Wall clock time and date at job start Tue Mar 31 2020 18:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81398 * 109.47071 * 2 1 4 4 C 1.76198 * 102.99921 * 180.02562 * 3 2 1 5 5 C 1.38996 * 120.08192 * 0.29013 * 4 3 2 6 6 C 1.38061 * 119.92052 * 180.25507 * 5 4 3 7 7 C 1.38326 * 120.07860 * 359.74877 * 6 5 4 8 8 C 1.38283 * 120.16022 * 359.97438 * 7 6 5 9 9 C 1.38096 * 120.08054 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.03885 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47210 * 264.99495 * 10 9 8 12 12 O 1.21284 * 119.99581 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00093 * 179.97438 * 11 10 9 14 14 C 1.47423 * 125.64675 * 0.02957 * 13 11 10 15 15 C 1.54913 * 104.83089 * 155.83077 * 14 13 11 16 16 C 1.55160 * 101.57624 * 37.01185 * 15 14 13 17 17 O 1.42897 * 110.72162 * 83.04075 * 16 15 14 18 18 C 1.50702 * 110.71656 * 206.13323 * 16 15 14 19 19 H 1.08002 * 120.00299 * 118.55159 * 18 16 15 20 20 C 1.37884 * 119.99942 * 298.26718 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.47020 * 125.64834 * 179.97438 * 13 11 10 27 27 H 1.09000 * 109.47100 * 60.00008 * 1 2 3 28 28 H 1.09004 * 109.47477 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47563 * 299.99885 * 1 2 3 30 30 H 1.08995 * 109.46774 * 239.99731 * 2 1 3 31 31 H 1.09000 * 109.47100 * 119.99992 * 2 1 3 32 32 H 1.08001 * 120.04065 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.96031 * 179.77356 * 6 5 4 34 34 H 1.07998 * 119.91998 * 179.97438 * 7 6 5 35 35 H 1.07996 * 119.95526 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47300 * 144.99944 * 10 9 8 37 37 H 1.09000 * 109.47155 * 25.00000 * 10 9 8 38 38 H 1.09003 * 110.36676 * 36.99782 * 14 13 11 39 39 H 1.08990 * 110.36997 * 274.67168 * 14 13 11 40 40 H 1.08989 * 111.00550 * 278.93903 * 15 14 13 41 41 H 1.08995 * 111.00094 * 155.08083 * 15 14 13 42 42 H 0.96698 * 114.00670 * 63.83578 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.88085 * 61.67684 * 26 13 11 45 45 H 1.09002 * 109.87937 * 300.51640 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8854 1.5117 -0.0008 5 6 4.4421 0.2381 -0.0073 6 6 5.8143 0.0863 -0.0025 7 6 6.6350 1.1998 0.0034 8 6 6.0847 2.4684 0.0041 9 6 4.7130 2.6279 -0.0016 10 6 4.1143 4.0109 -0.0015 11 6 3.7946 4.4197 1.4134 12 8 4.0303 3.6627 2.3312 13 7 3.2478 5.6269 1.6589 14 6 2.9115 6.6405 0.6425 15 6 1.8022 7.5030 1.2945 16 6 2.2727 7.5503 2.7723 17 8 3.2552 8.5712 2.9577 18 6 1.1028 7.7647 3.6977 19 1 0.8571 7.0190 4.4394 20 6 0.3495 8.9155 3.6014 21 7 0.6486 9.8235 2.6983 22 14 -1.0960 9.1847 4.7536 23 1 -0.6153 9.1872 6.1587 24 1 -1.7371 10.4887 4.4470 25 1 -2.0851 8.0923 4.5707 26 6 2.8870 6.1506 2.9844 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8020 -0.6318 -0.0115 33 1 6.2476 -0.9030 -0.0039 34 1 7.7081 1.0781 0.0076 35 1 6.7285 3.3355 0.0084 36 1 3.2000 4.0111 -0.5950 37 1 4.8266 4.7152 -0.4311 38 1 2.5369 6.1610 -0.2619 39 1 3.7837 7.2531 0.4146 40 1 0.8297 7.0182 1.2095 41 1 1.7782 8.5023 0.8600 42 1 2.9273 9.4666 2.7971 43 1 0.1184 10.6330 2.6303 44 1 3.7779 6.2273 3.6078 45 1 2.1571 5.4930 3.4566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911526818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:00 Heat of formation + Delta-G solvation = -65.285430 kcal Electronic energy + Delta-G solvation = -26659.832134 eV Core-core repulsion = 22961.007531 eV Total energy + Delta-G solvation = -3698.824603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.84612 -38.79024 -37.12822 -34.26739 -33.36891 -32.65555 -32.19788 -31.09065 -29.80554 -28.52168 -27.36493 -24.93921 -23.98479 -22.89466 -22.41094 -21.38255 -19.70369 -18.69470 -17.43001 -17.24348 -16.54751 -16.28365 -15.82944 -15.16180 -15.06072 -15.02372 -14.86255 -14.57776 -14.20414 -14.14850 -13.58903 -13.28849 -12.92157 -12.82831 -12.54591 -12.43826 -12.19396 -12.02080 -11.80101 -11.69847 -11.45330 -11.42604 -11.34050 -11.32618 -11.04057 -10.86748 -10.59358 -10.50362 -10.11297 -10.08237 -9.74367 -9.44454 -9.30435 -8.81763 -8.65434 -8.21048 -7.93924 -7.38173 -6.27665 -4.35130 1.18543 1.28928 1.46154 2.38071 3.15377 3.23053 3.27414 3.31045 3.46904 3.82116 4.28164 4.64519 4.64672 4.68710 4.73069 4.92131 4.98102 5.09303 5.11677 5.20412 5.34959 5.42396 5.45699 5.52386 5.53971 5.60454 5.75564 5.78841 5.84230 5.91657 5.97065 6.05059 6.16875 6.27941 6.37955 6.46428 6.49220 6.74841 6.84818 6.95033 7.01773 7.33406 7.37674 7.74335 8.03499 8.17883 8.66527 8.72436 9.31665 9.40591 10.79642 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.003166 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.686226 B = 8841.608928 C =10055.014422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 S -0.103 6.103 4 C -0.068 4.068 5 C -0.136 4.136 6 C -0.105 4.105 7 C -0.126 4.126 8 C -0.090 4.090 9 C -0.041 4.041 10 C -0.103 4.103 11 C 0.528 3.472 12 O -0.542 6.542 13 N -0.609 5.609 14 C 0.094 3.906 15 C -0.133 4.133 16 C 0.247 3.753 17 O -0.586 6.586 18 C -0.535 4.535 19 H 0.063 0.937 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.902 3.098 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.125 3.875 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.382 0.618 43 H 0.268 0.732 44 H 0.059 0.941 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 -15.797 -10.959 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.265 4.265 3 S 0.141 5.859 4 C -0.181 4.181 5 C -0.160 4.160 6 C -0.124 4.124 7 C -0.146 4.146 8 C -0.109 4.109 9 C -0.047 4.047 10 C -0.143 4.143 11 C 0.316 3.684 12 O -0.420 6.420 13 N -0.342 5.342 14 C -0.029 4.029 15 C -0.172 4.172 16 C 0.207 3.793 17 O -0.395 6.395 18 C -0.573 4.573 19 H 0.082 0.918 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.730 3.270 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.201 1.201 26 C 0.003 3.997 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.233 0.767 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.631 -15.647 -10.403 19.352 hybrid contribution -0.353 -0.402 0.404 0.671 sum 4.278 -16.049 -9.998 19.387 Atomic orbital electron populations 1.21509 0.91772 1.02752 1.03573 1.23631 1.00623 0.97016 1.05259 1.85775 0.97593 1.10645 1.91839 1.21567 0.96759 0.95868 1.03872 1.21053 0.95876 0.95183 1.03852 1.20972 0.93000 0.98704 0.99762 1.21084 0.99731 0.92381 1.01453 1.20957 0.93620 0.97705 0.98649 1.18954 0.92981 0.92571 1.00183 1.20670 1.02879 0.94380 0.96394 1.19813 0.77808 0.80461 0.90333 1.90679 1.53752 1.51387 1.46227 1.48605 1.60546 1.15018 1.10024 1.22521 0.99247 0.90158 0.90990 1.23279 0.95815 0.99302 0.98793 1.19445 0.85612 0.83176 0.91077 1.86120 1.40790 1.19496 1.93093 1.21499 1.12257 1.05032 1.18545 0.91834 1.24982 0.97425 0.95470 0.95117 1.69686 1.40717 1.09399 1.33775 0.86481 0.81940 0.77419 0.81183 1.20000 1.21124 1.20053 1.22029 0.99250 0.95314 0.83064 0.91531 0.90916 0.91299 0.89696 0.89514 0.86139 0.86004 0.85889 0.85617 0.87920 0.87963 0.92199 0.91972 0.91451 0.89410 0.76729 0.92180 0.92301 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.92 37.16 0.37 -0.80 16 2 C -0.12 -1.14 5.05 37.16 0.19 -0.96 16 3 S -0.10 -1.41 20.22 -107.50 -2.17 -3.58 16 4 C -0.07 -0.96 6.11 -39.04 -0.24 -1.20 16 5 C -0.14 -1.65 9.36 -39.37 -0.37 -2.01 16 6 C -0.10 -1.14 10.04 -39.61 -0.40 -1.54 16 7 C -0.13 -1.41 10.04 -39.53 -0.40 -1.81 16 8 C -0.09 -1.16 9.67 -39.62 -0.38 -1.54 16 9 C -0.04 -0.60 4.39 -104.41 -0.46 -1.05 16 10 C -0.10 -1.53 4.30 -29.03 -0.12 -1.65 16 11 C 0.53 10.18 7.82 -10.98 -0.09 10.09 16 12 O -0.54 -12.22 16.36 5.55 0.09 -12.13 16 13 N -0.61 -12.26 3.33 -170.52 -0.57 -12.83 16 14 C 0.09 1.70 6.68 -2.53 -0.02 1.68 16 15 C -0.13 -2.87 5.48 -24.58 -0.13 -3.00 16 16 C 0.25 5.97 0.85 -89.94 -0.08 5.90 16 17 O -0.59 -14.68 13.09 -35.23 -0.46 -15.15 16 18 C -0.54 -14.05 8.21 -34.44 -0.28 -14.33 16 19 H 0.06 1.68 7.57 -52.49 -0.40 1.28 16 20 C 0.07 1.86 5.27 -17.82 -0.09 1.77 16 21 N -0.90 -22.86 10.66 55.43 0.59 -22.27 16 22 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.13 2.88 6.22 -3.07 -0.02 2.86 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.70 7.73 -51.93 -0.40 0.30 16 31 H 0.09 0.83 7.76 -51.92 -0.40 0.43 16 32 H 0.12 1.20 5.88 -52.49 -0.31 0.89 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.10 1.44 6.73 -51.93 -0.35 1.09 16 37 H 0.10 1.27 8.05 -51.93 -0.42 0.85 16 38 H 0.06 0.91 7.48 -51.93 -0.39 0.53 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.50 8.04 -51.94 -0.42 1.08 16 41 H 0.09 1.95 7.55 -51.93 -0.39 1.56 16 42 H 0.38 9.55 7.41 45.56 0.34 9.89 16 43 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 44 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 45 H 0.07 1.69 7.66 -51.93 -0.40 1.29 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -30.04 378.92 -10.40 -40.44 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -6.05 Total: 12.15 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.52 Total: -7.61 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.02 Total: -35.09 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.37 Total: -27.28 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.17 Total: -3.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.04 -10.40 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.841 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds