Wall clock time and date at job start Tue Mar 31 2020 18:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47239 * 2 1 4 4 C 1.46507 * 119.99655 * 269.99644 * 3 2 1 5 5 C 1.50693 * 109.47237 * 269.99641 * 4 3 2 6 6 H 1.08000 * 120.00229 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00041 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99717 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00039 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47134 * 89.99855 * 9 7 5 11 11 H 1.48500 * 109.46988 * 209.99931 * 9 7 5 12 12 H 1.48504 * 109.47016 * 329.99679 * 9 7 5 13 13 C 1.34771 * 120.00558 * 89.99489 * 3 2 1 14 14 O 1.21274 * 120.00435 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99912 * 0.02562 * 13 3 2 16 16 O 1.42895 * 109.47534 * 180.02562 * 15 13 3 17 17 C 1.34915 * 117.00338 * 180.02562 * 16 15 13 18 18 O 1.21633 * 120.00077 * 359.97438 * 17 16 15 19 19 C 1.46138 * 120.00095 * 179.97438 * 17 16 15 20 20 C 1.35015 * 120.00056 * 186.54182 * 19 17 16 21 21 C 1.47046 * 119.99807 * 10.06028 * 20 19 17 22 22 C 1.39916 * 120.19201 * 48.56958 * 21 20 19 23 23 C 1.37802 * 119.85042 * 179.67305 * 22 21 20 24 24 C 1.38499 * 120.24104 * 0.62495 * 23 22 21 25 25 C 1.38267 * 120.38956 * 359.67240 * 24 23 22 26 26 C 1.38229 * 120.14687 * 0.02562 * 25 24 23 27 27 F 1.35102 * 120.12512 * 179.97438 * 26 25 24 28 28 H 1.08995 * 109.46943 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46871 * 300.00506 * 1 2 3 30 30 H 1.08996 * 109.46748 * 60.00487 * 1 2 3 31 31 H 1.08997 * 109.47292 * 239.99164 * 2 1 3 32 32 H 1.09005 * 109.47033 * 119.99592 * 2 1 3 33 33 H 1.09002 * 109.47050 * 30.00056 * 4 3 2 34 34 H 1.09002 * 109.46966 * 149.99772 * 4 3 2 35 35 H 0.97006 * 119.99474 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47598 * 59.99475 * 15 13 3 37 37 H 1.09007 * 109.47082 * 299.99622 * 15 13 3 38 38 H 1.07999 * 120.00307 * 6.54127 * 19 17 16 39 39 H 1.08001 * 119.99990 * 190.06468 * 20 19 17 40 40 H 1.07997 * 120.07725 * 359.97438 * 22 21 20 41 41 H 1.07991 * 119.88296 * 180.32100 * 23 22 21 42 42 H 1.07998 * 119.80436 * 179.69755 * 24 23 22 43 43 H 1.07998 * 119.92737 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8350 -1.7038 6 1 4.3428 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8774 8 7 5.3915 2.1832 -3.2572 9 14 3.0136 3.4369 -3.9281 10 1 3.1174 4.8568 -3.5060 11 1 3.4068 3.3147 -5.3549 12 1 1.6138 2.9711 -3.7588 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9922 1.3062 2.4723 16 8 2.3010 2.1819 3.5584 17 6 2.1299 1.6955 4.8051 18 8 1.7288 0.5584 4.9646 19 6 2.4265 2.5350 5.9640 20 6 2.3829 2.0096 7.2070 21 6 2.2571 0.5556 7.3866 22 6 3.0905 -0.3158 6.6768 23 6 2.9710 -1.6770 6.8556 24 6 2.0206 -2.1855 7.7253 25 6 1.1877 -1.3337 8.4271 26 6 1.2978 0.0346 8.2647 27 9 0.4834 0.8664 8.9503 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.5818 1.6875 -2.0285 34 1 2.0956 3.1410 -1.1386 35 1 5.7176 2.5737 -4.0832 36 1 2.6227 0.4188 2.5300 37 1 0.9443 1.0117 2.5302 38 1 2.6806 3.5755 5.8263 39 1 2.4404 2.6573 8.0693 40 1 3.8290 0.0775 5.9941 41 1 3.6175 -2.3498 6.3120 42 1 1.9298 -3.2537 7.8563 43 1 0.4495 -1.7384 9.1036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918957270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:39 Heat of formation + Delta-G solvation = -104.279387 kcal Electronic energy + Delta-G solvation = -28173.474559 eV Core-core repulsion = 23906.745875 eV Total energy + Delta-G solvation = -4266.728684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.15898 -40.81358 -39.39924 -38.79717 -36.64701 -35.43318 -34.32132 -32.77931 -30.87027 -30.52919 -30.26314 -29.19700 -27.12708 -24.83931 -23.07218 -23.00455 -22.57783 -21.95763 -19.91486 -18.66167 -18.37580 -17.67242 -17.05734 -16.75185 -16.67531 -16.47464 -16.22924 -15.84348 -15.61758 -15.05688 -14.71628 -14.44341 -14.24842 -14.01846 -13.62303 -13.56547 -13.44175 -13.26180 -12.90234 -12.58657 -12.51662 -12.37005 -12.21452 -11.98752 -11.85208 -11.48615 -11.41947 -11.03780 -10.90006 -10.72664 -10.55785 -10.53082 -10.25487 -10.18832 -9.58111 -9.12633 -8.97545 -8.65423 -8.61660 -7.83947 -6.11526 -4.10844 0.24510 0.98848 1.30484 2.49316 2.75831 3.15867 3.27561 3.33388 3.35519 3.36804 3.77503 3.94300 4.22185 4.37091 4.47568 4.60659 4.72924 4.81245 4.95419 4.98442 5.09141 5.13164 5.15695 5.21843 5.29476 5.48348 5.48776 5.56921 5.64441 5.71910 5.81207 5.88104 5.91946 6.05114 6.08563 6.17362 6.32016 6.34258 6.61263 6.64287 6.88177 7.23113 7.56360 7.67666 8.09787 8.42362 8.80516 8.91926 9.48128 11.01760 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021159 B = 0.002396 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.025342 B =11681.835427 C =11945.672505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.321 6.321 17 C 0.486 3.514 18 O -0.499 6.499 19 C -0.172 4.172 20 C -0.017 4.017 21 C -0.105 4.105 22 C -0.027 4.027 23 C -0.135 4.135 24 C -0.080 4.080 25 C -0.164 4.164 26 C 0.115 3.885 27 F -0.138 7.138 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.048 -8.059 22.867 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.294 3.706 14 O -0.393 6.393 15 C -0.027 4.027 16 O -0.235 6.235 17 C 0.332 3.668 18 O -0.389 6.389 19 C -0.191 4.191 20 C -0.036 4.036 21 C -0.106 4.106 22 C -0.045 4.045 23 C -0.153 4.153 24 C -0.098 4.098 25 C -0.182 4.182 26 C 0.096 3.904 27 F -0.117 7.117 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.171 0.829 39 H 0.167 0.833 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.847 -7.699 22.718 25.567 hybrid contribution -0.689 0.488 -0.701 1.098 sum -9.536 -7.211 22.017 25.054 Atomic orbital electron populations 1.22243 0.96510 1.01863 1.02317 1.21532 0.93633 0.83571 1.03448 1.47869 1.64220 1.13546 1.06481 1.19703 0.97526 0.93444 0.79548 1.21309 0.95257 1.33102 1.07267 0.90700 1.24852 0.95015 0.95761 0.97328 1.69898 1.15123 1.44880 1.23556 0.86850 0.81422 0.81650 0.79771 1.19842 1.21027 1.19045 1.19737 0.79390 0.87105 0.84329 1.90714 1.44291 1.17590 1.86739 1.22518 1.02644 0.92899 0.84608 1.86259 1.78382 1.44718 1.14184 1.21479 0.75387 0.86012 0.83892 1.90946 1.42461 1.19092 1.86384 1.22373 1.06022 1.01353 0.89373 1.22389 0.91214 0.93059 0.96915 1.18927 0.98688 0.93671 0.99330 1.21033 0.96499 0.92898 0.94038 1.21066 0.99604 0.95121 0.99479 1.21081 0.93983 0.99769 0.94925 1.20984 1.02571 0.91244 1.03439 1.17734 0.91127 0.87901 0.93681 1.91487 1.70869 1.71680 1.77638 0.91700 0.93049 0.91977 0.89202 0.91405 0.94888 0.94421 0.92506 0.88783 0.88982 0.82897 0.83253 0.85717 0.85236 0.85123 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.10 1.55 5.93 -4.04 -0.02 1.52 16 3 N -0.59 -11.91 2.46 -175.06 -0.43 -12.34 16 4 C 0.22 5.25 4.23 -5.19 -0.02 5.23 16 5 C -0.53 -15.09 9.94 -34.44 -0.34 -15.43 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 9 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 13 C 0.51 10.52 7.75 -10.99 -0.09 10.44 16 14 O -0.52 -13.03 16.08 -14.35 -0.23 -13.26 16 15 C 0.05 0.81 4.41 36.01 0.16 0.97 16 16 O -0.32 -5.21 9.65 -47.84 -0.46 -5.68 16 17 C 0.49 6.61 7.10 33.90 0.24 6.85 16 18 O -0.50 -7.17 12.14 -19.37 -0.24 -7.40 16 19 C -0.17 -1.77 10.07 -37.56 -0.38 -2.15 16 20 C -0.02 -0.16 9.45 -37.16 -0.35 -0.51 16 21 C -0.11 -1.11 4.36 -105.00 -0.46 -1.57 16 22 C -0.03 -0.28 6.73 -39.11 -0.26 -0.54 16 23 C -0.13 -1.21 10.03 -39.64 -0.40 -1.61 16 24 C -0.08 -0.64 10.04 -39.47 -0.40 -1.04 16 25 C -0.16 -1.45 10.01 -39.57 -0.40 -1.85 16 26 C 0.11 1.20 7.30 -38.89 -0.28 0.92 16 27 F -0.14 -1.49 16.84 2.25 0.04 -1.45 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 33 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 34 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.09 1.35 7.39 -51.93 -0.38 0.96 16 37 H 0.09 1.27 7.17 -51.92 -0.37 0.90 16 38 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.27 7.44 -52.49 -0.39 0.88 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -35.64 373.04 -7.86 -43.50 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.55 Total: -0.53 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -2.71 Total: 1.51 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.34 Total: -39.01 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.93 Total: -26.34 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.64 -7.86 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918957270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.782 kcal (2) G-P(sol) polarization free energy of solvation -35.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds