Wall clock time and date at job start Tue Mar 31 2020 19:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99998 * 2 1 4 4 O 1.20822 * 120.00001 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00313 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47583 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.47580 * 179.97438 * 6 5 3 8 8 C 1.37092 * 120.00311 * 264.14976 * 7 6 5 9 9 H 1.08007 * 119.99872 * 135.38406 * 8 7 6 10 10 C 1.38951 * 120.00422 * 315.39416 * 8 7 6 11 11 N 1.31415 * 119.99609 * 2.10316 * 10 8 7 12 12 Si 1.86799 * 120.00417 * 182.11062 * 10 8 7 13 13 H 1.48496 * 109.46995 * 59.99709 * 12 10 8 14 14 H 1.48498 * 109.46896 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46797 * 299.99374 * 12 10 8 16 16 C 1.34777 * 119.99746 * 84.14667 * 7 6 5 17 17 O 1.21288 * 119.99903 * 4.25739 * 16 7 6 18 18 C 1.50696 * 119.99982 * 184.25018 * 16 7 6 19 19 H 1.09005 * 110.26896 * 23.99906 * 18 16 7 20 20 C 1.54341 * 110.30855 * 261.82306 * 18 16 7 21 21 C 1.54347 * 102.39127 * 267.43556 * 20 18 16 22 22 C 1.51379 * 105.17043 * 333.63843 * 21 20 18 23 23 C 1.38459 * 130.36492 * 197.19485 * 22 21 20 24 24 C 1.38325 * 120.19325 * 180.02562 * 23 22 21 25 25 F 1.35101 * 120.06282 * 179.97438 * 24 23 22 26 26 C 1.38484 * 119.88164 * 359.97438 * 24 23 22 27 27 C 1.38058 * 119.90384 * 0.02562 * 26 24 23 28 28 C 1.38237 * 109.75561 * 17.19466 * 22 21 20 29 29 H 1.08996 * 109.46893 * 299.99669 * 1 2 3 30 30 H 1.09004 * 109.46440 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46788 * 60.00050 * 1 2 3 32 32 H 1.09003 * 109.47387 * 300.00619 * 5 3 2 33 33 H 1.09000 * 109.47154 * 60.00116 * 5 3 2 34 34 H 1.08995 * 109.47434 * 300.00450 * 6 5 3 35 35 H 1.09000 * 109.46790 * 59.99881 * 6 5 3 36 36 H 0.96993 * 119.99900 * 180.02562 * 11 10 8 37 37 H 1.09004 * 110.82237 * 25.65338 * 20 18 16 38 38 H 1.08999 * 110.82902 * 149.21154 * 20 18 16 39 39 H 1.09001 * 110.30499 * 214.71993 * 21 20 18 40 40 H 1.08999 * 110.38935 * 92.60765 * 21 20 18 41 41 H 1.08001 * 119.90788 * 359.97438 * 23 22 21 42 42 H 1.08002 * 120.04684 * 180.02562 * 26 24 23 43 43 H 1.08007 * 119.87207 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4631 2.8188 0.0023 8 6 6.1404 2.9755 1.1839 9 1 7.0192 2.3809 1.3855 10 6 5.6962 3.8990 2.1223 11 7 4.6034 4.5927 1.8951 12 14 6.6523 4.1546 3.7065 13 1 8.0309 4.6038 3.3856 14 1 5.9754 5.1866 4.5322 15 1 6.7110 2.8768 4.4608 16 6 6.1432 2.7354 -1.1583 17 8 5.5424 2.6745 -2.2102 18 6 7.6500 2.7179 -1.1491 19 1 8.0176 2.3591 -0.1877 20 6 8.2039 4.1280 -1.4440 21 6 8.3911 4.0967 -2.9757 22 6 8.5979 2.6370 -3.3198 23 6 9.1174 2.0496 -4.4608 24 6 9.2110 0.6726 -4.5534 25 9 9.7178 0.1021 -5.6683 26 6 8.7841 -0.1202 -3.5013 27 6 8.2661 0.4660 -2.3638 28 6 8.1721 1.8447 -2.2701 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 3.9558 0.7809 0.8908 33 1 3.9564 0.7807 -0.8891 34 1 3.6107 3.2365 -0.8888 35 1 3.6100 3.2359 0.8911 36 1 4.2935 5.2376 2.5499 37 1 7.4841 4.8948 -1.1573 38 1 9.1580 4.2828 -0.9402 39 1 9.2662 4.6802 -3.2619 40 1 7.5015 4.4806 -3.4750 41 1 9.4499 2.6681 -5.2814 42 1 8.8562 -1.1956 -3.5706 43 1 7.9337 -0.1528 -1.5433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871348436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:14 Heat of formation + Delta-G solvation = -139.062072 kcal Electronic energy + Delta-G solvation = -29142.468054 eV Core-core repulsion = 24874.231080 eV Total energy + Delta-G solvation = -4268.236974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.72397 -40.25020 -39.96831 -38.17409 -36.17428 -35.19626 -34.62307 -32.00756 -31.40300 -30.59299 -28.49797 -27.77169 -27.02340 -25.09959 -23.56418 -22.71051 -21.20472 -20.84137 -20.04841 -19.15041 -17.48115 -17.06654 -16.61959 -16.46242 -16.20340 -16.09915 -15.88378 -15.41718 -15.19570 -14.64034 -14.40568 -14.13266 -13.77338 -13.60826 -13.51851 -13.34904 -12.87455 -12.64913 -12.51986 -12.22411 -12.10373 -11.90987 -11.73072 -11.57050 -11.29943 -11.14937 -11.06500 -10.95670 -10.76012 -10.56215 -10.52926 -10.46617 -10.40389 -10.04963 -9.99296 -9.14259 -8.73676 -8.66879 -8.05709 -7.57587 -6.37401 -4.29773 1.39617 1.46153 2.69188 3.06121 3.07750 3.15315 3.16256 3.73734 3.78888 4.04668 4.32009 4.64315 4.76750 4.85492 4.95363 5.08274 5.24585 5.31493 5.31654 5.40456 5.43343 5.49642 5.56344 5.65150 5.82912 5.85477 5.92427 6.07072 6.08467 6.16957 6.23638 6.29977 6.31826 6.34181 6.42730 6.52925 6.65751 6.75308 6.87734 6.94290 7.12662 7.26344 7.55616 7.89661 8.20579 8.28246 8.97784 9.37621 9.80516 10.58956 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009040 B = 0.004293 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.633982 B = 6520.030307 C = 8731.610334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.368 6.368 3 C 0.466 3.534 4 O -0.504 6.504 5 C -0.125 4.125 6 C 0.121 3.879 7 N -0.440 5.440 8 C -0.345 4.345 9 H 0.089 0.911 10 C 0.048 3.952 11 N -0.864 5.864 12 Si 0.918 3.082 13 H -0.270 1.270 14 H -0.283 1.283 15 H -0.273 1.273 16 C 0.491 3.509 17 O -0.590 6.590 18 C -0.059 4.059 19 H 0.105 0.895 20 C -0.096 4.096 21 C -0.081 4.081 22 C -0.053 4.053 23 C -0.147 4.147 24 C 0.088 3.912 25 F -0.146 7.146 26 C -0.157 4.157 27 C -0.074 4.074 28 C -0.070 4.070 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.133 0.867 36 H 0.273 0.727 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.241 -6.118 -3.420 8.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.309 3.691 4 O -0.390 6.390 5 C -0.164 4.164 6 C -0.003 4.003 7 N -0.158 5.158 8 C -0.473 4.473 9 H 0.107 0.893 10 C -0.158 4.158 11 N -0.500 5.500 12 Si 0.744 3.256 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.198 1.198 16 C 0.279 3.721 17 O -0.474 6.474 18 C -0.080 4.080 19 H 0.123 0.877 20 C -0.134 4.134 21 C -0.117 4.117 22 C -0.053 4.053 23 C -0.165 4.165 24 C 0.069 3.931 25 F -0.125 7.125 26 C -0.176 4.176 27 C -0.093 4.093 28 C -0.071 4.071 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.150 0.850 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.575 -5.692 -3.854 7.748 hybrid contribution 0.182 -0.080 0.672 0.700 sum 3.756 -5.772 -3.183 7.586 Atomic orbital electron populations 1.23161 0.77430 1.02979 1.02324 1.86540 1.22713 1.34530 1.84718 1.24077 0.92401 0.80857 0.71761 1.90650 1.67240 1.36199 1.44935 1.21937 0.85865 1.03780 1.04787 1.21462 0.82251 0.90452 1.06139 1.43350 1.04395 1.63024 1.05040 1.19350 1.12195 1.21005 0.94740 0.89302 1.25538 0.95976 0.94480 0.99807 1.69627 1.20769 1.23464 1.36134 0.86146 0.79834 0.78410 0.81213 1.19523 1.20821 1.19779 1.20203 0.88272 0.79684 0.83972 1.90562 1.70393 1.55058 1.31432 1.20622 0.94612 0.94983 0.97761 0.87687 1.22092 1.01302 0.95992 0.94045 1.21116 1.02126 0.91421 0.97082 1.20417 0.95468 0.96846 0.92616 1.20431 1.04286 0.92695 0.99123 1.17436 1.00569 0.91258 0.83867 1.91457 1.85191 1.85226 1.50630 1.20896 1.03217 1.00004 0.93475 1.20457 0.97759 0.93705 0.97331 1.20435 0.97193 0.93141 0.96327 0.92154 0.88671 0.92218 0.87988 0.88844 0.92242 0.84985 0.91635 0.89616 0.90589 0.90858 0.89467 0.85375 0.85017 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.06 10.57 -39.25 -0.41 -6.48 16 3 C 0.47 9.02 7.96 36.00 0.29 9.31 16 4 O -0.50 -11.05 15.73 -18.75 -0.29 -11.35 16 5 C -0.12 -2.46 6.09 -27.89 -0.17 -2.63 16 6 C 0.12 2.83 4.18 -4.04 -0.02 2.81 16 7 N -0.44 -10.21 2.54 -114.82 -0.29 -10.50 16 8 C -0.35 -7.89 8.49 -14.94 -0.13 -8.02 16 9 H 0.09 1.89 6.51 -52.48 -0.34 1.55 16 10 C 0.05 1.13 5.35 -17.47 -0.09 1.03 16 11 N -0.86 -21.77 10.80 55.50 0.60 -21.17 16 12 Si 0.92 18.14 29.55 -169.99 -5.02 13.12 16 13 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 14 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 15 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 16 C 0.49 10.97 6.51 -10.99 -0.07 10.90 16 17 O -0.59 -14.72 16.13 5.55 0.09 -14.63 16 18 C -0.06 -1.08 2.72 -91.89 -0.25 -1.33 16 19 H 0.11 1.86 6.22 -51.93 -0.32 1.54 16 20 C -0.10 -1.58 6.59 -25.32 -0.17 -1.75 16 21 C -0.08 -1.22 6.76 -26.84 -0.18 -1.40 16 22 C -0.05 -0.86 6.14 -104.21 -0.64 -1.50 16 23 C -0.15 -2.18 10.02 -39.47 -0.40 -2.58 16 24 C 0.09 1.31 7.30 -39.46 -0.29 1.02 16 25 F -0.15 -2.13 17.27 2.25 0.04 -2.09 16 26 C -0.16 -2.24 10.03 -39.56 -0.40 -2.64 16 27 C -0.07 -1.15 10.04 -39.55 -0.40 -1.55 16 28 C -0.07 -1.21 4.98 -104.19 -0.52 -1.73 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 33 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.06 1.52 7.51 -51.93 -0.39 1.13 16 35 H 0.13 3.39 5.22 -51.93 -0.27 3.12 16 36 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 37 H 0.09 1.55 7.89 -51.93 -0.41 1.14 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -29.05 368.56 -7.62 -36.67 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.52 Total: 9.40 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.36 Total: 1.46 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.31 Total: -31.67 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.62 Total: -32.45 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.02 Total: 13.12 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.05 -7.62 -36.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871348436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.388 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds