Wall clock time and date at job start Tue Mar 31 2020 18:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99937 * 2 1 4 4 C 1.50694 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.30450 * 125.98835 * 270.30158 * 4 3 2 6 6 N 1.39934 * 108.89514 * 180.15528 * 5 4 3 7 7 C 1.46507 * 125.75162 * 179.85110 * 6 5 4 8 8 C 1.34252 * 108.49433 * 359.57923 * 6 5 4 9 9 C 1.38048 * 107.41738 * 0.24745 * 8 6 5 10 10 C 1.47424 * 126.41271 * 179.97438 * 9 8 6 11 11 O 1.21608 * 119.99530 * 132.63070 * 10 9 8 12 12 N 1.34775 * 120.00231 * 312.62501 * 10 9 8 13 13 C 1.46492 * 119.99896 * 4.86463 * 12 10 9 14 14 C 1.50696 * 109.47254 * 90.00267 * 13 12 10 15 15 H 1.08001 * 119.99919 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00017 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99844 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47000 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47045 * 119.99525 * 18 16 14 21 21 H 1.48500 * 109.46848 * 239.99439 * 18 16 14 22 22 C 1.46505 * 119.99945 * 184.86654 * 12 10 9 23 23 C 1.52991 * 109.47295 * 90.96911 * 22 12 10 24 24 F 1.39908 * 109.47117 * 59.99968 * 23 22 12 25 25 F 1.39905 * 109.47399 * 179.97438 * 23 22 12 26 26 F 1.39899 * 109.47329 * 299.99908 * 23 22 12 27 27 H 1.09010 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47364 * 300.00002 * 1 2 3 29 29 H 1.08996 * 109.47468 * 60.00436 * 1 2 3 30 30 H 1.08996 * 109.46911 * 59.99549 * 3 2 1 31 31 H 1.08999 * 109.47107 * 299.99842 * 3 2 1 32 32 H 1.08996 * 109.46769 * 269.68548 * 7 6 5 33 33 H 1.08996 * 109.47083 * 29.68771 * 7 6 5 34 34 H 1.08996 * 109.47207 * 149.68860 * 7 6 5 35 35 H 1.08006 * 126.29550 * 180.22530 * 8 6 5 36 36 H 1.09000 * 109.47015 * 210.00068 * 13 12 10 37 37 H 1.09003 * 109.47378 * 329.99763 * 13 12 10 38 38 H 0.97007 * 119.99912 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.46727 * 210.97631 * 22 12 10 40 40 H 1.09005 * 109.46825 * 330.96741 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.2757 1.1206 1.0565 6 7 5.6097 1.0207 0.6457 7 6 6.7733 0.9282 1.5311 8 6 5.6430 1.0178 -0.6964 9 6 4.3406 1.1208 -1.1422 10 6 3.8970 1.1561 -2.5477 11 8 2.9751 0.4518 -2.9122 12 7 4.5130 1.9691 -3.4286 13 6 5.6902 2.7376 -3.0167 14 6 6.9346 1.9287 -3.2773 15 1 6.8565 0.9407 -3.7064 16 6 8.1730 2.4495 -2.9669 17 7 8.2682 3.6523 -2.4438 18 14 9.7156 1.4464 -3.2893 19 1 9.3397 0.1358 -3.8776 20 1 10.5945 2.1802 -4.2349 21 1 10.4386 1.2258 -2.0111 22 6 4.0054 2.0843 -4.7981 23 6 2.9930 3.2289 -4.8722 24 9 3.6153 4.4265 -4.5032 25 9 2.5087 3.3393 -6.1801 26 9 1.9298 2.9683 -4.0012 27 1 -0.3634 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 7.1433 1.9297 1.7505 33 1 6.4850 0.4358 2.4598 34 1 7.5573 0.3504 1.0417 35 1 6.5264 0.9480 -1.3138 36 1 5.7349 3.6665 -3.5853 37 1 5.6212 2.9658 -1.9530 38 1 9.1395 4.0189 -2.2258 39 1 4.8339 2.2873 -5.4767 40 1 3.5206 1.1512 -5.0855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889291621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:54 Heat of formation + Delta-G solvation = -169.300589 kcal Electronic energy + Delta-G solvation = -30907.146647 eV Core-core repulsion = 26115.661654 eV Total energy + Delta-G solvation = -4791.484993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.05083 -48.57176 -48.54147 -42.43809 -40.30159 -38.74357 -36.90244 -34.68624 -34.54069 -32.20522 -30.39267 -29.86685 -28.86199 -27.35543 -26.09978 -24.95917 -24.62449 -22.86655 -21.37261 -20.28485 -19.52358 -19.43681 -18.90018 -18.26029 -17.97738 -17.56613 -17.26068 -16.75208 -16.60351 -16.27072 -16.24747 -15.97941 -15.57942 -15.43765 -15.39189 -14.99098 -14.76256 -14.70564 -14.66229 -14.45161 -14.09337 -13.74619 -13.54653 -13.49534 -13.36176 -13.19459 -13.10361 -12.90866 -12.76327 -12.60235 -12.30946 -12.10017 -11.91099 -11.69834 -10.97828 -10.65342 -10.59899 -10.38402 -9.74666 -9.52722 -8.18724 -6.34061 0.72107 0.97751 1.43360 1.45270 1.52049 1.60061 1.66542 2.07861 2.16791 2.44344 2.90565 3.03219 3.08575 3.12598 3.34248 3.47322 3.84594 3.93718 4.14176 4.24495 4.29571 4.34770 4.40476 4.42729 4.54786 4.58578 4.67532 4.75329 4.77280 4.84915 4.86162 5.25696 5.36321 5.59876 5.74421 5.97535 6.05219 6.17703 6.37706 6.56106 6.79773 7.21309 7.37586 8.87009 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.008392 B = 0.006597 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3335.644799 B = 4243.257015 C = 6868.064418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.154 3.846 4 C 0.101 3.899 5 N -0.303 5.303 6 N -0.360 5.360 7 C 0.090 3.910 8 C 0.127 3.873 9 C -0.301 4.301 10 C 0.600 3.400 11 O -0.565 6.565 12 N -0.596 5.596 13 C 0.248 3.752 14 C -0.546 4.546 15 H 0.065 0.935 16 C 0.035 3.965 17 N -0.910 5.910 18 Si 0.949 3.051 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.079 3.921 23 C 0.436 3.564 24 F -0.188 7.188 25 F -0.178 7.178 26 F -0.190 7.190 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.206 0.794 36 H 0.027 0.973 37 H 0.029 0.971 38 H 0.269 0.731 39 H 0.140 0.860 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 -2.854 3.051 7.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.322 6.322 3 C 0.076 3.924 4 C -0.066 4.066 5 N -0.127 5.127 6 N -0.139 5.139 7 C -0.049 4.049 8 C -0.024 4.024 9 C -0.316 4.316 10 C 0.390 3.610 11 O -0.445 6.445 12 N -0.327 5.327 13 C 0.128 3.872 14 C -0.584 4.584 15 H 0.083 0.917 16 C -0.167 4.167 17 N -0.548 5.548 18 Si 0.774 3.226 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.047 4.047 23 C 0.380 3.620 24 F -0.170 7.170 25 F -0.160 7.160 26 F -0.171 7.171 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.223 0.777 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.158 0.842 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.889 -3.240 4.343 8.003 hybrid contribution 0.702 0.447 -1.201 1.461 sum -5.187 -2.793 3.142 6.677 Atomic orbital electron populations 1.22947 0.78808 1.04058 1.00926 1.87916 1.21931 1.26821 1.95542 1.20475 0.84554 0.85742 1.01634 1.22074 0.96108 0.99050 0.89333 1.76881 0.87582 1.25587 1.22621 1.48624 1.06215 1.53735 1.05327 1.22332 0.83118 1.04923 0.94542 1.24084 0.99642 0.93761 0.84944 1.20045 0.93483 1.24320 0.93738 1.17497 0.80659 0.78250 0.84571 1.90690 1.31211 1.42891 1.79688 1.47953 1.30616 1.44541 1.09545 1.19332 0.80794 0.90808 0.96232 1.21638 0.90986 1.02732 1.43077 0.91719 1.25552 1.01321 0.95583 0.94280 1.70046 1.25835 1.16728 1.42175 0.85642 0.79588 0.79029 0.78311 1.19190 1.21193 1.19743 1.22576 0.97664 0.97032 0.87397 1.21491 0.82235 0.84937 0.73292 1.93182 1.82354 1.49898 1.91548 1.93161 1.89266 1.96520 1.37047 1.93166 1.59605 1.93965 1.70381 0.88166 0.92091 0.93810 0.89827 0.92139 0.89464 0.87316 0.87202 0.77731 0.95528 0.95257 0.92166 0.84218 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.93 16 2 O -0.40 -14.06 10.69 -148.98 -1.59 -15.65 16 3 C 0.15 5.30 6.22 71.23 0.44 5.74 16 4 C 0.10 4.01 6.89 43.51 0.30 4.31 16 5 N -0.30 -11.40 12.50 -46.68 -0.58 -11.99 16 6 N -0.36 -12.44 3.98 -367.78 -1.46 -13.90 16 7 C 0.09 2.09 11.44 127.77 1.46 3.55 16 8 C 0.13 4.95 9.30 84.28 0.78 5.73 16 9 C -0.30 -12.64 5.07 -20.15 -0.10 -12.74 16 10 C 0.60 25.87 6.81 86.66 0.59 26.46 16 11 O -0.57 -25.83 16.29 -4.06 -0.07 -25.89 16 12 N -0.60 -24.24 2.37 -830.06 -1.97 -26.21 16 13 C 0.25 11.12 4.51 85.63 0.39 11.50 16 14 C -0.55 -24.84 6.83 25.60 0.17 -24.66 16 15 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 16 C 0.03 1.60 5.45 84.66 0.46 2.07 16 17 N -0.91 -45.11 13.29 21.45 0.28 -44.82 16 18 Si 0.95 36.57 29.54 68.60 2.03 38.59 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.29 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 22 C 0.08 2.69 5.48 86.38 0.47 3.17 16 23 C 0.44 14.73 3.29 71.98 0.24 14.97 16 24 F -0.19 -6.91 16.13 44.97 0.73 -6.19 16 25 F -0.18 -5.38 17.32 44.97 0.78 -4.60 16 26 F -0.19 -6.98 16.59 44.97 0.75 -6.23 16 27 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.06 2.14 8.01 -2.39 -0.02 2.12 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.21 8.20 5.37 -2.91 -0.02 8.19 16 36 H 0.03 1.28 7.16 -2.39 -0.02 1.26 16 37 H 0.03 1.43 5.86 -2.39 -0.01 1.41 16 38 H 0.27 12.67 8.31 -92.70 -0.77 11.90 16 39 H 0.14 4.24 8.08 -2.39 -0.02 4.22 16 40 H 0.13 4.12 7.33 -2.38 -0.02 4.10 16 Total: -1.00 -61.95 357.22 6.43 -55.52 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 1.09 Total: 19.35 kcal Atomic # 6 Polarization: 35.57 SS G_CDS: 6.46 Total: 42.03 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -3.73 Total: -96.92 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.66 Total: -41.55 kcal Atomic # 9 Polarization: -19.27 SS G_CDS: 2.25 Total: -17.02 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.59 kcal Total: -61.95 6.43 -55.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889291621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.779 kcal (2) G-P(sol) polarization free energy of solvation -61.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds