Wall clock time and date at job start Tue Mar 31 2020 18:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99937 * 2 1 4 4 C 1.50694 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.30450 * 125.98835 * 270.30158 * 4 3 2 6 6 N 1.39934 * 108.89514 * 180.15528 * 5 4 3 7 7 C 1.46507 * 125.75162 * 179.85110 * 6 5 4 8 8 C 1.34252 * 108.49433 * 359.57923 * 6 5 4 9 9 C 1.38048 * 107.41738 * 0.24745 * 8 6 5 10 10 C 1.47424 * 126.41271 * 179.97438 * 9 8 6 11 11 O 1.21608 * 119.99530 * 132.63070 * 10 9 8 12 12 N 1.34775 * 120.00231 * 312.62501 * 10 9 8 13 13 C 1.46492 * 119.99896 * 4.86463 * 12 10 9 14 14 C 1.50696 * 109.47254 * 90.00267 * 13 12 10 15 15 H 1.08001 * 119.99919 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00017 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99844 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47000 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47045 * 119.99525 * 18 16 14 21 21 H 1.48500 * 109.46848 * 239.99439 * 18 16 14 22 22 C 1.46505 * 119.99945 * 184.86654 * 12 10 9 23 23 C 1.52991 * 109.47295 * 90.96911 * 22 12 10 24 24 F 1.39908 * 109.47117 * 59.99968 * 23 22 12 25 25 F 1.39905 * 109.47399 * 179.97438 * 23 22 12 26 26 F 1.39899 * 109.47329 * 299.99908 * 23 22 12 27 27 H 1.09010 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47364 * 300.00002 * 1 2 3 29 29 H 1.08996 * 109.47468 * 60.00436 * 1 2 3 30 30 H 1.08996 * 109.46911 * 59.99549 * 3 2 1 31 31 H 1.08999 * 109.47107 * 299.99842 * 3 2 1 32 32 H 1.08996 * 109.46769 * 269.68548 * 7 6 5 33 33 H 1.08996 * 109.47083 * 29.68771 * 7 6 5 34 34 H 1.08996 * 109.47207 * 149.68860 * 7 6 5 35 35 H 1.08006 * 126.29550 * 180.22530 * 8 6 5 36 36 H 1.09000 * 109.47015 * 210.00068 * 13 12 10 37 37 H 1.09003 * 109.47378 * 329.99763 * 13 12 10 38 38 H 0.97007 * 119.99912 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.46727 * 210.97631 * 22 12 10 40 40 H 1.09005 * 109.46825 * 330.96741 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.2757 1.1206 1.0565 6 7 5.6097 1.0207 0.6457 7 6 6.7733 0.9282 1.5311 8 6 5.6430 1.0178 -0.6964 9 6 4.3406 1.1208 -1.1422 10 6 3.8970 1.1561 -2.5477 11 8 2.9751 0.4518 -2.9122 12 7 4.5130 1.9691 -3.4286 13 6 5.6902 2.7376 -3.0167 14 6 6.9346 1.9287 -3.2773 15 1 6.8565 0.9407 -3.7064 16 6 8.1730 2.4495 -2.9669 17 7 8.2682 3.6523 -2.4438 18 14 9.7156 1.4464 -3.2893 19 1 9.3397 0.1358 -3.8776 20 1 10.5945 2.1802 -4.2349 21 1 10.4386 1.2258 -2.0111 22 6 4.0054 2.0843 -4.7981 23 6 2.9930 3.2289 -4.8722 24 9 3.6153 4.4265 -4.5032 25 9 2.5087 3.3393 -6.1801 26 9 1.9298 2.9683 -4.0012 27 1 -0.3634 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 7.1433 1.9297 1.7505 33 1 6.4850 0.4358 2.4598 34 1 7.5573 0.3504 1.0417 35 1 6.5264 0.9480 -1.3138 36 1 5.7349 3.6665 -3.5853 37 1 5.6212 2.9658 -1.9530 38 1 9.1395 4.0189 -2.2258 39 1 4.8339 2.2873 -5.4767 40 1 3.5206 1.1512 -5.0855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889291621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:55 Heat of formation + Delta-G solvation = -151.057541 kcal Electronic energy + Delta-G solvation = -30906.355569 eV Core-core repulsion = 26115.661654 eV Total energy + Delta-G solvation = -4790.693915 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.63293 -47.19078 -47.07808 -40.96941 -38.68082 -37.49418 -35.21849 -33.22710 -32.91140 -30.68494 -28.96550 -28.54050 -27.15939 -26.21148 -24.80908 -23.22759 -23.16597 -21.39083 -19.89255 -18.80062 -18.08985 -18.01034 -17.27975 -16.68645 -16.33592 -16.26863 -15.77056 -15.46113 -15.15414 -14.93659 -14.83923 -14.47330 -14.07976 -14.01060 -13.91720 -13.57455 -13.31180 -13.27248 -13.22374 -12.92945 -12.59701 -12.50279 -12.30291 -12.06461 -12.02372 -11.80505 -11.69422 -11.34785 -11.16992 -11.11462 -10.92259 -10.43501 -10.38754 -9.95069 -9.47538 -9.26594 -8.99166 -8.77212 -8.08639 -7.99342 -6.37896 -4.47515 2.20776 2.48728 2.76835 3.05711 3.10100 3.17646 3.21094 3.60160 3.72839 4.13701 4.28604 4.36995 4.49816 4.75088 4.78598 4.92549 5.18703 5.27595 5.38080 5.39315 5.46814 5.52551 5.60972 5.62584 5.70912 5.74920 5.79303 5.84780 6.24940 6.26845 6.48241 6.82566 7.10339 7.31591 7.35163 7.37211 7.56513 7.86109 8.00689 8.09844 8.61118 8.87929 9.19558 10.67422 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.008392 B = 0.006597 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3335.644799 B = 4243.257015 C = 6868.064418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.375 6.375 3 C 0.151 3.849 4 C 0.115 3.885 5 N -0.297 5.297 6 N -0.366 5.366 7 C 0.102 3.898 8 C 0.129 3.871 9 C -0.274 4.274 10 C 0.601 3.399 11 O -0.546 6.546 12 N -0.595 5.595 13 C 0.231 3.769 14 C -0.548 4.548 15 H 0.067 0.933 16 C 0.068 3.932 17 N -0.879 5.879 18 Si 0.890 3.110 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.083 3.917 23 C 0.430 3.570 24 F -0.180 7.180 25 F -0.190 7.190 26 F -0.182 7.182 27 H 0.084 0.916 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.212 0.788 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.267 0.733 39 H 0.123 0.877 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 -2.159 2.679 7.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.293 6.293 3 C 0.073 3.927 4 C -0.053 4.053 5 N -0.121 5.121 6 N -0.145 5.145 7 C -0.039 4.039 8 C -0.021 4.021 9 C -0.288 4.288 10 C 0.390 3.610 11 O -0.425 6.425 12 N -0.326 5.326 13 C 0.111 3.889 14 C -0.587 4.587 15 H 0.085 0.915 16 C -0.136 4.136 17 N -0.516 5.516 18 Si 0.717 3.283 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.044 4.044 23 C 0.374 3.626 24 F -0.162 7.162 25 F -0.172 7.172 26 F -0.163 7.163 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.228 0.772 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.141 0.859 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.289 -2.544 3.963 7.857 hybrid contribution 0.854 0.225 -1.097 1.408 sum -5.435 -2.319 2.865 6.567 Atomic orbital electron populations 1.22698 0.81156 1.02557 0.99760 1.87970 1.19298 1.26654 1.95328 1.20466 0.85716 0.85514 1.01017 1.21679 0.94849 0.99088 0.89634 1.76936 0.86915 1.25537 1.22686 1.48218 1.05588 1.55277 1.05401 1.21894 0.84189 1.03665 0.94130 1.24255 1.00312 0.93504 0.83981 1.19855 0.92533 1.22829 0.93585 1.17365 0.80966 0.78487 0.84166 1.90718 1.30399 1.42071 1.79262 1.48016 1.31116 1.45073 1.08425 1.19689 0.80178 0.91378 0.97633 1.21585 0.90648 1.02979 1.43442 0.91457 1.24981 0.99019 0.94980 0.94669 1.69953 1.25161 1.15325 1.41122 0.86550 0.82827 0.80503 0.78401 1.19348 1.20559 1.20685 1.22362 0.96972 0.96435 0.88641 1.21616 0.82534 0.85377 0.73039 1.93194 1.82190 1.49381 1.91390 1.93138 1.89446 1.96599 1.38032 1.93178 1.59232 1.93944 1.69960 0.89764 0.94431 0.93862 0.92128 0.91227 0.90332 0.89541 0.89166 0.77202 0.93879 0.93465 0.92273 0.85891 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.01 101.05 1.11 1.56 16 2 O -0.38 -6.64 10.69 -35.23 -0.38 -7.02 16 3 C 0.15 2.62 6.22 36.00 0.22 2.85 16 4 C 0.11 2.28 6.89 -82.02 -0.57 1.71 16 5 N -0.30 -5.71 12.50 33.89 0.42 -5.28 16 6 N -0.37 -6.48 3.98 -67.60 -0.27 -6.75 16 7 C 0.10 1.29 11.44 59.85 0.68 1.98 16 8 C 0.13 2.52 9.30 -16.56 -0.15 2.37 16 9 C -0.27 -5.70 5.07 -105.07 -0.53 -6.23 16 10 C 0.60 12.86 6.81 -12.52 -0.09 12.78 16 11 O -0.55 -12.43 16.29 5.27 0.09 -12.34 16 12 N -0.60 -12.09 2.37 -176.34 -0.42 -12.51 16 13 C 0.23 5.12 4.51 -5.20 -0.02 5.10 16 14 C -0.55 -12.57 6.83 -34.44 -0.24 -12.81 16 15 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 16 C 0.07 1.60 5.45 -17.82 -0.10 1.50 16 17 N -0.88 -21.91 13.29 55.43 0.74 -21.17 16 18 Si 0.89 18.23 29.54 -169.99 -5.02 13.21 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 C 0.08 1.43 5.48 -4.04 -0.02 1.41 16 23 C 0.43 7.39 3.29 37.15 0.12 7.51 16 24 F -0.18 -3.32 16.13 2.25 0.04 -3.29 16 25 F -0.19 -2.99 17.32 2.25 0.04 -2.95 16 26 F -0.18 -3.36 16.59 2.25 0.04 -3.32 16 27 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.21 4.22 5.37 -52.48 -0.28 3.94 16 36 H 0.04 1.02 7.16 -51.93 -0.37 0.65 16 37 H 0.05 1.13 5.86 -51.93 -0.30 0.82 16 38 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 39 H 0.12 1.93 8.08 -51.93 -0.42 1.51 16 40 H 0.12 1.94 7.33 -51.93 -0.38 1.56 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -29.49 357.22 -3.59 -33.09 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.68 Total: 3.23 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: 0.43 Total: 19.72 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.47 Total: -45.71 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.29 Total: -19.36 kcal Atomic # 9 Polarization: -9.67 SS G_CDS: 0.11 Total: -9.56 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.49 -3.59 -33.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889291621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.970 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds