Wall clock time and date at job start Tue Mar 31 2020 18:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99506 * 2 1 4 4 O 1.20828 * 120.00226 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99726 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.47167 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47302 * 183.12332 * 6 5 3 8 8 C 1.36936 * 119.99797 * 83.67527 * 7 6 5 9 9 H 1.08002 * 119.99763 * 1.58654 * 8 7 6 10 10 C 1.38811 * 119.99578 * 181.85899 * 8 7 6 11 11 N 1.31618 * 120.00312 * 30.11896 * 10 8 7 12 12 Si 1.86804 * 119.99761 * 210.10985 * 10 8 7 13 13 H 1.48501 * 109.47082 * 60.00307 * 12 10 8 14 14 H 1.48499 * 109.47138 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47401 * 300.00405 * 12 10 8 16 16 C 1.46494 * 120.00045 * 263.67885 * 7 6 5 17 17 C 1.50705 * 109.47472 * 80.83522 * 16 7 6 18 18 C 1.35316 * 126.12311 * 93.95347 * 17 16 7 19 19 C 1.39877 * 107.91774 * 179.90823 * 18 17 16 20 20 C 1.50692 * 125.89938 * 180.14384 * 19 18 17 21 21 F 1.39901 * 109.47372 * 185.23431 * 20 19 18 22 22 F 1.39904 * 109.47450 * 305.23438 * 20 19 18 23 23 F 1.39904 * 109.47324 * 65.23456 * 20 19 18 24 24 N 1.30841 * 108.19868 * 0.36383 * 19 18 17 25 25 N 1.34949 * 126.12818 * 274.26989 * 17 16 7 26 26 C 1.46501 * 126.03692 * 359.93860 * 25 17 16 27 27 H 1.08999 * 109.47032 * 60.00971 * 1 2 3 28 28 H 1.09006 * 109.46785 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47289 * 300.00155 * 1 2 3 30 30 H 1.08997 * 109.47762 * 59.99655 * 5 3 2 31 31 H 1.09000 * 109.47082 * 299.99239 * 5 3 2 32 32 H 1.09004 * 109.47015 * 63.12276 * 6 5 3 33 33 H 1.08997 * 109.47023 * 303.12324 * 6 5 3 34 34 H 0.96997 * 119.99904 * 185.27174 * 11 10 8 35 35 H 1.08996 * 109.47235 * 200.83459 * 16 7 6 36 36 H 1.09008 * 109.47246 * 320.83717 * 16 7 6 37 37 H 1.07996 * 126.04532 * 0.03813 * 18 17 16 38 38 H 1.08997 * 109.47026 * 83.78623 * 26 25 17 39 39 H 1.08993 * 109.46746 * 203.79128 * 26 25 17 40 40 H 1.09002 * 109.46740 * 323.79014 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4610 2.8196 -0.0769 8 6 6.0885 2.7432 -1.2916 9 1 5.5052 2.6517 -2.1960 10 6 7.4745 2.7776 -1.3601 11 7 8.1946 2.3016 -0.3665 12 14 8.3177 3.4994 -2.8626 13 1 7.9153 4.9200 -3.0215 14 1 9.7905 3.4179 -2.6907 15 1 7.9177 2.7337 -4.0705 16 6 6.2506 2.9785 1.1467 17 6 6.4117 1.6390 1.8183 18 6 7.4518 0.7879 1.6611 19 6 7.2132 -0.3354 2.4598 20 6 8.1173 -1.5336 2.5923 21 9 7.4931 -2.5037 3.3838 22 9 8.3781 -2.0637 1.3241 23 9 9.3204 -1.1460 3.1920 24 7 6.0670 -0.1681 3.0683 25 7 5.5417 1.0709 2.6794 26 6 4.2724 1.6482 3.1286 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.9557 0.7810 -0.8907 31 1 3.9563 0.7808 0.8892 32 1 3.6578 3.2226 0.9156 33 1 3.5642 3.2496 -0.8617 34 1 9.1600 2.3944 -0.3793 35 1 7.2325 3.3797 0.8960 36 1 5.7395 3.6645 1.8224 37 1 8.3149 0.9484 1.0321 38 1 3.4954 1.4324 2.3953 39 1 3.9959 1.2144 4.0894 40 1 4.3817 2.7275 3.2352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877710186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:39 Heat of formation + Delta-G solvation = -128.104043 kcal Electronic energy + Delta-G solvation = -30624.354626 eV Core-core repulsion = 25834.656049 eV Total energy + Delta-G solvation = -4789.698577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.13518 -48.64922 -48.64602 -42.22835 -41.48293 -38.17498 -37.39748 -34.75696 -33.90691 -32.35570 -31.08139 -29.20006 -28.60789 -27.45304 -26.05785 -25.87325 -23.23369 -21.90648 -21.53978 -20.91707 -19.52743 -19.38396 -19.11692 -18.68215 -17.97681 -17.66130 -17.49717 -16.96261 -16.72553 -16.51116 -15.61857 -15.51659 -15.48453 -15.27538 -15.07809 -14.83095 -14.80438 -14.79322 -14.66090 -14.40088 -14.23153 -13.86705 -13.61111 -13.37877 -13.24546 -13.14756 -12.93235 -12.76291 -12.66719 -12.34486 -12.17143 -11.92825 -11.81337 -11.69757 -11.63824 -11.55014 -10.40886 -10.29639 -9.32083 -9.04644 -7.80447 -5.14751 0.70620 1.10952 1.20226 1.55739 1.62243 1.65517 1.73792 1.80582 1.92457 2.60373 2.78064 3.06617 3.22589 3.42830 3.61520 3.90610 3.92184 4.03393 4.09299 4.25014 4.28285 4.31472 4.32804 4.52989 4.55101 4.62723 4.68179 4.78717 4.88656 5.01946 5.16849 5.34253 5.40851 5.56663 5.73495 5.96301 6.15936 6.37191 6.65201 6.68815 7.15108 7.81301 8.19110 9.15097 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.007834 B = 0.005924 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3573.162871 B = 4725.667922 C = 7167.365378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.373 6.373 3 C 0.472 3.528 4 O -0.527 6.527 5 C -0.137 4.137 6 C 0.164 3.836 7 N -0.588 5.588 8 C -0.267 4.267 9 H 0.075 0.925 10 C -0.023 4.023 11 N -0.892 5.892 12 Si 0.942 3.058 13 H -0.286 1.286 14 H -0.296 1.296 15 H -0.292 1.292 16 C 0.210 3.790 17 C 0.101 3.899 18 C -0.204 4.204 19 C -0.058 4.058 20 C 0.564 3.436 21 F -0.173 7.173 22 F -0.172 7.172 23 F -0.169 7.169 24 N -0.283 5.283 25 N -0.356 5.356 26 C 0.086 3.914 27 H 0.062 0.938 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.255 0.745 35 H 0.115 0.885 36 H 0.056 0.944 37 H 0.175 0.825 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.185 -2.789 6.315 10.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C 0.316 3.684 4 O -0.417 6.417 5 C -0.177 4.177 6 C 0.037 3.963 7 N -0.307 5.307 8 C -0.395 4.395 9 H 0.093 0.907 10 C -0.219 4.219 11 N -0.538 5.538 12 Si 0.772 3.228 13 H -0.213 1.213 14 H -0.222 1.222 15 H -0.218 1.218 16 C 0.082 3.918 17 C -0.028 4.028 18 C -0.233 4.233 19 C -0.221 4.221 20 C 0.508 3.492 21 F -0.154 7.154 22 F -0.154 7.154 23 F -0.151 7.151 24 N -0.109 5.109 25 N -0.141 5.141 26 C -0.054 4.054 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.132 0.868 36 H 0.074 0.926 37 H 0.191 0.809 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.195 -3.008 7.117 12.011 hybrid contribution 1.098 0.068 -1.494 1.855 sum -8.097 -2.940 5.623 10.287 Atomic orbital electron populations 1.23561 0.74757 1.05582 1.02756 1.86566 1.25285 1.33383 1.83732 1.24011 0.92082 0.81171 0.71156 1.90616 1.67660 1.36775 1.46659 1.22434 0.86140 1.04205 1.04966 1.20785 0.83124 0.90792 1.01590 1.44508 1.00469 1.82857 1.02856 1.19418 0.89992 1.44787 0.85334 0.90726 1.25067 0.96539 1.00781 0.99555 1.70137 1.05550 1.43583 1.34497 0.85758 0.77172 0.79057 0.80823 1.21303 1.22236 1.21824 1.20173 0.99846 0.86951 0.84792 1.22585 0.89075 0.99932 0.91252 1.21931 1.05114 0.92146 1.04136 1.22184 0.97231 0.97949 1.04771 1.16803 0.78054 0.80755 0.73631 1.93178 1.82398 1.65295 1.74566 1.93213 1.94293 1.87256 1.40612 1.93200 1.47149 1.91063 1.83677 1.77020 1.10031 1.00774 1.23102 1.48806 1.18051 1.12746 1.34545 1.22321 0.80627 1.00279 1.02139 0.91901 0.85401 0.91409 0.89333 0.88748 0.90887 0.92751 0.93496 0.86765 0.92611 0.80854 0.90855 0.87459 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.37 -10.40 10.57 -51.39 -0.54 -10.94 16 3 C 0.47 14.60 7.84 71.23 0.56 15.16 16 4 O -0.53 -17.58 15.71 21.96 0.34 -17.23 16 5 C -0.14 -4.60 5.26 29.85 0.16 -4.44 16 6 C 0.16 5.72 4.60 86.38 0.40 6.12 16 7 N -0.59 -24.19 2.54 -706.33 -1.79 -25.99 16 8 C -0.27 -12.54 9.67 84.03 0.81 -11.73 16 9 H 0.07 3.55 7.99 -2.91 -0.02 3.52 16 10 C -0.02 -1.12 4.89 84.86 0.42 -0.70 16 11 N -0.89 -42.91 6.80 21.65 0.15 -42.76 16 12 Si 0.94 40.33 29.65 68.60 2.03 42.37 16 13 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.30 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 16 C 0.21 8.23 5.20 85.64 0.44 8.68 16 17 C 0.10 3.97 6.08 41.41 0.25 4.22 16 18 C -0.20 -8.78 9.61 21.99 0.21 -8.56 16 19 C -0.06 -2.32 6.51 43.10 0.28 -2.04 16 20 C 0.56 20.42 3.51 71.23 0.25 20.67 16 21 F -0.17 -5.95 17.14 44.97 0.77 -5.18 16 22 F -0.17 -6.40 17.30 44.97 0.78 -5.62 16 23 F -0.17 -5.86 17.30 44.97 0.78 -5.09 16 24 N -0.28 -10.89 12.35 -47.38 -0.59 -11.47 16 25 N -0.36 -12.39 3.23 -356.03 -1.15 -13.54 16 26 C 0.09 2.14 10.02 127.77 1.28 3.42 16 27 H 0.06 1.18 8.13 -2.39 -0.02 1.17 16 28 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 30 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 31 H 0.09 3.27 4.57 -2.39 -0.01 3.25 16 32 H 0.07 2.23 7.32 -2.38 -0.02 2.22 16 33 H 0.05 1.99 7.96 -2.39 -0.02 1.97 16 34 H 0.26 12.15 8.32 -92.71 -0.77 11.38 16 35 H 0.11 5.09 5.32 -2.39 -0.01 5.08 16 36 H 0.06 1.84 7.21 -2.38 -0.02 1.82 16 37 H 0.17 8.18 5.45 -2.91 -0.02 8.17 16 38 H 0.07 1.83 5.07 -2.39 -0.01 1.82 16 39 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.11 2.25 7.34 -2.39 -0.02 2.23 16 Total: -1.00 -55.92 344.87 8.14 -47.78 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.11 Total: 15.18 kcal Atomic # 6 Polarization: 26.24 SS G_CDS: 6.25 Total: 32.49 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -3.38 Total: -93.76 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.20 Total: -28.17 kcal Atomic # 9 Polarization: -18.22 SS G_CDS: 2.33 Total: -15.89 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.37 kcal Total: -55.92 8.14 -47.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.327 kcal (2) G-P(sol) polarization free energy of solvation -55.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds