Wall clock time and date at job start Tue Mar 31 2020 18:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47174 * 2 1 4 4 O 1.45203 * 109.47079 * 240.00317 * 2 1 3 5 5 C 1.34237 * 116.99884 * 90.00200 * 4 2 1 6 6 O 1.20820 * 119.99635 * 359.97438 * 5 4 2 7 7 C 1.50693 * 119.99668 * 179.97438 * 5 4 2 8 8 C 1.53002 * 117.50168 * 248.74548 * 7 5 4 9 9 C 1.53003 * 117.49693 * 180.08446 * 7 5 4 10 10 C 1.50696 * 109.47212 * 119.99988 * 2 1 3 11 11 O 1.21293 * 119.99568 * 106.78766 * 10 2 1 12 12 N 1.34777 * 120.00509 * 286.79119 * 10 2 1 13 13 C 1.46502 * 119.99380 * 354.74075 * 12 10 2 14 14 C 1.50706 * 109.47036 * 95.96564 * 13 12 10 15 15 H 1.07998 * 119.99902 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99806 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00265 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99772 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47305 * 60.00061 * 18 16 14 20 20 H 1.48494 * 109.47045 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46981 * 299.99936 * 18 16 14 22 22 C 1.40025 * 120.00081 * 175.01500 * 12 10 2 23 23 C 1.38855 * 120.04299 * 186.47633 * 22 12 10 24 24 C 1.38114 * 119.95462 * 179.77353 * 23 22 12 25 25 C 1.38473 * 120.04140 * 0.50032 * 24 23 22 26 26 F 1.35105 * 119.95385 * 179.72635 * 25 24 23 27 27 C 1.38471 * 120.09235 * 359.74916 * 25 24 23 28 28 C 1.38106 * 120.04709 * 0.02562 * 27 25 24 29 29 H 1.09000 * 109.47268 * 187.06779 * 1 2 3 30 30 H 1.08998 * 109.47615 * 307.06992 * 1 2 3 31 31 H 1.08997 * 109.47146 * 67.06764 * 1 2 3 32 32 H 1.09004 * 115.55057 * 34.42001 * 7 5 4 33 33 H 1.09005 * 117.49346 * 0.02562 * 8 7 5 34 34 H 1.08994 * 117.50114 * 145.01995 * 8 7 5 35 35 H 1.09000 * 117.49608 * 214.98047 * 9 7 5 36 36 H 1.08995 * 117.49496 * 359.97438 * 9 7 5 37 37 H 1.09000 * 109.46991 * 215.96434 * 13 12 10 38 38 H 1.08999 * 109.47545 * 335.96672 * 13 12 10 39 39 H 0.96994 * 120.00254 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.02227 * 0.02562 * 23 22 12 41 41 H 1.07994 * 119.97703 * 180.23357 * 24 23 22 42 42 H 1.08000 * 119.97692 * 179.97438 * 27 25 24 43 43 H 1.08002 * 120.02753 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0642 -2.2812 6 8 1.9973 1.2518 -2.2505 7 6 2.7193 -0.5768 -3.5492 8 6 4.1384 -0.2285 -4.0029 9 6 2.9327 0.3303 -4.7627 10 6 2.0323 -0.7104 1.2304 11 8 2.5205 -1.8166 1.1351 12 7 1.9391 -0.1166 2.4368 13 6 1.4566 1.2629 2.5387 14 6 -0.0178 1.2576 2.8508 15 1 -0.5427 0.3205 2.9625 16 6 -0.6962 2.4493 2.9948 17 7 -0.0568 3.5905 2.8593 18 14 -2.5235 2.4427 3.3824 19 1 -2.7538 1.7409 4.6706 20 1 -3.0126 3.8410 3.4856 21 1 -3.2569 1.7411 2.2984 22 6 2.3088 -0.8163 3.5919 23 6 2.0880 -0.2575 4.8437 24 6 2.4491 -0.9512 5.9821 25 6 3.0405 -2.1987 5.8753 26 9 3.3981 -2.8734 6.9899 27 6 3.2663 -2.7555 4.6277 28 6 2.9024 -2.0671 3.4871 29 1 -0.3634 -1.0198 0.1264 30 1 -0.3634 0.6194 0.8199 31 1 -0.3633 0.4004 -0.9464 32 1 2.3662 -1.5912 -3.7349 33 1 4.7089 0.4640 -3.3839 34 1 4.7188 -1.0136 -4.4874 35 1 2.7204 -0.0876 -5.7468 36 1 2.7094 1.3905 -4.6440 37 1 1.9946 1.7781 3.3345 38 1 1.6259 1.7779 1.5931 39 1 -0.5342 4.4288 2.9602 40 1 1.6305 0.7172 4.9273 41 1 2.2741 -0.5185 6.9560 42 1 3.7280 -3.7285 4.5466 43 1 3.0791 -2.5015 2.5142 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916630247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:20 Heat of formation + Delta-G solvation = -104.367909 kcal Electronic energy + Delta-G solvation = -29133.475356 eV Core-core repulsion = 24866.742834 eV Total energy + Delta-G solvation = -4266.732522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.79286 -42.33192 -41.48990 -39.39637 -38.20665 -37.13071 -36.93508 -34.68257 -33.23137 -32.07545 -30.39263 -29.27321 -26.93348 -25.47375 -25.33599 -23.90090 -23.38963 -23.05489 -21.44217 -20.80740 -19.31952 -18.80206 -18.62573 -18.34191 -18.25002 -17.53490 -17.21085 -16.62696 -16.57716 -16.44711 -16.13273 -15.67647 -15.53239 -15.30939 -14.67928 -14.54944 -14.51964 -14.17042 -14.08188 -13.83414 -13.70711 -13.44848 -13.41852 -13.09575 -12.90470 -12.70592 -12.58621 -12.48661 -12.23269 -12.06452 -11.96948 -11.89116 -11.76433 -11.59682 -11.48351 -10.90763 -10.66665 -10.36067 -10.04853 -8.85449 -8.25681 -6.39811 0.07069 0.31179 0.94556 1.11574 1.32712 1.43488 1.46744 1.52493 2.07300 2.38019 2.72720 2.79149 3.04495 3.13960 3.37263 3.49653 3.68187 3.74943 3.84853 3.89957 3.91076 3.97313 4.14916 4.29297 4.34729 4.45890 4.59565 4.67084 4.70712 4.82510 4.86467 4.98052 4.98832 5.05697 5.17516 5.19881 5.24186 5.26114 5.31861 5.34735 5.59525 5.63601 5.88077 6.08744 6.21448 6.57032 6.67464 6.89518 7.29171 8.79103 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008466 B = 0.004445 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.534349 B = 6297.632402 C = 9052.548065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.085 3.915 3 H 0.100 0.900 4 O -0.336 6.336 5 C 0.481 3.519 6 O -0.536 6.536 7 C -0.185 4.185 8 C -0.138 4.138 9 C -0.136 4.136 10 C 0.521 3.479 11 O -0.531 6.531 12 N -0.529 5.529 13 C 0.236 3.764 14 C -0.539 4.539 15 H 0.063 0.937 16 C 0.034 3.966 17 N -0.911 5.911 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.268 1.268 22 C 0.137 3.863 23 C -0.121 4.121 24 C -0.127 4.127 25 C 0.056 3.944 26 F -0.146 7.146 27 C -0.128 4.128 28 C -0.159 4.159 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.159 0.841 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.270 0.730 40 H 0.139 0.861 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -8.307 -7.818 12.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.028 3.972 3 H 0.118 0.882 4 O -0.252 6.252 5 C 0.326 3.674 6 O -0.425 6.425 7 C -0.204 4.204 8 C -0.175 4.175 9 C -0.173 4.173 10 C 0.311 3.689 11 O -0.411 6.411 12 N -0.249 5.249 13 C 0.116 3.884 14 C -0.577 4.577 15 H 0.081 0.919 16 C -0.168 4.168 17 N -0.549 5.549 18 Si 0.775 3.225 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.193 1.193 22 C 0.042 3.958 23 C -0.141 4.141 24 C -0.146 4.146 25 C 0.037 3.963 26 F -0.124 7.124 27 C -0.147 4.147 28 C -0.179 4.179 29 H 0.087 0.913 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.107 0.893 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.110 0.890 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.157 0.843 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.721 -8.276 -7.853 12.763 hybrid contribution -1.125 0.674 0.835 1.555 sum 4.596 -7.602 -7.019 11.321 Atomic orbital electron populations 1.22399 0.90228 1.04374 1.05734 1.22336 0.97387 0.96254 0.81257 0.88243 1.86550 1.76732 1.42146 1.19784 1.23646 0.73249 0.85209 0.85247 1.90668 1.49321 1.17968 1.84567 1.21914 1.05224 1.03461 0.89788 1.23222 0.88580 1.03920 1.01756 1.23241 1.00019 0.99120 0.94902 1.20340 0.78269 0.85687 0.84636 1.90262 1.44966 1.20448 1.85441 1.45791 1.59065 1.16098 1.03948 1.19564 0.95173 0.74974 0.98643 1.21321 0.93405 0.92923 1.50081 0.91858 1.25525 1.02172 0.94808 0.94306 1.69982 1.38218 0.98143 1.48571 0.85720 0.80340 0.77214 0.79243 1.19559 1.21018 1.19340 1.18322 0.97930 0.93072 0.86473 1.20956 1.01487 1.01671 0.89978 1.21082 0.99998 0.93599 0.99946 1.17775 1.03403 0.92554 0.82616 1.91451 1.90183 1.79824 1.50978 1.21274 1.01812 1.01718 0.89943 1.22609 0.99206 0.93738 1.02313 0.91330 0.86967 0.91062 0.82303 0.89291 0.83907 0.83948 0.89014 0.94386 0.94467 0.92037 0.84340 0.82605 0.82564 0.80369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.36 9.40 71.98 0.68 -5.68 16 2 C 0.09 3.32 2.19 29.85 0.07 3.39 16 3 H 0.10 4.15 5.52 -2.38 -0.01 4.13 16 4 O -0.34 -12.00 9.45 -45.23 -0.43 -12.43 16 5 C 0.48 15.37 7.71 71.23 0.55 15.92 16 6 O -0.54 -20.24 15.48 21.98 0.34 -19.90 16 7 C -0.19 -3.86 6.30 -11.54 -0.07 -3.93 16 8 C -0.14 -2.19 10.24 30.62 0.31 -1.88 16 9 C -0.14 -2.19 10.05 30.62 0.31 -1.88 16 10 C 0.52 21.37 6.93 87.66 0.61 21.98 16 11 O -0.53 -22.30 12.96 15.37 0.20 -22.10 16 12 N -0.53 -22.02 2.69 -635.23 -1.71 -23.73 16 13 C 0.24 10.65 4.10 85.63 0.35 11.00 16 14 C -0.54 -25.48 5.98 25.60 0.15 -25.32 16 15 H 0.06 3.03 7.78 -2.91 -0.02 3.01 16 16 C 0.03 1.67 5.46 84.66 0.46 2.13 16 17 N -0.91 -47.27 13.29 21.45 0.28 -46.99 16 18 Si 0.95 39.27 29.54 68.60 2.03 41.30 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 C 0.14 5.37 6.47 38.13 0.25 5.61 16 23 C -0.12 -4.41 9.02 22.39 0.20 -4.21 16 24 C -0.13 -3.98 10.02 22.30 0.22 -3.75 16 25 C 0.06 1.74 7.30 22.38 0.16 1.90 16 26 F -0.15 -4.27 17.27 44.97 0.78 -3.50 16 27 C -0.13 -3.93 10.02 22.29 0.22 -3.71 16 28 C -0.16 -5.72 9.05 22.39 0.20 -5.52 16 29 H 0.07 2.40 8.13 -2.39 -0.02 2.38 16 30 H 0.11 4.69 4.58 -2.39 -0.01 4.68 16 31 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.16 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.86 7.67 -2.39 -0.02 1.84 16 37 H 0.04 1.80 6.85 -2.39 -0.02 1.78 16 38 H 0.04 1.78 5.91 -2.39 -0.01 1.76 16 39 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 40 H 0.14 5.43 6.14 -2.91 -0.02 5.41 16 41 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 42 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 43 H 0.18 6.77 4.53 -62.12 -0.28 6.49 16 Total: -1.00 -58.41 364.48 6.96 -51.45 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.79 Total: 29.84 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 4.67 Total: 6.05 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -1.43 Total: -70.72 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: 0.11 Total: -54.43 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -58.41 6.96 -51.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916630247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.915 kcal (2) G-P(sol) polarization free energy of solvation -58.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds