Wall clock time and date at job start Tue Mar 31 2020 18:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47007 * 2 1 4 4 C 1.46506 * 119.99600 * 269.99849 * 3 2 1 5 5 C 1.50701 * 109.47367 * 270.00005 * 4 3 2 6 6 H 1.08002 * 119.99291 * 0.02562 * 5 4 3 7 7 C 1.37864 * 119.99950 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00353 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47250 * 89.99940 * 9 7 5 11 11 H 1.48501 * 109.47157 * 210.00069 * 9 7 5 12 12 H 1.48496 * 109.46861 * 329.99840 * 9 7 5 13 13 C 1.34774 * 120.00179 * 90.00351 * 3 2 1 14 14 O 1.21275 * 119.99887 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00048 * 359.97438 * 13 3 2 16 16 O 1.42900 * 109.47021 * 180.02562 * 15 13 3 17 17 C 1.34908 * 116.99763 * 179.97438 * 16 15 13 18 18 O 1.21623 * 119.99914 * 0.02562 * 17 16 15 19 19 C 1.46228 * 120.00106 * 179.97438 * 17 16 15 20 20 C 1.34918 * 120.00199 * 173.30350 * 19 17 16 21 21 C 1.47170 * 119.99938 * 348.75047 * 20 19 17 22 22 C 1.39879 * 120.15837 * 311.98177 * 21 20 19 23 23 C 1.37871 * 119.87484 * 179.97438 * 22 21 20 24 24 C 1.38391 * 120.20047 * 359.97115 * 23 22 21 25 25 C 1.38596 * 120.32539 * 359.79801 * 24 23 22 26 26 F 1.35103 * 119.94294 * 180.23312 * 25 24 23 27 27 C 1.38135 * 120.11741 * 0.45831 * 25 24 23 28 28 H 1.09005 * 109.47155 * 300.00487 * 1 2 3 29 29 H 1.09000 * 109.47114 * 60.00112 * 1 2 3 30 30 H 1.08998 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46730 * 240.00126 * 2 1 3 32 32 H 1.09000 * 109.47114 * 119.99887 * 2 1 3 33 33 H 1.08992 * 109.47198 * 30.00441 * 4 3 2 34 34 H 1.08999 * 109.46506 * 150.00322 * 4 3 2 35 35 H 0.96995 * 120.00700 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47206 * 60.00080 * 15 13 3 37 37 H 1.09005 * 109.47137 * 300.00451 * 15 13 3 38 38 H 1.08005 * 120.00222 * 353.30952 * 19 17 16 39 39 H 1.08000 * 119.99914 * 168.74837 * 20 19 17 40 40 H 1.07994 * 120.06330 * 359.97438 * 22 21 20 41 41 H 1.08002 * 119.90083 * 179.97438 * 23 22 21 42 42 H 1.08010 * 119.83792 * 180.02562 * 24 23 22 43 43 H 1.08004 * 120.10025 * 179.79299 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7039 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 5.3915 2.1842 -3.2570 9 14 3.0134 3.4370 -3.9282 10 1 3.1171 4.8569 -3.5060 11 1 3.4064 3.3148 -5.3550 12 1 1.6136 2.9712 -3.7587 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9914 1.3064 2.4723 16 8 2.3006 2.1821 3.5584 17 6 2.1277 1.6963 4.8051 18 8 1.7258 0.5595 4.9644 19 6 2.4247 2.5361 5.9647 20 6 2.1256 2.1017 7.2065 21 6 1.2842 0.9077 7.3857 22 6 0.0879 0.7775 6.6725 23 6 -0.6956 -0.3438 6.8444 24 6 -0.3017 -1.3408 7.7197 25 6 0.8844 -1.2227 8.4269 26 9 1.2638 -2.2028 9.2758 27 6 1.6770 -0.1024 8.2689 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 5.7176 2.5746 -4.0829 36 1 2.6213 0.4187 2.5302 37 1 0.9433 1.0125 2.5299 38 1 2.8835 3.5041 5.8272 39 1 2.5036 2.6303 8.0692 40 1 -0.2215 1.5540 5.9886 41 1 -1.6196 -0.4445 6.2944 42 1 -0.9198 -2.2170 7.8495 43 1 2.5995 -0.0091 8.8226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918868128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:35 Heat of formation + Delta-G solvation = -126.058475 kcal Electronic energy + Delta-G solvation = -27989.279665 eV Core-core repulsion = 23721.606569 eV Total energy + Delta-G solvation = -4267.673096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.88135 -41.89888 -40.73935 -39.80284 -37.71183 -37.02197 -34.98899 -34.88545 -32.09307 -31.74266 -31.08480 -30.43466 -28.77524 -25.76625 -24.49179 -24.08410 -23.67330 -23.07111 -20.86019 -20.17124 -19.26496 -19.13545 -18.31816 -17.89248 -17.82457 -17.40886 -17.16042 -17.11138 -16.60198 -16.51010 -16.27389 -15.68369 -15.28574 -14.89742 -14.80361 -14.77462 -14.51391 -14.24709 -14.15343 -14.04289 -13.75842 -13.55003 -13.40339 -13.23953 -13.13179 -12.72841 -12.57454 -12.42617 -12.13966 -12.11718 -12.01828 -11.75400 -11.70932 -11.55034 -10.96948 -10.83985 -10.78609 -9.83860 -9.53670 -9.31113 -8.34550 -6.40475 -0.48839 0.28181 0.54818 1.31341 1.37109 1.37809 1.46072 1.57840 1.88237 2.30811 2.41177 2.66211 2.99670 3.24077 3.40242 3.61476 3.74532 3.86660 3.96945 3.97384 4.08783 4.11576 4.13918 4.35683 4.40800 4.46118 4.57409 4.74886 4.79434 4.84473 4.88824 4.94862 4.98291 5.07465 5.11772 5.17263 5.29519 5.34259 5.35334 5.44083 5.50552 5.56109 5.92583 6.20677 6.50430 6.61108 6.69278 7.15099 7.28228 8.82422 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.002316 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.305901 B =12085.541064 C =12570.083877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.093 3.907 3 N -0.593 5.593 4 C 0.226 3.774 5 C -0.539 4.539 6 H 0.028 0.972 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.235 1.235 13 C 0.501 3.499 14 O -0.575 6.575 15 C 0.065 3.935 16 O -0.345 6.345 17 C 0.482 3.518 18 O -0.511 6.511 19 C -0.192 4.192 20 C 0.009 3.991 21 C -0.058 4.058 22 C -0.079 4.079 23 C -0.100 4.100 24 C -0.148 4.148 25 C 0.068 3.932 26 F -0.151 7.151 27 C -0.138 4.138 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.021 0.979 35 H 0.269 0.731 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.170 0.830 39 H 0.194 0.806 40 H 0.122 0.878 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.570 -5.206 23.720 28.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.029 4.029 3 N -0.325 5.325 4 C 0.104 3.896 5 C -0.577 4.577 6 H 0.046 0.954 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.200 1.200 12 H -0.158 1.158 13 C 0.288 3.712 14 O -0.454 6.454 15 C -0.013 4.013 16 O -0.261 6.261 17 C 0.330 3.670 18 O -0.402 6.402 19 C -0.211 4.211 20 C -0.009 4.009 21 C -0.058 4.058 22 C -0.097 4.097 23 C -0.118 4.118 24 C -0.166 4.166 25 C 0.049 3.951 26 F -0.129 7.129 27 C -0.157 4.157 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.187 0.813 39 H 0.210 0.790 40 H 0.140 0.860 41 H 0.170 0.830 42 H 0.166 0.834 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.352 -4.984 23.603 28.594 hybrid contribution 0.513 0.038 -0.883 1.021 sum -14.839 -4.946 22.720 27.584 Atomic orbital electron populations 1.22170 0.93539 1.03901 1.02314 1.21878 0.95994 0.80775 1.04251 1.47974 1.63879 1.15304 1.05338 1.19378 0.95043 0.93186 0.81968 1.21544 0.97045 1.32289 1.06850 0.95373 1.25865 0.96755 0.97160 0.98947 1.70049 1.17458 1.46508 1.24496 0.85707 0.80518 0.78983 0.77708 1.20143 1.20032 1.15827 1.20594 0.78013 0.86664 0.85922 1.90672 1.46843 1.20177 1.87744 1.22337 1.04476 0.92097 0.82365 1.86262 1.79331 1.45277 1.15261 1.22170 0.74321 0.86967 0.83545 1.90945 1.42841 1.20138 1.86273 1.22506 1.08273 1.01858 0.88457 1.22910 0.89135 0.91437 0.97394 1.19012 0.95413 0.95104 0.96322 1.21366 0.93795 0.98367 0.96182 1.21111 1.00687 0.92603 0.97361 1.21457 0.95901 1.01456 0.97821 1.17769 0.96344 0.87405 0.93582 1.91474 1.91425 1.61110 1.68936 1.21332 1.00952 0.93018 1.00349 0.92165 0.92834 0.88586 0.90136 0.89074 0.92615 0.96045 0.92219 0.87736 0.85965 0.81260 0.78958 0.85958 0.83016 0.83369 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 10.24 71.98 0.74 -2.68 16 2 C 0.09 2.66 5.93 86.38 0.51 3.17 16 3 N -0.59 -23.77 2.46 -826.14 -2.03 -25.80 16 4 C 0.23 10.87 4.23 85.63 0.36 11.23 16 5 C -0.54 -31.63 9.94 25.60 0.25 -31.38 16 6 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 7 C 0.01 0.64 5.47 84.65 0.46 1.10 16 8 N -0.95 -59.79 13.96 21.44 0.30 -59.49 16 9 Si 0.95 44.01 27.47 68.60 1.88 45.89 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 13 C 0.50 20.64 7.75 87.66 0.68 21.32 16 14 O -0.57 -29.58 16.08 16.02 0.26 -29.33 16 15 C 0.06 1.96 4.41 71.24 0.31 2.27 16 16 O -0.35 -10.79 9.66 -51.77 -0.50 -11.29 16 17 C 0.48 11.95 7.08 69.90 0.50 12.44 16 18 O -0.51 -13.46 12.25 19.43 0.24 -13.22 16 19 C -0.19 -3.18 10.05 23.58 0.24 -2.94 16 20 C 0.01 0.11 9.78 23.85 0.23 0.34 16 21 C -0.06 -0.96 4.34 -20.16 -0.09 -1.05 16 22 C -0.08 -1.37 6.78 22.58 0.15 -1.22 16 23 C -0.10 -1.56 10.03 22.22 0.22 -1.34 16 24 C -0.15 -2.44 10.02 22.39 0.22 -2.21 16 25 C 0.07 1.29 7.29 22.33 0.16 1.45 16 26 F -0.15 -3.10 17.26 44.97 0.78 -2.33 16 27 C -0.14 -2.32 9.77 22.62 0.22 -2.10 16 28 H 0.06 1.18 7.22 -2.38 -0.02 1.16 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 32 H 0.09 2.17 6.44 -2.39 -0.02 2.16 16 33 H 0.06 2.43 7.13 -2.39 -0.02 2.41 16 34 H 0.02 1.11 6.85 -2.39 -0.02 1.09 16 35 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 36 H 0.10 2.93 7.39 -2.39 -0.02 2.91 16 37 H 0.12 2.92 7.17 -2.38 -0.02 2.90 16 38 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 39 H 0.19 0.66 8.06 -2.91 -0.02 0.63 16 40 H 0.12 2.05 7.45 -2.91 -0.02 2.03 16 41 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -82.25 373.65 7.08 -75.17 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.97 Total: 11.98 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 5.18 Total: 8.41 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -1.73 Total: -85.29 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: 0.00 Total: -53.84 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -82.25 7.08 -75.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918868128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.887 kcal (2) G-P(sol) polarization free energy of solvation -82.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds