Wall clock time and date at job start Tue Mar 31 2020 19:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00065 * 2 1 4 4 O 1.20821 * 119.99793 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00005 * 179.97438 * 3 2 1 6 6 H 1.09006 * 112.85134 * 297.94871 * 5 3 2 7 7 C 1.53777 * 113.61327 * 166.64066 * 5 3 2 8 8 C 1.54052 * 87.07777 * 220.02204 * 7 5 3 9 9 C 1.53779 * 86.98574 * 25.43275 * 8 7 5 10 10 H 1.08994 * 113.61658 * 219.98067 * 9 8 7 11 11 C 1.50697 * 113.61632 * 89.16020 * 9 8 7 12 12 O 1.21291 * 119.99963 * 303.25815 * 11 9 8 13 13 N 1.34769 * 120.00321 * 123.25630 * 11 9 8 14 14 C 1.46501 * 120.00032 * 4.57909 * 13 11 9 15 15 C 1.50697 * 109.47209 * 270.00407 * 14 13 11 16 16 H 1.08001 * 120.00478 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00186 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99857 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00358 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46775 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46960 * 119.99928 * 19 17 15 22 22 H 1.48497 * 109.47396 * 240.00104 * 19 17 15 23 23 C 1.40027 * 120.00520 * 184.58215 * 13 11 9 24 24 C 1.38847 * 120.04938 * 67.89459 * 23 13 11 25 25 C 1.38108 * 119.95859 * 180.25915 * 24 23 13 26 26 C 1.38478 * 120.04293 * 359.42149 * 25 24 23 27 27 F 1.35099 * 119.95427 * 180.29692 * 26 25 24 28 28 C 1.38469 * 120.08948 * 0.60354 * 26 25 24 29 29 C 1.38115 * 120.04429 * 359.67810 * 28 26 25 30 30 H 1.09005 * 109.47393 * 60.00621 * 1 2 3 31 31 H 1.09000 * 109.47426 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47499 * 300.00424 * 1 2 3 33 33 H 1.09004 * 113.61826 * 334.56667 * 7 5 3 34 34 H 1.08998 * 113.61507 * 105.38587 * 7 5 3 35 35 H 1.09006 * 113.61353 * 270.92681 * 8 7 5 36 36 H 1.09001 * 113.69519 * 139.94490 * 8 7 5 37 37 H 1.09009 * 109.46803 * 29.99912 * 14 13 11 38 38 H 1.08995 * 109.47766 * 149.99899 * 14 13 11 39 39 H 0.96995 * 119.99609 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.01841 * 359.97438 * 24 23 13 41 41 H 1.07996 * 119.97929 * 179.72694 * 25 24 23 42 42 H 1.08002 * 119.97890 * 179.69547 * 28 26 25 43 43 H 1.07998 * 120.02041 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0133 0.8270 0.8882 7 6 4.1098 2.6760 -0.3250 8 6 5.1964 1.9740 -1.1614 9 6 4.2082 0.8059 -1.3158 10 1 4.6779 -0.1753 -1.2473 11 6 3.2998 0.9376 -2.5109 12 8 2.6005 1.9207 -2.6357 13 7 3.2644 -0.0369 -3.4412 14 6 4.0322 -1.2685 -3.2414 15 6 5.4092 -1.1032 -3.8308 16 1 5.6849 -0.1739 -4.3070 17 6 6.3174 -2.1385 -3.7621 18 7 5.9819 -3.2701 -3.1818 19 14 8.0241 -1.9339 -4.4933 20 1 8.1499 -0.5774 -5.0846 21 1 9.0433 -2.1062 -3.4271 22 1 8.2357 -2.9554 -5.5501 23 6 2.4938 0.1276 -4.5987 24 6 2.8541 1.0781 -5.5445 25 6 2.0897 1.2425 -6.6830 26 6 0.9714 0.4519 -6.8873 27 9 0.2283 0.6102 -8.0044 28 6 0.6100 -0.4963 -5.9451 29 6 1.3684 -0.6598 -4.8025 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.4259 3.2827 -0.9187 34 1 4.5000 3.2058 0.5439 35 1 6.0893 1.7181 -0.5909 36 1 5.4231 2.4809 -2.0994 37 1 4.1161 -1.4753 -2.1744 38 1 3.5236 -2.0977 -3.7332 39 1 6.6207 -3.9984 -3.1339 40 1 3.7290 1.6917 -5.3878 41 1 2.3672 1.9848 -7.4167 42 1 -0.2654 -1.1085 -6.1039 43 1 1.0864 -1.3997 -4.0681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874446822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:28 Heat of formation + Delta-G solvation = -122.349225 kcal Electronic energy + Delta-G solvation = -30041.963412 eV Core-core repulsion = 25774.451161 eV Total energy + Delta-G solvation = -4267.512251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.91367 -42.40682 -41.12332 -39.85352 -38.17303 -37.25140 -36.70383 -34.55041 -32.21273 -31.02354 -29.60346 -29.00316 -27.48322 -27.20619 -25.08795 -24.02477 -23.81796 -22.61428 -21.61526 -19.67692 -19.07576 -18.76283 -18.60293 -18.24482 -17.90887 -17.43531 -17.34276 -17.02482 -16.58894 -16.31582 -15.82664 -15.63781 -15.47371 -15.14469 -14.59548 -14.50655 -14.35286 -14.23118 -14.05848 -13.86366 -13.77443 -13.47689 -13.22803 -13.15917 -12.87163 -12.82587 -12.66730 -12.40850 -12.19714 -12.16256 -12.00604 -11.80245 -11.70789 -11.34737 -11.24832 -10.74587 -10.50996 -10.14987 -10.11835 -9.26947 -8.18863 -6.32640 0.03771 0.20317 1.16433 1.42662 1.46366 1.51559 1.57362 1.75139 2.10976 2.42881 2.53627 3.12757 3.20924 3.30465 3.52872 3.58068 3.73396 3.81779 3.86090 4.01129 4.19567 4.22959 4.25414 4.28587 4.36466 4.42688 4.56450 4.63196 4.74851 4.82134 4.85089 4.96614 4.98346 5.04004 5.05020 5.09138 5.18972 5.37561 5.39754 5.44566 5.60517 5.72542 5.98223 6.03575 6.41038 6.74553 6.77402 7.20113 7.39366 8.87255 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.006887 B = 0.006450 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4064.907546 B = 4340.097900 C = 6975.023675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.468 3.532 4 O -0.526 6.526 5 C -0.089 4.089 6 H 0.170 0.830 7 C -0.109 4.109 8 C -0.103 4.103 9 C -0.130 4.130 10 H 0.116 0.884 11 C 0.530 3.470 12 O -0.568 6.568 13 N -0.557 5.557 14 C 0.254 3.746 15 C -0.541 4.541 16 H 0.053 0.947 17 C 0.028 3.972 18 N -0.916 5.916 19 Si 0.952 3.048 20 H -0.271 1.271 21 H -0.273 1.273 22 H -0.285 1.285 23 C 0.133 3.867 24 C -0.096 4.096 25 C -0.139 4.139 26 C 0.079 3.921 27 F -0.140 7.140 28 C -0.134 4.134 29 C -0.106 4.106 30 H 0.044 0.956 31 H 0.130 0.870 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.128 0.872 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.021 0.979 39 H 0.268 0.732 40 H 0.122 0.878 41 H 0.159 0.841 42 H 0.166 0.834 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.362 4.764 3.641 8.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.285 6.285 3 C 0.312 3.688 4 O -0.415 6.415 5 C -0.108 4.108 6 H 0.187 0.813 7 C -0.146 4.146 8 C -0.141 4.141 9 C -0.151 4.151 10 H 0.134 0.866 11 C 0.320 3.680 12 O -0.448 6.448 13 N -0.283 5.283 14 C 0.135 3.865 15 C -0.580 4.580 16 H 0.072 0.928 17 C -0.173 4.173 18 N -0.555 5.555 19 Si 0.778 3.222 20 H -0.196 1.196 21 H -0.198 1.198 22 H -0.211 1.211 23 C 0.042 3.958 24 C -0.115 4.115 25 C -0.158 4.158 26 C 0.060 3.940 27 F -0.119 7.119 28 C -0.153 4.153 29 C -0.126 4.126 30 H 0.063 0.937 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.146 0.854 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.141 0.859 41 H 0.176 0.824 42 H 0.183 0.817 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.910 5.365 3.601 8.756 hybrid contribution 0.479 -0.299 -0.802 0.981 sum -5.430 5.066 2.799 7.936 Atomic orbital electron populations 1.23447 0.75414 1.05358 1.01967 1.86531 1.24679 1.33377 1.83895 1.23982 0.92641 0.81091 0.71117 1.90591 1.67635 1.37247 1.46003 1.22797 0.85938 1.01800 1.00306 0.81259 1.22958 0.96904 0.93668 1.01070 1.22808 0.96991 0.93188 1.01075 1.22530 0.97516 1.04364 0.90674 0.86564 1.20477 0.81948 0.81427 0.84155 1.90684 1.44271 1.31449 1.78395 1.45858 1.45297 1.19812 1.17347 1.19302 0.89698 0.79835 0.97657 1.21573 0.97907 1.00140 1.38332 0.92838 1.25543 1.01891 0.94581 0.95247 1.70005 1.36932 1.04647 1.43922 0.85588 0.80174 0.78061 0.78366 1.19552 1.19813 1.21061 1.17994 0.92161 0.97408 0.88251 1.21131 0.99425 0.98224 0.92758 1.21152 0.94681 1.01121 0.98836 1.17706 0.92466 0.99053 0.84765 1.91475 1.75597 1.95007 1.49794 1.21180 1.02006 0.99075 0.93039 1.21224 0.93049 0.99967 0.98323 0.93719 0.85224 0.91123 0.90881 0.87333 0.85381 0.91675 0.93886 0.96136 0.92257 0.85949 0.82380 0.81686 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.56 113.37 1.20 2.00 16 2 O -0.37 -11.98 10.57 -51.44 -0.54 -12.53 16 3 C 0.47 16.13 5.52 71.23 0.39 16.52 16 4 O -0.53 -20.81 15.60 24.03 0.37 -20.43 16 5 C -0.09 -2.56 4.21 -11.01 -0.05 -2.60 16 6 H 0.17 3.46 8.14 -2.38 -0.02 3.44 16 7 C -0.11 -2.95 6.88 31.21 0.21 -2.74 16 8 C -0.10 -2.83 7.67 31.21 0.24 -2.59 16 9 C -0.13 -4.37 3.79 -11.01 -0.04 -4.41 16 10 H 0.12 4.16 5.74 -2.39 -0.01 4.14 16 11 C 0.53 21.46 6.05 87.66 0.53 21.99 16 12 O -0.57 -25.36 13.81 -1.59 -0.02 -25.38 16 13 N -0.56 -23.26 2.51 -635.25 -1.59 -24.85 16 14 C 0.25 11.63 4.73 85.63 0.40 12.03 16 15 C -0.54 -26.61 9.37 25.60 0.24 -26.37 16 16 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 17 C 0.03 1.41 5.46 84.65 0.46 1.87 16 18 N -0.92 -47.82 13.29 21.45 0.28 -47.53 16 19 Si 0.95 39.82 29.54 68.60 2.03 41.85 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 23 C 0.13 5.24 4.75 38.12 0.18 5.43 16 24 C -0.10 -3.52 9.54 22.38 0.21 -3.31 16 25 C -0.14 -4.30 10.02 22.30 0.22 -4.07 16 26 C 0.08 2.39 7.30 22.38 0.16 2.55 16 27 F -0.14 -3.97 17.26 44.97 0.78 -3.19 16 28 C -0.13 -3.90 10.02 22.30 0.22 -3.68 16 29 C -0.11 -3.64 9.69 22.39 0.22 -3.42 16 30 H 0.04 1.28 8.13 -2.38 -0.02 1.26 16 31 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 33 H 0.07 2.52 6.52 -2.39 -0.02 2.51 16 34 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.13 2.68 8.14 -2.38 -0.02 2.66 16 36 H 0.06 1.95 8.09 -2.39 -0.02 1.94 16 37 H 0.04 2.00 6.07 -2.38 -0.01 1.99 16 38 H 0.02 1.01 7.86 -2.39 -0.02 0.99 16 39 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 40 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.16 3.97 8.06 -2.91 -0.02 3.94 16 42 H 0.17 3.68 8.06 -2.91 -0.02 3.65 16 43 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -65.25 370.92 7.15 -58.10 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 1.04 Total: 24.77 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 4.82 Total: 9.20 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -1.31 Total: -72.38 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: -0.19 Total: -58.34 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.19 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -65.25 7.15 -58.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874446822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.252 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds