Wall clock time and date at job start Tue Mar 31 2020 18:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47007 * 2 1 4 4 C 1.46506 * 119.99600 * 269.99849 * 3 2 1 5 5 C 1.50701 * 109.47367 * 270.00005 * 4 3 2 6 6 H 1.08002 * 119.99291 * 0.02562 * 5 4 3 7 7 C 1.37864 * 119.99950 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00353 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47250 * 89.99940 * 9 7 5 11 11 H 1.48501 * 109.47157 * 210.00069 * 9 7 5 12 12 H 1.48496 * 109.46861 * 329.99840 * 9 7 5 13 13 C 1.34774 * 120.00179 * 90.00351 * 3 2 1 14 14 O 1.21275 * 119.99887 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00048 * 359.97438 * 13 3 2 16 16 O 1.42900 * 109.47021 * 180.02562 * 15 13 3 17 17 C 1.34908 * 116.99763 * 179.97438 * 16 15 13 18 18 O 1.21623 * 119.99914 * 0.02562 * 17 16 15 19 19 C 1.46228 * 120.00106 * 179.97438 * 17 16 15 20 20 C 1.34918 * 120.00199 * 173.30350 * 19 17 16 21 21 C 1.47170 * 119.99938 * 348.75047 * 20 19 17 22 22 C 1.39879 * 120.15837 * 311.98177 * 21 20 19 23 23 C 1.37871 * 119.87484 * 179.97438 * 22 21 20 24 24 C 1.38391 * 120.20047 * 359.97115 * 23 22 21 25 25 C 1.38596 * 120.32539 * 359.79801 * 24 23 22 26 26 F 1.35103 * 119.94294 * 180.23312 * 25 24 23 27 27 C 1.38135 * 120.11741 * 0.45831 * 25 24 23 28 28 H 1.09005 * 109.47155 * 300.00487 * 1 2 3 29 29 H 1.09000 * 109.47114 * 60.00112 * 1 2 3 30 30 H 1.08998 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46730 * 240.00126 * 2 1 3 32 32 H 1.09000 * 109.47114 * 119.99887 * 2 1 3 33 33 H 1.08992 * 109.47198 * 30.00441 * 4 3 2 34 34 H 1.08999 * 109.46506 * 150.00322 * 4 3 2 35 35 H 0.96995 * 120.00700 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47206 * 60.00080 * 15 13 3 37 37 H 1.09005 * 109.47137 * 300.00451 * 15 13 3 38 38 H 1.08005 * 120.00222 * 353.30952 * 19 17 16 39 39 H 1.08000 * 119.99914 * 168.74837 * 20 19 17 40 40 H 1.07994 * 120.06330 * 359.97438 * 22 21 20 41 41 H 1.08002 * 119.90083 * 179.97438 * 23 22 21 42 42 H 1.08010 * 119.83792 * 180.02562 * 24 23 22 43 43 H 1.08004 * 120.10025 * 179.79299 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7039 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 5.3915 2.1842 -3.2570 9 14 3.0134 3.4370 -3.9282 10 1 3.1171 4.8569 -3.5060 11 1 3.4064 3.3148 -5.3550 12 1 1.6136 2.9712 -3.7587 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9914 1.3064 2.4723 16 8 2.3006 2.1821 3.5584 17 6 2.1277 1.6963 4.8051 18 8 1.7258 0.5595 4.9644 19 6 2.4247 2.5361 5.9647 20 6 2.1256 2.1017 7.2065 21 6 1.2842 0.9077 7.3857 22 6 0.0879 0.7775 6.6725 23 6 -0.6956 -0.3438 6.8444 24 6 -0.3017 -1.3408 7.7197 25 6 0.8844 -1.2227 8.4269 26 9 1.2638 -2.2028 9.2758 27 6 1.6770 -0.1024 8.2689 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 5.7176 2.5746 -4.0829 36 1 2.6213 0.4187 2.5302 37 1 0.9433 1.0125 2.5299 38 1 2.8835 3.5041 5.8272 39 1 2.5036 2.6303 8.0692 40 1 -0.2215 1.5540 5.9886 41 1 -1.6196 -0.4445 6.2944 42 1 -0.9198 -2.2170 7.8495 43 1 2.5995 -0.0091 8.8226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918868128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:36 Heat of formation + Delta-G solvation = -105.209798 kcal Electronic energy + Delta-G solvation = -27988.375598 eV Core-core repulsion = 23721.606569 eV Total energy + Delta-G solvation = -4266.769029 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.11625 -40.84760 -39.45918 -38.82130 -36.62371 -35.43871 -34.27407 -32.78142 -31.07315 -30.51692 -30.19296 -29.21540 -27.14429 -24.85227 -23.07507 -22.99790 -22.69387 -21.95349 -19.97229 -18.69146 -18.35715 -17.35141 -17.03387 -16.81282 -16.56926 -16.50454 -16.23896 -15.95130 -15.79109 -15.25619 -14.66091 -14.48165 -14.21748 -14.05159 -13.65649 -13.57827 -13.46964 -13.19729 -12.88438 -12.65979 -12.44586 -12.40961 -12.22619 -12.04756 -11.86459 -11.48926 -11.44371 -11.04735 -10.90207 -10.66915 -10.56710 -10.53211 -10.29288 -10.19409 -9.58197 -9.16131 -9.12941 -8.61816 -8.59082 -7.84562 -6.11369 -4.10882 0.21559 0.97606 1.26448 2.47284 2.73665 3.14875 3.27184 3.32988 3.34362 3.34956 3.76213 3.92436 4.27276 4.36824 4.46780 4.65417 4.70818 4.77845 4.81221 4.99114 5.06478 5.07851 5.14489 5.21761 5.29565 5.41773 5.47278 5.52348 5.63183 5.73413 5.77468 5.83986 5.90828 6.00451 6.07826 6.13908 6.30691 6.33023 6.59817 6.63687 6.87429 7.22472 7.56126 7.65902 8.09117 8.42302 8.79788 8.92115 9.48061 11.01934 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.002316 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.305901 B =12085.541064 C =12570.083877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.321 6.321 17 C 0.485 3.515 18 O -0.497 6.497 19 C -0.170 4.170 20 C -0.021 4.021 21 C -0.042 4.042 22 C -0.067 4.067 23 C -0.095 4.095 24 C -0.144 4.144 25 C 0.089 3.911 26 F -0.143 7.143 27 C -0.134 4.134 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.121 0.879 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.163 -4.947 22.672 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.394 6.394 15 C -0.027 4.027 16 O -0.236 6.236 17 C 0.330 3.670 18 O -0.387 6.387 19 C -0.189 4.189 20 C -0.040 4.040 21 C -0.042 4.042 22 C -0.086 4.086 23 C -0.113 4.113 24 C -0.163 4.163 25 C 0.070 3.930 26 F -0.121 7.121 27 C -0.153 4.153 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.139 0.861 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.910 -4.664 22.529 26.381 hybrid contribution -0.279 0.069 -0.687 0.744 sum -13.189 -4.595 21.842 25.926 Atomic orbital electron populations 1.22241 0.96503 1.01852 1.02279 1.21538 0.93633 0.83576 1.03495 1.47873 1.64204 1.13539 1.06486 1.19701 0.97532 0.93427 0.79543 1.21311 0.95265 1.33111 1.07273 0.90704 1.24852 0.95015 0.95767 0.97332 1.69892 1.15108 1.44881 1.23556 0.86848 0.81406 0.81638 0.79783 1.19847 1.21029 1.19055 1.19737 0.79395 0.87099 0.84330 1.90714 1.44301 1.17603 1.86743 1.22519 1.02574 0.92971 0.84597 1.86255 1.78572 1.44550 1.14198 1.21508 0.74962 0.86560 0.83924 1.90959 1.41861 1.19468 1.86399 1.22414 1.05971 1.01079 0.89447 1.22495 0.91716 0.92914 0.96847 1.18733 0.94969 0.94273 0.96266 1.21176 0.93310 0.97980 0.96103 1.20834 1.00009 0.93028 0.97445 1.21205 0.96037 1.00815 0.98212 1.17487 0.95477 0.87040 0.92977 1.91497 1.91278 1.60751 1.68602 1.21121 1.00447 0.93309 1.00381 0.93071 0.91981 0.91702 0.89198 0.91385 0.94888 0.94422 0.92499 0.88764 0.88988 0.82891 0.83051 0.86060 0.84996 0.84921 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.10 1.53 5.93 -4.04 -0.02 1.51 16 3 N -0.59 -11.83 2.46 -175.06 -0.43 -12.26 16 4 C 0.22 5.23 4.23 -5.19 -0.02 5.21 16 5 C -0.53 -15.10 9.94 -34.44 -0.34 -15.44 16 6 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 13 C 0.51 10.42 7.75 -10.99 -0.09 10.34 16 14 O -0.52 -12.92 16.08 -14.35 -0.23 -13.15 16 15 C 0.05 0.80 4.41 36.01 0.16 0.96 16 16 O -0.32 -5.08 9.66 -47.82 -0.46 -5.54 16 17 C 0.48 6.29 7.08 33.94 0.24 6.53 16 18 O -0.50 -6.92 12.25 -19.36 -0.24 -7.16 16 19 C -0.17 -1.57 10.05 -37.55 -0.38 -1.94 16 20 C -0.02 -0.16 9.78 -37.14 -0.36 -0.52 16 21 C -0.04 -0.39 4.34 -105.07 -0.46 -0.85 16 22 C -0.07 -0.65 6.78 -39.10 -0.27 -0.91 16 23 C -0.10 -0.83 10.03 -39.66 -0.40 -1.23 16 24 C -0.14 -1.30 10.02 -39.39 -0.39 -1.69 16 25 C 0.09 0.90 7.29 -39.49 -0.29 0.61 16 26 F -0.14 -1.53 17.26 2.25 0.04 -1.49 16 27 C -0.13 -1.24 9.77 -39.03 -0.38 -1.63 16 28 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 33 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 34 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 35 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.09 1.38 7.39 -51.93 -0.38 0.99 16 37 H 0.09 1.21 7.17 -51.93 -0.37 0.83 16 38 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.12 1.11 7.45 -52.49 -0.39 0.72 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -35.84 373.65 -7.85 -43.69 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.55 Total: -0.91 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.71 Total: 1.26 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.34 Total: -38.97 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.93 Total: -25.85 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.84 -7.85 -43.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918868128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.522 kcal (2) G-P(sol) polarization free energy of solvation -35.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds