Wall clock time and date at job start Tue Mar 31 2020 18:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81398 * 109.47071 * 2 1 4 4 C 1.76198 * 102.99921 * 180.02562 * 3 2 1 5 5 C 1.38996 * 120.08192 * 0.29013 * 4 3 2 6 6 C 1.38061 * 119.92052 * 180.25507 * 5 4 3 7 7 C 1.38326 * 120.07860 * 359.74877 * 6 5 4 8 8 C 1.38283 * 120.16022 * 359.97438 * 7 6 5 9 9 C 1.38096 * 120.08054 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.03885 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47210 * 264.99495 * 10 9 8 12 12 O 1.21284 * 119.99581 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00093 * 179.97438 * 11 10 9 14 14 C 1.47423 * 125.64675 * 0.02957 * 13 11 10 15 15 C 1.54913 * 104.83089 * 155.83077 * 14 13 11 16 16 C 1.55160 * 101.57624 * 37.01185 * 15 14 13 17 17 O 1.42897 * 110.72162 * 83.04075 * 16 15 14 18 18 C 1.50702 * 110.71656 * 206.13323 * 16 15 14 19 19 H 1.08002 * 120.00299 * 118.55159 * 18 16 15 20 20 C 1.37884 * 119.99942 * 298.26718 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.47020 * 125.64834 * 179.97438 * 13 11 10 27 27 H 1.09000 * 109.47100 * 60.00008 * 1 2 3 28 28 H 1.09004 * 109.47477 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47563 * 299.99885 * 1 2 3 30 30 H 1.08995 * 109.46774 * 239.99731 * 2 1 3 31 31 H 1.09000 * 109.47100 * 119.99992 * 2 1 3 32 32 H 1.08001 * 120.04065 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.96031 * 179.77356 * 6 5 4 34 34 H 1.07998 * 119.91998 * 179.97438 * 7 6 5 35 35 H 1.07996 * 119.95526 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47300 * 144.99944 * 10 9 8 37 37 H 1.09000 * 109.47155 * 25.00000 * 10 9 8 38 38 H 1.09003 * 110.36676 * 36.99782 * 14 13 11 39 39 H 1.08990 * 110.36997 * 274.67168 * 14 13 11 40 40 H 1.08989 * 111.00550 * 278.93903 * 15 14 13 41 41 H 1.08995 * 111.00094 * 155.08083 * 15 14 13 42 42 H 0.96698 * 114.00670 * 63.83578 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.88085 * 61.67684 * 26 13 11 45 45 H 1.09002 * 109.87937 * 300.51640 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8854 1.5117 -0.0008 5 6 4.4421 0.2381 -0.0073 6 6 5.8143 0.0863 -0.0025 7 6 6.6350 1.1998 0.0034 8 6 6.0847 2.4684 0.0041 9 6 4.7130 2.6279 -0.0016 10 6 4.1143 4.0109 -0.0015 11 6 3.7946 4.4197 1.4134 12 8 4.0303 3.6627 2.3312 13 7 3.2478 5.6269 1.6589 14 6 2.9115 6.6405 0.6425 15 6 1.8022 7.5030 1.2945 16 6 2.2727 7.5503 2.7723 17 8 3.2552 8.5712 2.9577 18 6 1.1028 7.7647 3.6977 19 1 0.8571 7.0190 4.4394 20 6 0.3495 8.9155 3.6014 21 7 0.6486 9.8235 2.6983 22 14 -1.0960 9.1847 4.7536 23 1 -0.6153 9.1872 6.1587 24 1 -1.7371 10.4887 4.4470 25 1 -2.0851 8.0923 4.5707 26 6 2.8870 6.1506 2.9844 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8020 -0.6318 -0.0115 33 1 6.2476 -0.9030 -0.0039 34 1 7.7081 1.0781 0.0076 35 1 6.7285 3.3355 0.0084 36 1 3.2000 4.0111 -0.5950 37 1 4.8266 4.7152 -0.4311 38 1 2.5369 6.1610 -0.2619 39 1 3.7837 7.2531 0.4146 40 1 0.8297 7.0182 1.2095 41 1 1.7782 8.5023 0.8600 42 1 2.9273 9.4666 2.7971 43 1 0.1184 10.6330 2.6303 44 1 3.7779 6.2273 3.6078 45 1 2.1571 5.4930 3.4566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911526818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:59 Heat of formation + Delta-G solvation = -82.748281 kcal Electronic energy + Delta-G solvation = -26660.589380 eV Core-core repulsion = 22961.007531 eV Total energy + Delta-G solvation = -3699.581849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.23985 -40.00177 -38.79392 -36.07822 -34.26690 -34.20140 -33.58036 -31.97355 -31.49162 -30.17693 -28.71047 -26.72057 -24.80482 -23.98777 -23.77685 -22.47016 -21.48224 -20.22166 -19.16778 -18.37951 -18.09821 -17.26015 -17.15006 -16.91657 -16.38143 -16.18493 -16.03003 -15.80413 -15.73186 -15.16403 -14.99438 -14.81735 -14.15442 -14.04357 -13.86551 -13.69804 -13.32696 -13.29615 -13.23952 -13.15495 -13.08457 -12.85101 -12.67027 -12.43960 -12.43098 -12.30685 -12.27782 -11.97884 -11.89333 -11.26360 -11.02744 -10.95097 -10.65567 -10.62154 -10.14666 -9.78436 -9.60134 -8.38159 -8.24619 -6.39188 0.25349 0.36923 0.56051 1.42550 1.43919 1.48781 1.51234 1.65340 2.05827 2.39832 2.76676 3.00424 3.58896 3.69562 3.82248 3.92142 3.93391 3.96455 4.00576 4.10091 4.27257 4.31194 4.38812 4.42825 4.44337 4.53142 4.58075 4.61516 4.66998 4.79071 4.83478 4.84012 4.92659 5.04572 5.17295 5.18076 5.26180 5.30572 5.47794 5.48215 5.53619 5.55301 5.76252 5.98819 6.07771 6.59571 6.66394 7.17422 7.31016 7.40628 8.80966 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.003166 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.686226 B = 8841.608928 C =10055.014422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 S -0.165 6.165 4 C -0.082 4.082 5 C -0.145 4.145 6 C -0.103 4.103 7 C -0.128 4.128 8 C -0.103 4.103 9 C -0.070 4.070 10 C -0.091 4.091 11 C 0.527 3.473 12 O -0.580 6.580 13 N -0.613 5.613 14 C 0.102 3.898 15 C -0.124 4.124 16 C 0.237 3.763 17 O -0.592 6.592 18 C -0.566 4.566 19 H 0.049 0.951 20 C 0.039 3.961 21 N -0.903 5.903 22 Si 0.957 3.043 23 H -0.278 1.278 24 H -0.275 1.275 25 H -0.274 1.274 26 C 0.132 3.868 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.380 0.620 43 H 0.272 0.728 44 H 0.040 0.960 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.467 -17.267 -12.520 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.249 4.249 3 S 0.078 5.922 4 C -0.195 4.195 5 C -0.168 4.168 6 C -0.122 4.122 7 C -0.148 4.148 8 C -0.122 4.122 9 C -0.076 4.076 10 C -0.130 4.130 11 C 0.317 3.683 12 O -0.460 6.460 13 N -0.346 5.346 14 C -0.019 4.019 15 C -0.162 4.162 16 C 0.197 3.803 17 O -0.401 6.401 18 C -0.604 4.604 19 H 0.067 0.933 20 C -0.162 4.162 21 N -0.542 5.542 22 Si 0.783 3.217 23 H -0.203 1.203 24 H -0.200 1.200 25 H -0.200 1.200 26 C 0.009 3.991 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.156 0.844 36 H 0.128 0.872 37 H 0.146 0.854 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.230 0.770 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.135 -17.112 -11.995 21.519 hybrid contribution -0.478 -0.023 0.925 1.041 sum 4.657 -17.134 -11.070 20.924 Atomic orbital electron populations 1.21541 0.90891 1.04167 1.02846 1.23695 1.01114 0.93840 1.06243 1.85878 0.98909 1.15188 1.92183 1.21715 0.96342 0.96767 1.04689 1.21393 0.96933 0.95057 1.03436 1.21412 0.92524 1.00232 0.98068 1.21484 1.01369 0.91787 1.00192 1.21246 0.93213 0.99158 0.98623 1.19107 0.93935 0.92409 1.02147 1.20629 1.03968 0.95521 0.92903 1.20655 0.76384 0.79299 0.91959 1.90647 1.55144 1.52280 1.47970 1.48682 1.60931 1.15897 1.09070 1.22550 0.98580 0.89571 0.91228 1.23053 0.96381 0.99555 0.97240 1.19548 0.85093 0.83155 0.92502 1.86103 1.41137 1.19557 1.93330 1.21702 1.13804 1.05540 1.19399 0.93320 1.25563 0.99278 0.95092 0.96305 1.69736 1.41105 1.09379 1.33988 0.85628 0.79295 0.77583 0.79201 1.20350 1.20031 1.19957 1.21719 0.97829 0.94818 0.84700 0.91481 0.88248 0.92838 0.87736 0.89312 0.84292 0.82809 0.83064 0.84442 0.87154 0.85393 0.88590 0.90589 0.92693 0.90062 0.76969 0.91815 0.94115 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.92 71.98 0.71 -1.41 16 2 C -0.10 -1.83 5.05 71.98 0.36 -1.47 16 3 S -0.17 -4.50 20.22 -56.49 -1.14 -5.65 16 4 C -0.08 -2.28 6.11 22.62 0.14 -2.14 16 5 C -0.14 -3.23 9.36 22.41 0.21 -3.02 16 6 C -0.10 -1.95 10.04 22.25 0.22 -1.73 16 7 C -0.13 -2.53 10.04 22.30 0.22 -2.31 16 8 C -0.10 -2.49 9.67 22.25 0.22 -2.27 16 9 C -0.07 -1.98 4.39 -19.73 -0.09 -2.07 16 10 C -0.09 -2.59 4.30 29.10 0.13 -2.47 16 11 C 0.53 20.35 7.82 87.66 0.69 21.04 16 12 O -0.58 -26.75 16.36 -3.04 -0.05 -26.80 16 13 N -0.61 -24.81 3.33 -811.80 -2.70 -27.51 16 14 C 0.10 3.60 6.68 86.86 0.58 4.18 16 15 C -0.12 -5.34 5.48 31.99 0.18 -5.16 16 16 C 0.24 11.74 0.85 -10.35 -0.01 11.73 16 17 O -0.59 -30.24 13.09 -148.98 -1.95 -32.19 16 18 C -0.57 -30.58 8.21 25.60 0.21 -30.37 16 19 H 0.05 2.69 7.57 -2.91 -0.02 2.67 16 20 C 0.04 2.03 5.27 84.66 0.45 2.48 16 21 N -0.90 -46.02 10.66 21.45 0.23 -45.79 16 22 Si 0.96 41.72 29.54 68.60 2.03 43.74 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 24 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.13 6.33 6.22 86.73 0.54 6.87 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.48 7.73 -2.39 -0.02 1.46 16 31 H 0.09 1.57 7.76 -2.39 -0.02 1.55 16 32 H 0.14 2.43 5.88 -2.91 -0.02 2.41 16 33 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 35 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.11 2.99 6.73 -2.39 -0.02 2.97 16 37 H 0.13 2.92 8.05 -2.39 -0.02 2.90 16 38 H 0.10 2.71 7.48 -2.39 -0.02 2.69 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.05 2.47 8.04 -2.39 -0.02 2.46 16 41 H 0.08 3.60 7.55 -2.39 -0.02 3.58 16 42 H 0.38 19.32 7.41 -74.06 -0.55 18.77 16 43 H 0.27 13.20 8.31 -92.70 -0.77 12.43 16 44 H 0.04 2.04 8.07 -2.39 -0.02 2.03 16 45 H 0.05 2.70 7.66 -2.39 -0.02 2.68 16 Total: -1.00 -66.58 378.92 1.62 -64.96 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.45 Total: 37.35 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 4.75 Total: -8.12 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -2.47 Total: -73.30 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -2.00 Total: -58.99 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: -4.50 SS G_CDS: -1.14 Total: -5.65 kcal Total: -66.58 1.62 -64.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.788 kcal (2) G-P(sol) polarization free energy of solvation -66.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds