Wall clock time and date at job start Tue Mar 31 2020 18:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99506 * 2 1 4 4 O 1.20828 * 120.00226 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99726 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.47167 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47302 * 183.12332 * 6 5 3 8 8 C 1.36936 * 119.99797 * 83.67527 * 7 6 5 9 9 H 1.08002 * 119.99763 * 1.58654 * 8 7 6 10 10 C 1.38811 * 119.99578 * 181.85899 * 8 7 6 11 11 N 1.31618 * 120.00312 * 30.11896 * 10 8 7 12 12 Si 1.86804 * 119.99761 * 210.10985 * 10 8 7 13 13 H 1.48501 * 109.47082 * 60.00307 * 12 10 8 14 14 H 1.48499 * 109.47138 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47401 * 300.00405 * 12 10 8 16 16 C 1.46494 * 120.00045 * 263.67885 * 7 6 5 17 17 C 1.50705 * 109.47472 * 80.83522 * 16 7 6 18 18 C 1.35316 * 126.12311 * 93.95347 * 17 16 7 19 19 C 1.39877 * 107.91774 * 179.90823 * 18 17 16 20 20 C 1.50692 * 125.89938 * 180.14384 * 19 18 17 21 21 F 1.39901 * 109.47372 * 185.23431 * 20 19 18 22 22 F 1.39904 * 109.47450 * 305.23438 * 20 19 18 23 23 F 1.39904 * 109.47324 * 65.23456 * 20 19 18 24 24 N 1.30841 * 108.19868 * 0.36383 * 19 18 17 25 25 N 1.34949 * 126.12818 * 274.26989 * 17 16 7 26 26 C 1.46501 * 126.03692 * 359.93860 * 25 17 16 27 27 H 1.08999 * 109.47032 * 60.00971 * 1 2 3 28 28 H 1.09006 * 109.46785 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47289 * 300.00155 * 1 2 3 30 30 H 1.08997 * 109.47762 * 59.99655 * 5 3 2 31 31 H 1.09000 * 109.47082 * 299.99239 * 5 3 2 32 32 H 1.09004 * 109.47015 * 63.12276 * 6 5 3 33 33 H 1.08997 * 109.47023 * 303.12324 * 6 5 3 34 34 H 0.96997 * 119.99904 * 185.27174 * 11 10 8 35 35 H 1.08996 * 109.47235 * 200.83459 * 16 7 6 36 36 H 1.09008 * 109.47246 * 320.83717 * 16 7 6 37 37 H 1.07996 * 126.04532 * 0.03813 * 18 17 16 38 38 H 1.08997 * 109.47026 * 83.78623 * 26 25 17 39 39 H 1.08993 * 109.46746 * 203.79128 * 26 25 17 40 40 H 1.09002 * 109.46740 * 323.79014 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4610 2.8196 -0.0769 8 6 6.0885 2.7432 -1.2916 9 1 5.5052 2.6517 -2.1960 10 6 7.4745 2.7776 -1.3601 11 7 8.1946 2.3016 -0.3665 12 14 8.3177 3.4994 -2.8626 13 1 7.9153 4.9200 -3.0215 14 1 9.7905 3.4179 -2.6907 15 1 7.9177 2.7337 -4.0705 16 6 6.2506 2.9785 1.1467 17 6 6.4117 1.6390 1.8183 18 6 7.4518 0.7879 1.6611 19 6 7.2132 -0.3354 2.4598 20 6 8.1173 -1.5336 2.5923 21 9 7.4931 -2.5037 3.3838 22 9 8.3781 -2.0637 1.3241 23 9 9.3204 -1.1460 3.1920 24 7 6.0670 -0.1681 3.0683 25 7 5.5417 1.0709 2.6794 26 6 4.2724 1.6482 3.1286 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.9557 0.7810 -0.8907 31 1 3.9563 0.7808 0.8892 32 1 3.6578 3.2226 0.9156 33 1 3.5642 3.2496 -0.8617 34 1 9.1600 2.3944 -0.3793 35 1 7.2325 3.3797 0.8960 36 1 5.7395 3.6645 1.8224 37 1 8.3149 0.9484 1.0321 38 1 3.4954 1.4324 2.3953 39 1 3.9959 1.2144 4.0894 40 1 4.3817 2.7275 3.2352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877710186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:40 Heat of formation + Delta-G solvation = -115.129227 kcal Electronic energy + Delta-G solvation = -30623.791996 eV Core-core repulsion = 25834.656049 eV Total energy + Delta-G solvation = -4789.135947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.67920 -47.21268 -47.17889 -40.72522 -40.21371 -36.74087 -36.01167 -33.29363 -32.36101 -30.76410 -29.56883 -27.83795 -27.54920 -25.79173 -24.61449 -24.45239 -21.73102 -20.44010 -20.16888 -19.40080 -18.06530 -17.86402 -17.56933 -17.37156 -16.58857 -16.37133 -16.17092 -15.53571 -15.19927 -14.96642 -14.14841 -14.05785 -13.98525 -13.80216 -13.62801 -13.49380 -13.35249 -13.34239 -13.19946 -13.12062 -12.79346 -12.58524 -12.23777 -12.04692 -11.86469 -11.73097 -11.47284 -11.34892 -11.01629 -10.75069 -10.70588 -10.49496 -10.29380 -10.27292 -10.08509 -9.92105 -8.86492 -8.63702 -7.74539 -7.35188 -6.02904 -3.36660 2.23211 2.40909 2.61484 2.90766 3.30152 3.33927 3.38113 3.40767 3.44118 4.25201 4.34844 4.52952 4.89791 4.96813 5.05043 5.07646 5.08556 5.14621 5.26666 5.39281 5.44149 5.47806 5.57210 5.63129 5.81132 6.00843 6.05514 6.25598 6.32079 6.50059 6.59779 6.68880 6.95273 7.21254 7.45668 7.62218 7.76132 7.93330 8.03808 8.20514 8.90176 9.52833 9.93009 10.95991 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.007834 B = 0.005924 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3573.162871 B = 4725.667922 C = 7167.365378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.514 6.514 5 C -0.148 4.148 6 C 0.160 3.840 7 N -0.579 5.579 8 C -0.258 4.258 9 H 0.083 0.917 10 C 0.009 3.991 11 N -0.886 5.886 12 Si 0.896 3.104 13 H -0.285 1.285 14 H -0.289 1.289 15 H -0.284 1.284 16 C 0.207 3.793 17 C 0.100 3.900 18 C -0.180 4.180 19 C -0.048 4.048 20 C 0.557 3.443 21 F -0.179 7.179 22 F -0.169 7.169 23 F -0.174 7.174 24 N -0.277 5.277 25 N -0.365 5.365 26 C 0.097 3.903 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.259 0.741 35 H 0.138 0.862 36 H 0.027 0.973 37 H 0.194 0.806 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -2.775 5.429 8.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.281 6.281 3 C 0.306 3.694 4 O -0.402 6.402 5 C -0.189 4.189 6 C 0.033 3.967 7 N -0.298 5.298 8 C -0.385 4.385 9 H 0.100 0.900 10 C -0.188 4.188 11 N -0.532 5.532 12 Si 0.725 3.275 13 H -0.211 1.211 14 H -0.215 1.215 15 H -0.211 1.211 16 C 0.079 3.921 17 C -0.028 4.028 18 C -0.209 4.209 19 C -0.212 4.212 20 C 0.501 3.499 21 F -0.160 7.160 22 F -0.151 7.151 23 F -0.156 7.156 24 N -0.103 5.103 25 N -0.151 5.151 26 C -0.045 4.045 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.155 0.845 36 H 0.045 0.955 37 H 0.210 0.790 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.502 -2.983 6.217 10.190 hybrid contribution 0.702 0.084 -1.233 1.421 sum -6.800 -2.900 4.984 8.915 Atomic orbital electron populations 1.23193 0.77308 1.03244 1.02238 1.86605 1.22832 1.34447 1.84225 1.24459 0.92664 0.80906 0.71412 1.90619 1.67474 1.36270 1.45886 1.22741 0.84972 1.05174 1.06008 1.20782 0.84720 0.90294 1.00952 1.44493 0.99387 1.82554 1.03327 1.19332 0.89821 1.44932 0.84410 0.89967 1.24652 0.96024 1.00094 0.98046 1.69996 1.05908 1.43384 1.33866 0.86454 0.78376 0.79932 0.82744 1.21118 1.21501 1.21068 1.20317 1.00597 0.86593 0.84629 1.22680 0.88925 1.00109 0.91055 1.22032 1.04773 0.90864 1.03257 1.22045 0.96782 0.97619 1.04744 1.16998 0.78122 0.81095 0.73660 1.93171 1.82451 1.65606 1.74762 1.93221 1.94283 1.87265 1.40285 1.93193 1.47485 1.91089 1.83799 1.77077 1.10205 0.99995 1.22979 1.48572 1.17406 1.13551 1.35560 1.21936 0.82578 0.98902 1.01087 0.92124 0.88540 0.92177 0.87539 0.88344 0.92963 0.91933 0.93011 0.84474 0.95468 0.78984 0.91087 0.89693 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.46 10.57 -39.25 -0.41 -5.88 16 3 C 0.46 7.55 7.84 36.00 0.28 7.83 16 4 O -0.51 -9.08 15.71 -18.75 -0.29 -9.37 16 5 C -0.15 -2.57 5.26 -27.88 -0.15 -2.72 16 6 C 0.16 2.91 4.60 -4.04 -0.02 2.89 16 7 N -0.58 -12.12 2.54 -174.60 -0.44 -12.56 16 8 C -0.26 -6.04 9.67 -15.06 -0.15 -6.18 16 9 H 0.08 1.93 7.99 -52.49 -0.42 1.52 16 10 C 0.01 0.20 4.89 -17.43 -0.09 0.12 16 11 N -0.89 -21.00 6.80 55.49 0.38 -20.62 16 12 Si 0.90 19.39 29.65 -169.99 -5.04 14.35 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 C 0.21 4.15 5.20 -5.19 -0.03 4.12 16 17 C 0.10 2.02 6.08 -82.26 -0.50 1.52 16 18 C -0.18 -3.87 9.61 -40.01 -0.38 -4.25 16 19 C -0.05 -0.97 6.51 -82.40 -0.54 -1.51 16 20 C 0.56 10.23 3.51 36.00 0.13 10.35 16 21 F -0.18 -3.16 17.14 2.25 0.04 -3.13 16 22 F -0.17 -3.15 17.30 2.25 0.04 -3.11 16 23 F -0.17 -3.05 17.30 2.25 0.04 -3.02 16 24 N -0.28 -5.52 12.35 33.67 0.42 -5.10 16 25 N -0.37 -6.69 3.23 -63.88 -0.21 -6.89 16 26 C 0.10 1.35 10.02 59.85 0.60 1.95 16 27 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 31 H 0.10 1.78 4.57 -51.93 -0.24 1.54 16 32 H 0.05 0.87 7.32 -51.93 -0.38 0.49 16 33 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 34 H 0.26 6.05 8.32 -40.82 -0.34 5.71 16 35 H 0.14 3.06 5.32 -51.93 -0.28 2.78 16 36 H 0.03 0.48 7.21 -51.92 -0.37 0.11 16 37 H 0.19 4.42 5.45 -52.49 -0.29 4.14 16 38 H 0.07 0.99 5.07 -51.93 -0.26 0.73 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.06 7.34 -51.93 -0.38 0.68 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -26.55 344.87 -4.34 -30.89 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.28 Total: 3.68 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 0.23 Total: 15.56 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.14 Total: -45.18 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.71 Total: -15.25 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 0.12 Total: -9.25 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.04 Total: 14.35 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.55 -4.34 -30.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.238 kcal (2) G-P(sol) polarization free energy of solvation -26.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds