Wall clock time and date at job start Tue Mar 31 2020 19:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99998 * 2 1 4 4 O 1.20822 * 120.00001 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00313 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47583 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.47580 * 179.97438 * 6 5 3 8 8 C 1.37092 * 120.00311 * 264.14976 * 7 6 5 9 9 H 1.08007 * 119.99872 * 135.38406 * 8 7 6 10 10 C 1.38951 * 120.00422 * 315.39416 * 8 7 6 11 11 N 1.31415 * 119.99609 * 2.10316 * 10 8 7 12 12 Si 1.86799 * 120.00417 * 182.11062 * 10 8 7 13 13 H 1.48496 * 109.46995 * 59.99709 * 12 10 8 14 14 H 1.48498 * 109.46896 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46797 * 299.99374 * 12 10 8 16 16 C 1.34777 * 119.99746 * 84.14667 * 7 6 5 17 17 O 1.21288 * 119.99903 * 4.25739 * 16 7 6 18 18 C 1.50696 * 119.99982 * 184.25018 * 16 7 6 19 19 H 1.09005 * 110.26896 * 23.99906 * 18 16 7 20 20 C 1.54341 * 110.30855 * 261.82306 * 18 16 7 21 21 C 1.54347 * 102.39127 * 267.43556 * 20 18 16 22 22 C 1.51379 * 105.17043 * 333.63843 * 21 20 18 23 23 C 1.38459 * 130.36492 * 197.19485 * 22 21 20 24 24 C 1.38325 * 120.19325 * 180.02562 * 23 22 21 25 25 F 1.35101 * 120.06282 * 179.97438 * 24 23 22 26 26 C 1.38484 * 119.88164 * 359.97438 * 24 23 22 27 27 C 1.38058 * 119.90384 * 0.02562 * 26 24 23 28 28 C 1.38237 * 109.75561 * 17.19466 * 22 21 20 29 29 H 1.08996 * 109.46893 * 299.99669 * 1 2 3 30 30 H 1.09004 * 109.46440 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46788 * 60.00050 * 1 2 3 32 32 H 1.09003 * 109.47387 * 300.00619 * 5 3 2 33 33 H 1.09000 * 109.47154 * 60.00116 * 5 3 2 34 34 H 1.08995 * 109.47434 * 300.00450 * 6 5 3 35 35 H 1.09000 * 109.46790 * 59.99881 * 6 5 3 36 36 H 0.96993 * 119.99900 * 180.02562 * 11 10 8 37 37 H 1.09004 * 110.82237 * 25.65338 * 20 18 16 38 38 H 1.08999 * 110.82902 * 149.21154 * 20 18 16 39 39 H 1.09001 * 110.30499 * 214.71993 * 21 20 18 40 40 H 1.08999 * 110.38935 * 92.60765 * 21 20 18 41 41 H 1.08001 * 119.90788 * 359.97438 * 23 22 21 42 42 H 1.08002 * 120.04684 * 180.02562 * 26 24 23 43 43 H 1.08007 * 119.87207 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4631 2.8188 0.0023 8 6 6.1404 2.9755 1.1839 9 1 7.0192 2.3809 1.3855 10 6 5.6962 3.8990 2.1223 11 7 4.6034 4.5927 1.8951 12 14 6.6523 4.1546 3.7065 13 1 8.0309 4.6038 3.3856 14 1 5.9754 5.1866 4.5322 15 1 6.7110 2.8768 4.4608 16 6 6.1432 2.7354 -1.1583 17 8 5.5424 2.6745 -2.2102 18 6 7.6500 2.7179 -1.1491 19 1 8.0176 2.3591 -0.1877 20 6 8.2039 4.1280 -1.4440 21 6 8.3911 4.0967 -2.9757 22 6 8.5979 2.6370 -3.3198 23 6 9.1174 2.0496 -4.4608 24 6 9.2110 0.6726 -4.5534 25 9 9.7178 0.1021 -5.6683 26 6 8.7841 -0.1202 -3.5013 27 6 8.2661 0.4660 -2.3638 28 6 8.1721 1.8447 -2.2701 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 3.9558 0.7809 0.8908 33 1 3.9564 0.7807 -0.8891 34 1 3.6107 3.2365 -0.8888 35 1 3.6100 3.2359 0.8911 36 1 4.2935 5.2376 2.5499 37 1 7.4841 4.8948 -1.1573 38 1 9.1580 4.2828 -0.9402 39 1 9.2662 4.6802 -3.2619 40 1 7.5015 4.4806 -3.4750 41 1 9.4499 2.6681 -5.2814 42 1 8.8562 -1.1956 -3.5706 43 1 7.9337 -0.1528 -1.5433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871348436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:14 Heat of formation + Delta-G solvation = -152.808011 kcal Electronic energy + Delta-G solvation = -29143.064123 eV Core-core repulsion = 24874.231080 eV Total energy + Delta-G solvation = -4268.833043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.86759 -41.70527 -41.41357 -39.75122 -37.65595 -36.82767 -36.08591 -33.78719 -32.81026 -32.11116 -29.70784 -29.04374 -28.30156 -26.87555 -25.16603 -23.90892 -22.62902 -22.03605 -21.58493 -20.88002 -19.04717 -18.51393 -18.00009 -17.88740 -17.61819 -17.55475 -17.33430 -16.64401 -16.57052 -16.20322 -15.83348 -15.63357 -15.25211 -15.00662 -14.93325 -14.52492 -14.27611 -14.15286 -13.81921 -13.77814 -13.64169 -13.20965 -13.06516 -12.89257 -12.84111 -12.72096 -12.61252 -12.43301 -12.15948 -12.01398 -11.94386 -11.84104 -11.78611 -11.69037 -11.59614 -10.92288 -10.40158 -9.85297 -9.49440 -9.28651 -8.16915 -6.14832 0.18646 0.30658 1.13073 1.52141 1.53448 1.62371 1.66531 2.05161 2.36848 2.57274 3.08199 3.10077 3.16661 3.52648 3.65029 3.85398 4.01190 4.10271 4.15430 4.19749 4.25887 4.29852 4.30829 4.34273 4.34928 4.56183 4.60648 4.68696 4.69599 4.85688 4.86782 4.96452 5.01105 5.09711 5.14174 5.17860 5.27964 5.28563 5.38853 5.43812 5.66735 5.67553 5.96741 6.10218 6.45196 6.70147 7.16832 7.59335 8.02193 8.80127 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009040 B = 0.004293 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.633982 B = 6520.030307 C = 8731.610334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.472 3.528 4 O -0.537 6.537 5 C -0.114 4.114 6 C 0.126 3.874 7 N -0.450 5.450 8 C -0.348 4.348 9 H 0.108 0.892 10 C 0.004 3.996 11 N -0.903 5.903 12 Si 0.984 3.016 13 H -0.258 1.258 14 H -0.293 1.293 15 H -0.263 1.263 16 C 0.484 3.516 17 O -0.624 6.624 18 C -0.055 4.055 19 H 0.111 0.889 20 C -0.095 4.095 21 C -0.076 4.076 22 C -0.064 4.064 23 C -0.148 4.148 24 C 0.083 3.917 25 F -0.144 7.144 26 C -0.153 4.153 27 C -0.081 4.081 28 C -0.094 4.094 29 H 0.061 0.939 30 H 0.138 0.862 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.024 0.976 35 H 0.111 0.889 36 H 0.269 0.731 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.149 0.851 42 H 0.159 0.841 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.060 -7.839 -3.170 10.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.152 4.152 6 C 0.002 3.998 7 N -0.168 5.168 8 C -0.475 4.475 9 H 0.125 0.875 10 C -0.198 4.198 11 N -0.540 5.540 12 Si 0.807 3.193 13 H -0.182 1.182 14 H -0.219 1.219 15 H -0.187 1.187 16 C 0.274 3.726 17 O -0.510 6.510 18 C -0.075 4.075 19 H 0.128 0.872 20 C -0.133 4.133 21 C -0.113 4.113 22 C -0.064 4.064 23 C -0.167 4.167 24 C 0.064 3.936 25 F -0.122 7.122 26 C -0.171 4.171 27 C -0.099 4.099 28 C -0.094 4.094 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.042 0.958 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.167 0.833 42 H 0.176 0.824 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.408 -7.451 -3.606 9.888 hybrid contribution -0.471 0.384 0.514 0.796 sum 4.937 -7.066 -3.092 9.158 Atomic orbital electron populations 1.23579 0.74821 1.05864 1.02413 1.86507 1.25145 1.32437 1.83907 1.23874 0.92187 0.81249 0.71045 1.90640 1.67843 1.37493 1.46638 1.21695 0.86736 1.01229 1.05587 1.21171 0.82983 0.92448 1.03200 1.43572 1.04225 1.63225 1.05797 1.19759 1.12354 1.20980 0.94423 0.87462 1.26367 0.96488 0.94065 1.02895 1.69804 1.22577 1.24423 1.37239 0.85125 0.78713 0.78224 0.77216 1.18231 1.21892 1.18748 1.20912 0.90125 0.78505 0.83069 1.90527 1.71591 1.56441 1.32454 1.20583 0.91340 0.96739 0.98886 0.87151 1.22118 1.01768 0.93953 0.95450 1.21079 1.02709 0.91642 0.95846 1.20548 0.95881 0.97071 0.92920 1.20649 1.03685 0.93118 0.99234 1.17596 1.00452 0.91493 0.84093 1.91466 1.85119 1.85162 1.50501 1.21173 1.01953 1.01402 0.92595 1.20682 0.97706 0.93284 0.98265 1.20485 0.98554 0.94021 0.96360 0.92060 0.84359 0.92269 0.86446 0.88525 0.95788 0.87129 0.92071 0.92200 0.87650 0.87484 0.91445 0.83288 0.82355 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.62 10.57 -51.39 -0.54 -12.17 16 3 C 0.47 18.55 7.96 71.23 0.57 19.12 16 4 O -0.54 -24.38 15.73 21.97 0.35 -24.03 16 5 C -0.11 -4.59 6.09 29.85 0.18 -4.40 16 6 C 0.13 6.20 4.18 86.38 0.36 6.56 16 7 N -0.45 -21.43 2.54 -635.56 -1.61 -23.05 16 8 C -0.35 -15.92 8.49 84.04 0.71 -15.20 16 9 H 0.11 4.43 6.51 -2.91 -0.02 4.41 16 10 C 0.00 0.19 5.35 84.93 0.45 0.64 16 11 N -0.90 -47.06 10.80 21.66 0.23 -46.83 16 12 Si 0.98 36.76 29.55 68.60 2.03 38.78 16 13 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 14 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 16 C 0.48 22.14 6.51 87.66 0.57 22.71 16 17 O -0.62 -32.22 16.13 -3.05 -0.05 -32.27 16 18 C -0.05 -1.99 2.72 -11.62 -0.03 -2.02 16 19 H 0.11 3.80 6.22 -2.38 -0.01 3.78 16 20 C -0.09 -3.05 6.59 31.51 0.21 -2.85 16 21 C -0.08 -2.22 6.76 30.52 0.21 -2.02 16 22 C -0.06 -1.98 6.14 -19.60 -0.12 -2.10 16 23 C -0.15 -4.11 10.02 22.34 0.22 -3.89 16 24 C 0.08 2.28 7.30 22.35 0.16 2.44 16 25 F -0.14 -3.84 17.27 44.97 0.78 -3.06 16 26 C -0.15 -3.99 10.03 22.29 0.22 -3.76 16 27 C -0.08 -2.38 10.04 22.29 0.22 -2.15 16 28 C -0.09 -3.11 4.98 -19.58 -0.10 -3.21 16 29 H 0.06 1.44 8.13 -2.39 -0.02 1.43 16 30 H 0.14 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 32 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 33 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 34 H 0.02 1.30 7.51 -2.39 -0.02 1.29 16 35 H 0.11 5.98 5.22 -2.39 -0.01 5.97 16 36 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 37 H 0.06 2.22 7.89 -2.38 -0.02 2.20 16 38 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 42 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 43 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -65.08 368.56 7.26 -57.82 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 1.04 Total: 33.13 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.04 Total: 11.68 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -1.38 Total: -69.88 kcal Atomic # 8 Polarization: -68.22 SS G_CDS: -0.25 Total: -68.47 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.78 Total: -3.06 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.78 kcal Total: -65.08 7.26 -57.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871348436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.989 kcal (2) G-P(sol) polarization free energy of solvation -65.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds