Wall clock time and date at job start Tue Mar 31 2020 19:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00065 * 2 1 4 4 O 1.20821 * 119.99793 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00005 * 179.97438 * 3 2 1 6 6 H 1.09006 * 112.85134 * 297.94871 * 5 3 2 7 7 C 1.53777 * 113.61327 * 166.64066 * 5 3 2 8 8 C 1.54052 * 87.07777 * 220.02204 * 7 5 3 9 9 C 1.53779 * 86.98574 * 25.43275 * 8 7 5 10 10 H 1.08994 * 113.61658 * 219.98067 * 9 8 7 11 11 C 1.50697 * 113.61632 * 89.16020 * 9 8 7 12 12 O 1.21291 * 119.99963 * 303.25815 * 11 9 8 13 13 N 1.34769 * 120.00321 * 123.25630 * 11 9 8 14 14 C 1.46501 * 120.00032 * 4.57909 * 13 11 9 15 15 C 1.50697 * 109.47209 * 270.00407 * 14 13 11 16 16 H 1.08001 * 120.00478 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00186 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99857 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00358 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46775 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46960 * 119.99928 * 19 17 15 22 22 H 1.48497 * 109.47396 * 240.00104 * 19 17 15 23 23 C 1.40027 * 120.00520 * 184.58215 * 13 11 9 24 24 C 1.38847 * 120.04938 * 67.89459 * 23 13 11 25 25 C 1.38108 * 119.95859 * 180.25915 * 24 23 13 26 26 C 1.38478 * 120.04293 * 359.42149 * 25 24 23 27 27 F 1.35099 * 119.95427 * 180.29692 * 26 25 24 28 28 C 1.38469 * 120.08948 * 0.60354 * 26 25 24 29 29 C 1.38115 * 120.04429 * 359.67810 * 28 26 25 30 30 H 1.09005 * 109.47393 * 60.00621 * 1 2 3 31 31 H 1.09000 * 109.47426 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47499 * 300.00424 * 1 2 3 33 33 H 1.09004 * 113.61826 * 334.56667 * 7 5 3 34 34 H 1.08998 * 113.61507 * 105.38587 * 7 5 3 35 35 H 1.09006 * 113.61353 * 270.92681 * 8 7 5 36 36 H 1.09001 * 113.69519 * 139.94490 * 8 7 5 37 37 H 1.09009 * 109.46803 * 29.99912 * 14 13 11 38 38 H 1.08995 * 109.47766 * 149.99899 * 14 13 11 39 39 H 0.96995 * 119.99609 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.01841 * 359.97438 * 24 23 13 41 41 H 1.07996 * 119.97929 * 179.72694 * 25 24 23 42 42 H 1.08002 * 119.97890 * 179.69547 * 28 26 25 43 43 H 1.07998 * 120.02041 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0133 0.8270 0.8882 7 6 4.1098 2.6760 -0.3250 8 6 5.1964 1.9740 -1.1614 9 6 4.2082 0.8059 -1.3158 10 1 4.6779 -0.1753 -1.2473 11 6 3.2998 0.9376 -2.5109 12 8 2.6005 1.9207 -2.6357 13 7 3.2644 -0.0369 -3.4412 14 6 4.0322 -1.2685 -3.2414 15 6 5.4092 -1.1032 -3.8308 16 1 5.6849 -0.1739 -4.3070 17 6 6.3174 -2.1385 -3.7621 18 7 5.9819 -3.2701 -3.1818 19 14 8.0241 -1.9339 -4.4933 20 1 8.1499 -0.5774 -5.0846 21 1 9.0433 -2.1062 -3.4271 22 1 8.2357 -2.9554 -5.5501 23 6 2.4938 0.1276 -4.5987 24 6 2.8541 1.0781 -5.5445 25 6 2.0897 1.2425 -6.6830 26 6 0.9714 0.4519 -6.8873 27 9 0.2283 0.6102 -8.0044 28 6 0.6100 -0.4963 -5.9451 29 6 1.3684 -0.6598 -4.8025 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.4259 3.2827 -0.9187 34 1 4.5000 3.2058 0.5439 35 1 6.0893 1.7181 -0.5909 36 1 5.4231 2.4809 -2.0994 37 1 4.1161 -1.4753 -2.1744 38 1 3.5236 -2.0977 -3.7332 39 1 6.6207 -3.9984 -3.1339 40 1 3.7290 1.6917 -5.3878 41 1 2.3672 1.9848 -7.4167 42 1 -0.2654 -1.1085 -6.1039 43 1 1.0864 -1.3997 -4.0681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874446822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:28 Heat of formation + Delta-G solvation = -108.161999 kcal Electronic energy + Delta-G solvation = -30041.348208 eV Core-core repulsion = 25774.451161 eV Total energy + Delta-G solvation = -4266.897046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.65873 -41.04494 -39.72828 -38.54278 -36.82504 -35.90701 -35.06746 -32.70122 -30.90069 -29.57152 -28.44538 -27.24324 -26.18781 -26.04014 -23.36507 -22.63125 -22.46185 -21.35068 -20.28832 -18.29997 -17.74729 -17.40165 -16.89346 -16.78764 -16.47137 -16.11118 -15.92467 -15.58809 -15.32654 -14.79562 -14.42305 -14.18890 -14.13116 -13.87035 -13.31901 -13.17058 -12.95285 -12.77512 -12.67363 -12.53102 -12.25603 -11.97430 -11.92920 -11.67047 -11.61409 -11.21811 -11.14496 -10.93683 -10.84987 -10.78866 -10.56103 -10.33295 -10.06813 -9.94300 -9.90823 -9.18720 -8.84232 -8.65941 -8.59455 -7.75948 -6.28044 -4.35820 1.39501 1.51708 2.49922 2.92255 3.01596 3.16082 3.25623 3.28737 3.57131 3.87739 4.25646 4.50580 4.51720 4.74379 4.90191 4.99598 5.05953 5.07155 5.07840 5.19543 5.23440 5.32823 5.47428 5.52362 5.61982 5.65507 5.71415 5.83808 5.93981 6.08453 6.13065 6.15331 6.18288 6.35091 6.42431 6.58456 6.63501 6.65137 6.73322 7.00766 7.08790 7.46704 7.66311 7.90791 8.02520 8.04902 8.64751 8.79207 9.32195 10.78880 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.006887 B = 0.006450 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4064.907546 B = 4340.097900 C = 6975.023675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.473 3.527 4 O -0.496 6.496 5 C -0.094 4.094 6 H 0.131 0.869 7 C -0.116 4.116 8 C -0.112 4.112 9 C -0.119 4.119 10 H 0.127 0.873 11 C 0.534 3.466 12 O -0.545 6.545 13 N -0.555 5.555 14 C 0.237 3.763 15 C -0.538 4.538 16 H 0.063 0.937 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.168 3.832 24 C -0.079 4.079 25 C -0.144 4.144 26 C 0.080 3.920 27 F -0.147 7.147 28 C -0.144 4.144 29 C -0.096 4.096 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.040 0.960 39 H 0.266 0.734 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.809 4.773 3.431 8.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.315 3.685 4 O -0.383 6.383 5 C -0.113 4.113 6 H 0.149 0.851 7 C -0.154 4.154 8 C -0.150 4.150 9 C -0.140 4.140 10 H 0.145 0.855 11 C 0.323 3.677 12 O -0.423 6.423 13 N -0.282 5.282 14 C 0.119 3.881 15 C -0.577 4.577 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 C 0.077 3.923 24 C -0.098 4.098 25 C -0.163 4.163 26 C 0.061 3.939 27 F -0.125 7.125 28 C -0.163 4.163 29 C -0.116 4.116 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.350 5.379 3.399 8.989 hybrid contribution 0.741 -0.289 -0.662 1.035 sum -5.608 5.090 2.737 8.053 Atomic orbital electron populations 1.23184 0.76995 1.03293 1.02180 1.86539 1.22941 1.33683 1.84259 1.23480 0.91664 0.81317 0.72048 1.90612 1.66789 1.36361 1.44502 1.22542 0.87332 1.01334 1.00118 0.85134 1.23076 0.97803 0.94118 1.00357 1.22720 0.96321 0.94850 1.01133 1.22466 0.96854 1.03915 0.90733 0.85481 1.19964 0.82021 0.82026 0.83678 1.90703 1.43152 1.30686 1.77738 1.45916 1.45243 1.20351 1.16654 1.19674 0.90441 0.79513 0.98489 1.21446 0.96999 1.00585 1.38657 0.91909 1.24912 0.98889 0.94845 0.94929 1.69925 1.35821 1.04033 1.42873 0.86461 0.83717 0.78425 0.79043 1.19609 1.20706 1.20831 1.17593 0.90970 0.95822 0.87957 1.21100 0.98882 0.97973 0.91871 1.20926 0.95177 1.00917 0.99285 1.17622 0.92576 0.99169 0.84577 1.91454 1.75841 1.95068 1.50174 1.20883 1.01735 0.99444 0.94287 1.21077 0.93226 0.99975 0.97309 0.92063 0.88372 0.92345 0.87562 0.90846 0.88637 0.90359 0.93452 0.94184 0.92426 0.85167 0.84902 0.84844 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.55 16 2 O -0.36 -5.86 10.57 -39.26 -0.41 -6.28 16 3 C 0.47 8.19 5.52 36.00 0.20 8.39 16 4 O -0.50 -9.71 15.60 -20.89 -0.33 -10.04 16 5 C -0.09 -1.40 4.21 -90.96 -0.38 -1.78 16 6 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 7 C -0.12 -1.66 6.88 -25.78 -0.18 -1.83 16 8 C -0.11 -1.61 7.67 -25.78 -0.20 -1.81 16 9 C -0.12 -2.01 3.79 -90.96 -0.35 -2.36 16 10 H 0.13 2.28 5.74 -51.93 -0.30 1.98 16 11 C 0.53 10.57 6.05 -10.99 -0.07 10.50 16 12 O -0.54 -11.77 13.81 4.01 0.06 -11.71 16 13 N -0.55 -11.27 2.51 -114.72 -0.29 -11.56 16 14 C 0.24 5.29 4.73 -5.19 -0.02 5.26 16 15 C -0.54 -13.10 9.37 -34.44 -0.32 -13.42 16 16 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 17 C 0.07 1.69 5.46 -17.81 -0.10 1.60 16 18 N -0.89 -23.18 13.29 55.43 0.74 -22.44 16 19 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 C 0.17 3.25 4.75 -83.66 -0.40 2.85 16 24 C -0.08 -1.42 9.54 -39.40 -0.38 -1.80 16 25 C -0.14 -2.28 10.02 -39.54 -0.40 -2.68 16 26 C 0.08 1.26 7.30 -39.41 -0.29 0.97 16 27 F -0.15 -2.24 17.26 2.25 0.04 -2.20 16 28 C -0.14 -2.20 10.02 -39.54 -0.40 -2.60 16 29 C -0.10 -1.65 9.69 -39.40 -0.38 -2.03 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.11 1.82 6.52 -51.93 -0.34 1.48 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 37 H 0.05 1.07 6.07 -51.92 -0.31 0.76 16 38 H 0.04 0.95 7.86 -51.93 -0.41 0.55 16 39 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 40 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 41 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -29.87 370.92 -7.77 -37.64 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.55 Total: 5.60 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.58 Total: 0.82 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.45 Total: -34.00 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.69 Total: -28.02 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.87 -7.77 -37.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874446822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.526 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds