Wall clock time and date at job start Tue Mar 31 2020 19:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99584 * 2 1 4 4 C 1.53001 * 109.60848 * 55.76097 * 3 2 1 5 5 N 1.46498 * 109.47282 * 58.88051 * 4 3 2 6 6 C 1.34771 * 120.00204 * 174.96251 * 5 4 3 7 7 O 1.21284 * 120.00018 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00121 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.46991 * 180.02562 * 8 6 5 10 10 C 1.37640 * 120.12566 * 264.72054 * 9 8 6 11 11 C 1.38614 * 120.24662 * 179.72384 * 10 9 8 12 12 C 1.38653 * 120.50080 * 0.55638 * 11 10 9 13 13 C 1.37596 * 120.24905 * 359.72066 * 12 11 10 14 14 C 1.40692 * 120.12903 * 84.99663 * 9 8 6 15 15 C 1.41399 * 120.24676 * 359.97438 * 14 9 8 16 16 H 1.07999 * 119.99968 * 328.29239 * 15 14 9 17 17 C 1.39952 * 119.99882 * 148.28277 * 15 14 9 18 18 N 1.30814 * 120.00198 * 348.19901 * 17 15 14 19 19 Si 1.86800 * 119.99745 * 168.19629 * 17 15 14 20 20 H 1.48504 * 109.47215 * 60.00097 * 19 17 15 21 21 H 1.48494 * 109.47305 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47165 * 300.00419 * 19 17 15 23 23 C 1.53859 * 109.61357 * 295.41780 * 3 2 1 24 24 C 1.55037 * 106.94577 * 287.67456 * 23 3 2 25 25 S 1.83461 * 102.08818 * 317.63587 * 24 23 3 26 26 C 1.54279 * 109.60703 * 176.09611 * 3 2 1 27 27 H 1.08995 * 109.46943 * 301.20835 * 1 2 3 28 28 H 1.08999 * 109.47542 * 61.20863 * 1 2 3 29 29 H 1.08997 * 109.46822 * 181.21135 * 1 2 3 30 30 H 1.09007 * 109.46544 * 298.88396 * 4 3 2 31 31 H 1.08994 * 109.47153 * 178.88583 * 4 3 2 32 32 H 0.97008 * 119.99920 * 354.96494 * 5 4 3 33 33 H 1.08995 * 109.47170 * 59.99816 * 8 6 5 34 34 H 1.09001 * 109.46476 * 299.99487 * 8 6 5 35 35 H 1.08005 * 119.87442 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.74718 * 180.25818 * 11 10 9 37 37 H 1.08004 * 119.87775 * 179.74850 * 12 11 10 38 38 H 1.08007 * 120.12526 * 180.02562 * 13 12 11 39 39 H 0.96997 * 120.00329 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.97165 * 46.87460 * 23 3 2 41 41 H 1.09000 * 109.97516 * 168.14929 * 23 3 2 42 42 H 1.09000 * 110.81045 * 199.54551 * 24 23 3 43 43 H 1.08996 * 111.19334 * 75.90500 * 24 23 3 44 44 H 1.09000 * 110.40350 * 210.58636 * 26 3 2 45 45 H 1.09005 * 110.39940 * 332.99747 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4781 2.1043 1.1915 5 7 1.8047 1.4023 2.4351 6 6 1.5232 1.9712 3.6240 7 8 0.9991 3.0642 3.6644 8 6 1.8598 1.2492 4.9034 9 6 1.4455 2.0939 6.0807 10 6 2.3610 2.9164 6.6970 11 6 1.9813 3.6986 7.7765 12 6 0.6807 3.6539 8.2550 13 6 -0.2497 2.8347 7.6581 14 6 0.1230 2.0403 6.5578 15 6 -0.8248 1.1951 5.9360 16 1 -0.7568 0.9945 4.8770 17 6 -1.8508 0.6182 6.6930 18 7 -1.8065 0.6668 7.9995 19 14 -3.2837 -0.2212 5.8377 20 1 -2.7763 -1.3430 5.0074 21 1 -4.2290 -0.7463 6.8555 22 1 -3.9853 0.7588 4.9701 23 6 1.6519 2.0303 -1.3090 24 6 2.4809 1.3630 -2.4365 25 16 4.1206 1.1600 -1.6390 26 6 3.5453 1.1888 0.0989 27 1 -0.3633 0.5325 0.8789 28 1 -0.3634 0.4949 -0.9006 29 1 -0.3633 -1.0274 0.0217 30 1 0.3963 2.2074 1.1058 31 1 1.9377 3.0926 1.2006 32 1 2.2236 0.5279 2.4029 33 1 2.9336 1.0672 4.9462 34 1 1.3284 0.2980 4.9343 35 1 3.3780 2.9555 6.3355 36 1 2.7052 4.3443 8.2513 37 1 0.3968 4.2646 9.0993 38 1 -1.2624 2.8017 8.0323 39 1 -2.5178 0.2674 8.5242 40 1 0.5877 1.9187 -1.5172 41 1 1.9076 3.0870 -1.2316 42 1 2.5503 2.0176 -3.3053 43 1 2.0618 0.3959 -2.7141 44 1 3.9591 2.0511 0.6219 45 1 3.8243 0.2655 0.6069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928499975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:03 Heat of formation + Delta-G solvation = -66.199617 kcal Electronic energy + Delta-G solvation = -26973.901428 eV Core-core repulsion = 23275.037183 eV Total energy + Delta-G solvation = -3698.864245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.16605 -38.81027 -37.26623 -34.72132 -33.73595 -33.56173 -31.73337 -30.15754 -29.45575 -28.02216 -26.66758 -26.17667 -24.96460 -23.63668 -20.93189 -20.53640 -20.47431 -19.31905 -17.37954 -17.20925 -17.02290 -16.33022 -15.99479 -15.69877 -15.38523 -15.05527 -14.72956 -14.43883 -14.29747 -13.82523 -13.57696 -13.47291 -13.30795 -13.00410 -12.63806 -12.54139 -12.48139 -12.26661 -12.13043 -11.81340 -11.70472 -11.56122 -11.17802 -11.06879 -11.02631 -10.98507 -10.66982 -10.40357 -10.38341 -9.86955 -9.47329 -9.39075 -9.21300 -9.17647 -8.80892 -7.93893 -7.31289 -7.22568 -6.68724 -4.34815 1.50374 2.02738 2.79585 2.94681 3.06180 3.08478 3.20902 3.25896 3.30069 3.62789 3.95207 4.09165 4.22421 4.31781 4.65608 4.69980 4.76557 4.97442 5.06003 5.16367 5.19266 5.28445 5.34581 5.40161 5.46725 5.55193 5.59262 5.70725 5.80449 6.02295 6.13454 6.28036 6.43662 6.50227 6.63449 6.79506 6.80995 7.12281 7.27575 7.41353 7.65002 7.85373 7.93297 8.07619 8.11766 8.32769 8.65037 8.81052 8.93504 9.01810 10.27474 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.003346 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.590092 B = 8367.037939 C = 9922.049900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.366 6.366 3 C 0.100 3.900 4 C 0.103 3.897 5 N -0.740 5.740 6 C 0.516 3.484 7 O -0.521 6.521 8 C -0.071 4.071 9 C -0.174 4.174 10 C -0.085 4.085 11 C -0.233 4.233 12 C -0.109 4.109 13 C -0.152 4.152 14 C 0.131 3.869 15 C -0.462 4.462 16 H 0.072 0.928 17 C 0.077 3.923 18 N -0.803 5.803 19 Si 0.903 3.097 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.152 4.152 24 C -0.064 4.064 25 S -0.286 6.286 26 C -0.057 4.057 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.400 0.600 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.279 0.721 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -2.209 -16.941 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.285 6.285 3 C 0.059 3.941 4 C -0.023 4.023 5 N -0.396 5.396 6 C 0.304 3.696 7 O -0.395 6.395 8 C -0.110 4.110 9 C -0.176 4.176 10 C -0.103 4.103 11 C -0.253 4.253 12 C -0.128 4.128 13 C -0.171 4.171 14 C 0.129 3.871 15 C -0.493 4.493 16 H 0.090 0.910 17 C -0.140 4.140 18 N -0.430 5.430 19 Si 0.728 3.272 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.191 4.191 24 C -0.212 4.212 25 S -0.060 6.060 26 C -0.205 4.205 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.235 0.765 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.888 -1.767 -17.156 18.224 hybrid contribution -1.904 -0.524 0.140 1.979 sum 3.985 -2.291 -17.016 17.626 Atomic orbital electron populations 1.22931 0.80482 1.03452 1.00748 1.88000 1.20289 1.25401 1.94840 1.22549 0.92516 0.84749 0.94284 1.21728 1.01078 0.96171 0.83322 1.46025 1.65866 1.22820 1.04877 1.21270 0.77354 0.86344 0.84643 1.90686 1.40880 1.20763 1.87165 1.20261 1.00814 0.99824 0.90128 1.19114 0.94360 1.04207 0.99950 1.20324 0.96839 0.96785 0.96352 1.20336 0.96441 1.06349 1.02127 1.20687 0.94052 0.99237 0.98817 1.21244 0.98805 0.97496 0.99534 1.17329 0.90031 0.89230 0.90547 1.19379 1.08787 1.25264 0.95826 0.90985 1.25826 0.98242 0.95275 0.94619 1.69778 1.31479 1.35960 1.05760 0.86452 0.80953 0.79852 0.79914 1.19152 1.20364 1.19059 1.23066 1.02058 1.01298 0.92725 1.24125 0.93032 1.04230 0.99787 1.87594 1.15751 1.97439 1.05231 1.24021 0.93829 1.07289 0.95395 0.92658 0.93771 0.89076 0.91059 0.90270 0.76547 0.90549 0.88426 0.89692 0.89582 0.89518 0.86900 0.91012 0.88899 0.88732 0.87833 0.88742 0.87216 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.24 101.05 1.04 1.22 16 2 O -0.37 -3.78 9.85 -35.23 -0.35 -4.13 16 3 C 0.10 0.95 0.46 -89.50 -0.04 0.91 16 4 C 0.10 1.23 3.91 -4.04 -0.02 1.21 16 5 N -0.74 -10.14 5.18 -60.29 -0.31 -10.45 16 6 C 0.52 9.63 7.44 -10.98 -0.08 9.54 16 7 O -0.52 -12.05 16.03 5.55 0.09 -11.96 16 8 C -0.07 -1.35 5.20 -29.03 -0.15 -1.50 16 9 C -0.17 -4.15 4.43 -103.91 -0.46 -4.61 16 10 C -0.08 -1.94 9.66 -39.66 -0.38 -2.32 16 11 C -0.23 -5.40 10.05 -39.29 -0.39 -5.79 16 12 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 13 C -0.15 -4.04 8.64 -38.87 -0.34 -4.37 16 14 C 0.13 3.48 5.50 -106.82 -0.59 2.89 16 15 C -0.46 -12.07 7.99 -37.74 -0.30 -12.38 16 16 H 0.07 1.83 6.88 -52.49 -0.36 1.47 16 17 C 0.08 1.92 5.21 -17.34 -0.09 1.83 16 18 N -0.80 -20.82 11.11 55.55 0.62 -20.21 16 19 Si 0.90 18.75 29.58 -169.99 -5.03 13.72 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 C -0.15 -1.18 5.23 -25.21 -0.13 -1.31 16 24 C -0.06 -0.49 7.28 38.23 0.28 -0.21 16 25 S -0.29 -2.90 23.26 -107.50 -2.50 -5.40 16 26 C -0.06 -0.55 5.97 37.83 0.23 -0.32 16 27 H 0.05 0.60 6.32 -51.93 -0.33 0.27 16 28 H 0.04 0.33 6.36 -51.93 -0.33 0.00 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.91 6.54 -51.93 -0.34 0.57 16 31 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 32 H 0.40 4.65 7.99 -40.82 -0.33 4.32 16 33 H 0.08 1.22 8.05 -51.93 -0.42 0.81 16 34 H 0.10 1.87 7.16 -51.93 -0.37 1.49 16 35 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.11 3.09 6.50 -52.48 -0.34 2.75 16 39 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 40 H 0.09 0.63 6.20 -51.93 -0.32 0.31 16 41 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.11 1.02 7.88 -51.93 -0.41 0.61 16 45 H 0.11 1.03 8.08 -51.93 -0.42 0.61 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -30.99 374.65 -10.15 -41.14 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.48 Total: 9.92 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -1.83 Total: -18.28 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 0.30 Total: -30.66 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.26 Total: -16.09 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -2.50 Total: -5.40 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.99 -10.15 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928499975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.060 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds