -0.07 -2.20 6.14 -19.60 -0.12 -2.32 16 23 C -0.15 -4.20 10.02 22.34 0.22 -3.97 16 24 C 0.09 2.44 7.30 22.35 0.16 2.60 16 25 F -0.14 -3.89 17.27 44.97 0.78 -3.11 16 26 C -0.15 -4.12 10.03 22.28 0.22 -3.90 16 27 C -0.09 -2.62 9.45 22.29 0.21 -2.41 16 28 C -0.10 -3.36 5.35 -19.58 -0.10 -3.46 16 29 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 30 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 32 H 0.12 3.55 6.92 -2.38 -0.02 3.54 16 33 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.09 2.90 3.29 -2.39 -0.01 2.90 16 35 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.06 2.49 7.50 -2.38 -0.02 2.48 16 39 H 0.10 2.52 8.14 -2.39 -0.02 2.51 16 40 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.14 3.99 5.76 -2.91 -0.02 3.97 16 Total: -1.00 -69.30 356.63 6.88 -62.42 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 1.05 Total: 20.40 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 4.92 Total: 0.25 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -1.67 Total: -68.95 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -0.24 Total: -57.06 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.04 Total: 46.06 kcal Total: -69.30 6.88 -62.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871348435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.333 kcal (2) G-P(sol) polarization free energy of solvation -69.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds