Wall clock time and date at job start Tue Mar 31 2020 18:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47239 * 2 1 4 4 C 1.46507 * 119.99655 * 269.99644 * 3 2 1 5 5 C 1.50693 * 109.47237 * 269.99641 * 4 3 2 6 6 H 1.08000 * 120.00229 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00041 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99717 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00039 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47134 * 89.99855 * 9 7 5 11 11 H 1.48500 * 109.46988 * 209.99931 * 9 7 5 12 12 H 1.48504 * 109.47016 * 329.99679 * 9 7 5 13 13 C 1.34771 * 120.00558 * 89.99489 * 3 2 1 14 14 O 1.21274 * 120.00435 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99912 * 0.02562 * 13 3 2 16 16 O 1.42895 * 109.47534 * 180.02562 * 15 13 3 17 17 C 1.34915 * 117.00338 * 180.02562 * 16 15 13 18 18 O 1.21633 * 120.00077 * 359.97438 * 17 16 15 19 19 C 1.46138 * 120.00095 * 179.97438 * 17 16 15 20 20 C 1.35015 * 120.00056 * 186.54182 * 19 17 16 21 21 C 1.47046 * 119.99807 * 10.06028 * 20 19 17 22 22 C 1.39916 * 120.19201 * 48.56958 * 21 20 19 23 23 C 1.37802 * 119.85042 * 179.67305 * 22 21 20 24 24 C 1.38499 * 120.24104 * 0.62495 * 23 22 21 25 25 C 1.38267 * 120.38956 * 359.67240 * 24 23 22 26 26 C 1.38229 * 120.14687 * 0.02562 * 25 24 23 27 27 F 1.35102 * 120.12512 * 179.97438 * 26 25 24 28 28 H 1.08995 * 109.46943 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46871 * 300.00506 * 1 2 3 30 30 H 1.08996 * 109.46748 * 60.00487 * 1 2 3 31 31 H 1.08997 * 109.47292 * 239.99164 * 2 1 3 32 32 H 1.09005 * 109.47033 * 119.99592 * 2 1 3 33 33 H 1.09002 * 109.47050 * 30.00056 * 4 3 2 34 34 H 1.09002 * 109.46966 * 149.99772 * 4 3 2 35 35 H 0.97006 * 119.99474 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47598 * 59.99475 * 15 13 3 37 37 H 1.09007 * 109.47082 * 299.99622 * 15 13 3 38 38 H 1.07999 * 120.00307 * 6.54127 * 19 17 16 39 39 H 1.08001 * 119.99990 * 190.06468 * 20 19 17 40 40 H 1.07997 * 120.07725 * 359.97438 * 22 21 20 41 41 H 1.07991 * 119.88296 * 180.32100 * 23 22 21 42 42 H 1.07998 * 119.80436 * 179.69755 * 24 23 22 43 43 H 1.07998 * 119.92737 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8350 -1.7038 6 1 4.3428 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8774 8 7 5.3915 2.1832 -3.2572 9 14 3.0136 3.4369 -3.9281 10 1 3.1174 4.8568 -3.5060 11 1 3.4068 3.3147 -5.3549 12 1 1.6138 2.9711 -3.7588 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9922 1.3062 2.4723 16 8 2.3010 2.1819 3.5584 17 6 2.1299 1.6955 4.8051 18 8 1.7288 0.5584 4.9646 19 6 2.4265 2.5350 5.9640 20 6 2.3829 2.0096 7.2070 21 6 2.2571 0.5556 7.3866 22 6 3.0905 -0.3158 6.6768 23 6 2.9710 -1.6770 6.8556 24 6 2.0206 -2.1855 7.7253 25 6 1.1877 -1.3337 8.4271 26 6 1.2978 0.0346 8.2647 27 9 0.4834 0.8664 8.9503 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.5818 1.6875 -2.0285 34 1 2.0956 3.1410 -1.1386 35 1 5.7176 2.5737 -4.0832 36 1 2.6227 0.4188 2.5300 37 1 0.9443 1.0117 2.5302 38 1 2.6806 3.5755 5.8263 39 1 2.4404 2.6573 8.0693 40 1 3.8290 0.0775 5.9941 41 1 3.6175 -2.3498 6.3120 42 1 1.9298 -3.2537 7.8563 43 1 0.4495 -1.7384 9.1036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918957270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:38 Heat of formation + Delta-G solvation = -124.840476 kcal Electronic energy + Delta-G solvation = -28174.366154 eV Core-core repulsion = 23906.745875 eV Total energy + Delta-G solvation = -4267.620279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.93079 -41.92258 -40.73633 -39.75811 -37.76700 -37.03662 -35.10866 -34.88852 -32.09627 -31.56118 -31.18413 -30.46845 -28.77652 -25.79032 -24.50547 -24.14303 -23.59475 -23.06481 -20.87074 -20.16957 -19.28957 -19.13808 -18.54125 -18.06842 -17.75556 -17.62900 -17.20760 -16.99436 -16.63388 -16.34208 -16.08433 -15.65992 -15.27177 -14.98927 -14.84697 -14.78416 -14.53095 -14.29357 -14.17837 -14.01295 -13.75750 -13.64315 -13.42315 -13.19399 -13.18089 -12.67701 -12.58045 -12.43702 -12.14800 -12.09609 -12.02234 -11.75984 -11.73503 -11.63345 -11.02773 -10.84139 -10.79721 -9.69987 -9.54366 -9.39503 -8.34802 -6.40390 -0.53009 0.26635 0.56128 1.29900 1.35481 1.37418 1.45546 1.56300 1.83493 2.30546 2.38848 2.67245 2.99490 3.22945 3.38869 3.50594 3.70922 3.81700 3.92311 3.95911 4.07524 4.12973 4.29965 4.34992 4.35398 4.46070 4.56750 4.74129 4.79358 4.83563 4.87810 4.93880 4.97384 5.02842 5.09865 5.18499 5.26528 5.34325 5.39143 5.43843 5.50009 5.55570 5.93828 6.20592 6.49126 6.61052 6.65705 7.14568 7.27835 8.82073 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021159 B = 0.002396 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.025342 B =11681.835427 C =11945.672505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.592 5.592 4 C 0.226 3.774 5 C -0.538 4.538 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.236 1.236 13 C 0.501 3.499 14 O -0.575 6.575 15 C 0.064 3.936 16 O -0.345 6.345 17 C 0.485 3.515 18 O -0.509 6.509 19 C -0.190 4.190 20 C 0.002 3.998 21 C -0.125 4.125 22 C -0.044 4.044 23 C -0.141 4.141 24 C -0.076 4.076 25 C -0.167 4.167 26 C 0.097 3.903 27 F -0.144 7.144 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.269 0.731 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.170 0.830 39 H 0.181 0.819 40 H 0.118 0.882 41 H 0.145 0.855 42 H 0.161 0.839 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.378 -9.308 23.981 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.325 5.325 4 C 0.104 3.896 5 C -0.577 4.577 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.584 5.584 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.159 1.159 13 C 0.288 3.712 14 O -0.455 6.455 15 C -0.013 4.013 16 O -0.260 6.260 17 C 0.332 3.668 18 O -0.400 6.400 19 C -0.209 4.209 20 C -0.016 4.016 21 C -0.126 4.126 22 C -0.062 4.062 23 C -0.159 4.159 24 C -0.094 4.094 25 C -0.185 4.185 26 C 0.078 3.922 27 F -0.122 7.122 28 H 0.115 0.885 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.188 0.812 39 H 0.198 0.802 40 H 0.136 0.864 41 H 0.163 0.837 42 H 0.178 0.822 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.211 -9.010 23.855 27.855 hybrid contribution 0.118 0.731 -0.915 1.177 sum -11.093 -8.279 22.940 26.793 Atomic orbital electron populations 1.22176 0.93770 1.03906 1.02177 1.21880 0.95809 0.80747 1.04396 1.47971 1.63847 1.15343 1.05295 1.19383 0.95138 0.93141 0.81951 1.21535 0.96981 1.32297 1.06847 0.95186 1.25842 0.96722 0.97131 0.98924 1.70050 1.17413 1.46477 1.24489 0.85729 0.80539 0.79000 0.77787 1.20229 1.19967 1.15921 1.20580 0.78028 0.86663 0.85919 1.90673 1.46874 1.20179 1.87742 1.22358 1.04441 0.92214 0.82305 1.86262 1.79095 1.45505 1.15187 1.22019 0.74951 0.86314 0.83491 1.90930 1.43217 1.19585 1.86252 1.22466 1.08102 1.01861 0.88460 1.22762 0.88506 0.92952 0.97373 1.19147 0.99167 0.94468 0.99774 1.21125 0.96884 0.93764 0.94438 1.21367 0.99997 0.94879 0.99641 1.21445 0.92898 1.01251 0.93792 1.21317 1.02929 0.90738 1.03544 1.17966 0.91463 0.88642 0.94122 1.91470 1.71032 1.71938 1.77780 0.88509 0.92460 0.92860 0.89951 0.88888 0.92631 0.96163 0.92214 0.87171 0.86352 0.81247 0.80203 0.86401 0.83701 0.82159 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 10.24 71.98 0.74 -2.81 16 2 C 0.09 2.68 5.93 86.38 0.51 3.19 16 3 N -0.59 -23.91 2.46 -826.15 -2.03 -25.94 16 4 C 0.23 10.91 4.23 85.63 0.36 11.27 16 5 C -0.54 -31.54 9.94 25.60 0.25 -31.29 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.71 5.47 84.65 0.46 1.17 16 8 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 9 Si 0.95 44.15 27.47 68.60 1.88 46.03 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 13 C 0.50 20.90 7.75 87.66 0.68 21.58 16 14 O -0.58 -29.96 16.08 16.03 0.26 -29.70 16 15 C 0.06 1.98 4.41 71.24 0.31 2.30 16 16 O -0.34 -11.19 9.65 -51.84 -0.50 -11.69 16 17 C 0.48 12.91 7.10 69.87 0.50 13.41 16 18 O -0.51 -14.10 12.14 19.40 0.24 -13.87 16 19 C -0.19 -3.75 10.07 23.58 0.24 -3.51 16 20 C 0.00 0.03 9.45 23.84 0.23 0.26 16 21 C -0.12 -2.48 4.36 -20.11 -0.09 -2.57 16 22 C -0.04 -0.87 6.73 22.57 0.15 -0.72 16 23 C -0.14 -2.29 10.03 22.23 0.22 -2.07 16 24 C -0.08 -1.04 10.04 22.34 0.22 -0.81 16 25 C -0.17 -2.59 10.01 22.27 0.22 -2.37 16 26 C 0.10 1.89 7.30 22.72 0.17 2.06 16 27 F -0.14 -2.90 16.84 44.97 0.76 -2.14 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.20 7.22 -2.39 -0.02 1.18 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 32 H 0.09 2.19 6.44 -2.38 -0.02 2.17 16 33 H 0.06 2.44 7.13 -2.39 -0.02 2.42 16 34 H 0.02 1.05 6.85 -2.39 -0.02 1.04 16 35 H 0.27 15.75 8.31 -92.70 -0.77 14.97 16 36 H 0.11 3.02 7.39 -2.39 -0.02 3.00 16 37 H 0.12 3.01 7.17 -2.38 -0.02 2.99 16 38 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 40 H 0.12 2.41 7.44 -2.91 -0.02 2.39 16 41 H 0.15 1.80 8.06 -2.92 -0.02 1.78 16 42 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 43 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -81.29 373.04 7.06 -74.23 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.97 Total: 13.28 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 5.18 Total: 9.08 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.73 Total: -85.23 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -0.01 Total: -55.26 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.76 Total: -2.14 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Total: -81.29 7.06 -74.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918957270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.609 kcal (2) G-P(sol) polarization free energy of solvation -81.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds