Wall clock time and date at job start Tue Mar 31 2020 19:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99584 * 2 1 4 4 C 1.53001 * 109.60848 * 55.76097 * 3 2 1 5 5 N 1.46498 * 109.47282 * 58.88051 * 4 3 2 6 6 C 1.34771 * 120.00204 * 174.96251 * 5 4 3 7 7 O 1.21284 * 120.00018 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00121 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.46991 * 180.02562 * 8 6 5 10 10 C 1.37640 * 120.12566 * 264.72054 * 9 8 6 11 11 C 1.38614 * 120.24662 * 179.72384 * 10 9 8 12 12 C 1.38653 * 120.50080 * 0.55638 * 11 10 9 13 13 C 1.37596 * 120.24905 * 359.72066 * 12 11 10 14 14 C 1.40692 * 120.12903 * 84.99663 * 9 8 6 15 15 C 1.41399 * 120.24676 * 359.97438 * 14 9 8 16 16 H 1.07999 * 119.99968 * 328.29239 * 15 14 9 17 17 C 1.39952 * 119.99882 * 148.28277 * 15 14 9 18 18 N 1.30814 * 120.00198 * 348.19901 * 17 15 14 19 19 Si 1.86800 * 119.99745 * 168.19629 * 17 15 14 20 20 H 1.48504 * 109.47215 * 60.00097 * 19 17 15 21 21 H 1.48494 * 109.47305 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47165 * 300.00419 * 19 17 15 23 23 C 1.53859 * 109.61357 * 295.41780 * 3 2 1 24 24 C 1.55037 * 106.94577 * 287.67456 * 23 3 2 25 25 S 1.83461 * 102.08818 * 317.63587 * 24 23 3 26 26 C 1.54279 * 109.60703 * 176.09611 * 3 2 1 27 27 H 1.08995 * 109.46943 * 301.20835 * 1 2 3 28 28 H 1.08999 * 109.47542 * 61.20863 * 1 2 3 29 29 H 1.08997 * 109.46822 * 181.21135 * 1 2 3 30 30 H 1.09007 * 109.46544 * 298.88396 * 4 3 2 31 31 H 1.08994 * 109.47153 * 178.88583 * 4 3 2 32 32 H 0.97008 * 119.99920 * 354.96494 * 5 4 3 33 33 H 1.08995 * 109.47170 * 59.99816 * 8 6 5 34 34 H 1.09001 * 109.46476 * 299.99487 * 8 6 5 35 35 H 1.08005 * 119.87442 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.74718 * 180.25818 * 11 10 9 37 37 H 1.08004 * 119.87775 * 179.74850 * 12 11 10 38 38 H 1.08007 * 120.12526 * 180.02562 * 13 12 11 39 39 H 0.96997 * 120.00329 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.97165 * 46.87460 * 23 3 2 41 41 H 1.09000 * 109.97516 * 168.14929 * 23 3 2 42 42 H 1.09000 * 110.81045 * 199.54551 * 24 23 3 43 43 H 1.08996 * 111.19334 * 75.90500 * 24 23 3 44 44 H 1.09000 * 110.40350 * 210.58636 * 26 3 2 45 45 H 1.09005 * 110.39940 * 332.99747 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4781 2.1043 1.1915 5 7 1.8047 1.4023 2.4351 6 6 1.5232 1.9712 3.6240 7 8 0.9991 3.0642 3.6644 8 6 1.8598 1.2492 4.9034 9 6 1.4455 2.0939 6.0807 10 6 2.3610 2.9164 6.6970 11 6 1.9813 3.6986 7.7765 12 6 0.6807 3.6539 8.2550 13 6 -0.2497 2.8347 7.6581 14 6 0.1230 2.0403 6.5578 15 6 -0.8248 1.1951 5.9360 16 1 -0.7568 0.9945 4.8770 17 6 -1.8508 0.6182 6.6930 18 7 -1.8065 0.6668 7.9995 19 14 -3.2837 -0.2212 5.8377 20 1 -2.7763 -1.3430 5.0074 21 1 -4.2290 -0.7463 6.8555 22 1 -3.9853 0.7588 4.9701 23 6 1.6519 2.0303 -1.3090 24 6 2.4809 1.3630 -2.4365 25 16 4.1206 1.1600 -1.6390 26 6 3.5453 1.1888 0.0989 27 1 -0.3633 0.5325 0.8789 28 1 -0.3634 0.4949 -0.9006 29 1 -0.3633 -1.0274 0.0217 30 1 0.3963 2.2074 1.1058 31 1 1.9377 3.0926 1.2006 32 1 2.2236 0.5279 2.4029 33 1 2.9336 1.0672 4.9462 34 1 1.3284 0.2980 4.9343 35 1 3.3780 2.9555 6.3355 36 1 2.7052 4.3443 8.2513 37 1 0.3968 4.2646 9.0993 38 1 -1.2624 2.8017 8.0323 39 1 -2.5178 0.2674 8.5242 40 1 0.5877 1.9187 -1.5172 41 1 1.9076 3.0870 -1.2316 42 1 2.5503 2.0176 -3.3053 43 1 2.0618 0.3959 -2.7141 44 1 3.9591 2.0511 0.6219 45 1 3.8243 0.2655 0.6069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928499975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:02 Heat of formation + Delta-G solvation = -84.547890 kcal Electronic energy + Delta-G solvation = -26974.697069 eV Core-core repulsion = 23275.037183 eV Total energy + Delta-G solvation = -3699.659886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22073 -40.14145 -38.98783 -35.69491 -35.44457 -34.75408 -33.42155 -31.36126 -30.97714 -29.24157 -27.88504 -27.16912 -26.69336 -24.50346 -22.81655 -22.07218 -21.39324 -20.79133 -19.05400 -18.29027 -18.04559 -17.38655 -17.27371 -16.99665 -16.52241 -16.32095 -16.10603 -15.95359 -15.33885 -15.22100 -14.91150 -14.70911 -14.34895 -14.31335 -14.06710 -13.70787 -13.54567 -13.37146 -13.18511 -12.97774 -12.94565 -12.87379 -12.77516 -12.60595 -12.47525 -12.42894 -12.12315 -11.81414 -11.31395 -11.23200 -11.12605 -11.03535 -10.84253 -10.58444 -10.06416 -9.19619 -9.12201 -8.71080 -8.55147 -6.30421 0.79064 1.00443 1.13205 1.33317 1.35869 1.46375 1.52671 1.82364 2.20076 2.21578 2.64431 2.82339 3.35193 3.40513 3.59811 3.74858 3.95451 4.13594 4.15117 4.29619 4.34424 4.36939 4.40340 4.42476 4.54018 4.55078 4.62606 4.63476 4.69749 4.71357 4.81564 4.83148 4.88090 4.96539 5.07945 5.21958 5.34736 5.45527 5.54187 5.79231 6.02325 6.03708 6.16757 6.20242 6.43482 6.61385 6.74940 7.01160 7.11449 7.41317 8.42880 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.003346 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.590092 B = 8367.037939 C = 9922.049900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.375 6.375 3 C 0.109 3.891 4 C 0.104 3.896 5 N -0.719 5.719 6 C 0.521 3.479 7 O -0.572 6.572 8 C -0.071 4.071 9 C -0.180 4.180 10 C -0.095 4.095 11 C -0.235 4.235 12 C -0.120 4.120 13 C -0.186 4.186 14 C 0.097 3.903 15 C -0.487 4.487 16 H 0.070 0.930 17 C 0.035 3.965 18 N -0.837 5.837 19 Si 0.971 3.029 20 H -0.253 1.253 21 H -0.270 1.270 22 H -0.269 1.269 23 C -0.150 4.150 24 C -0.051 4.051 25 S -0.325 6.325 26 C -0.052 4.052 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.413 0.587 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.284 0.716 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 -2.909 -18.919 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.294 6.294 3 C 0.068 3.932 4 C -0.022 4.022 5 N -0.373 5.373 6 C 0.309 3.691 7 O -0.450 6.450 8 C -0.110 4.110 9 C -0.182 4.182 10 C -0.113 4.113 11 C -0.254 4.254 12 C -0.138 4.138 13 C -0.205 4.205 14 C 0.095 3.905 15 C -0.517 4.517 16 H 0.088 0.912 17 C -0.178 4.178 18 N -0.464 5.464 19 Si 0.792 3.208 20 H -0.177 1.177 21 H -0.194 1.194 22 H -0.194 1.194 23 C -0.189 4.189 24 C -0.199 4.199 25 S -0.099 6.099 26 C -0.200 4.200 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.249 0.751 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.140 0.860 43 H 0.116 0.884 44 H 0.129 0.871 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.639 -2.505 -19.163 20.435 hybrid contribution -2.026 -0.265 0.743 2.174 sum 4.613 -2.770 -18.421 19.191 Atomic orbital electron populations 1.23007 0.79913 1.04067 1.00832 1.87996 1.20909 1.25680 1.94865 1.22497 0.92343 0.84385 0.93995 1.21838 1.00816 0.96397 0.83157 1.45761 1.64236 1.22990 1.04327 1.21054 0.76820 0.85566 0.85676 1.90671 1.43490 1.22961 1.87924 1.20280 1.02952 0.98767 0.89031 1.19594 0.93552 1.04171 1.00850 1.20771 0.98323 0.96126 0.96079 1.20755 0.96382 1.06301 1.02000 1.20958 0.94486 0.99046 0.99355 1.21248 0.98569 0.99534 1.01152 1.17722 0.91684 0.89858 0.91194 1.19529 1.10144 1.26246 0.95798 0.91229 1.26629 1.00392 0.95668 0.95117 1.69857 1.32460 1.36953 1.07108 0.85424 0.77518 0.78925 0.78912 1.17689 1.19430 1.19382 1.23070 1.02900 1.01382 0.91540 1.24193 0.90837 1.04844 0.99999 1.87753 1.18349 1.97554 1.06256 1.23989 0.93692 1.07375 0.94965 0.94575 0.91758 0.88199 0.91759 0.90524 0.75052 0.86943 0.88606 0.86391 0.86550 0.87640 0.89077 0.90574 0.87514 0.88110 0.86012 0.88389 0.87080 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.24 113.37 1.16 1.45 16 2 O -0.38 -6.95 9.85 -148.98 -1.47 -8.41 16 3 C 0.11 1.85 0.46 -10.07 0.00 1.85 16 4 C 0.10 2.33 3.91 86.38 0.34 2.67 16 5 N -0.72 -18.75 5.18 -463.06 -2.40 -21.15 16 6 C 0.52 19.08 7.44 87.66 0.65 19.73 16 7 O -0.57 -26.64 16.03 -3.04 -0.05 -26.69 16 8 C -0.07 -2.64 5.20 29.10 0.15 -2.49 16 9 C -0.18 -8.55 4.43 -19.41 -0.09 -8.63 16 10 C -0.09 -4.22 9.66 22.22 0.21 -4.00 16 11 C -0.24 -10.61 10.05 22.46 0.23 -10.39 16 12 C -0.12 -5.90 10.02 22.22 0.22 -5.68 16 13 C -0.19 -10.27 8.64 22.73 0.20 -10.07 16 14 C 0.10 5.32 5.50 -21.29 -0.12 5.20 16 15 C -0.49 -26.15 7.99 23.46 0.19 -25.96 16 16 H 0.07 3.63 6.88 -2.91 -0.02 3.61 16 17 C 0.04 1.80 5.21 85.26 0.44 2.24 16 18 N -0.84 -44.75 11.11 21.83 0.24 -44.51 16 19 Si 0.97 38.80 29.58 68.60 2.03 40.83 16 20 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 21 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 C -0.15 -1.93 5.23 31.58 0.17 -1.77 16 24 C -0.05 -0.65 7.28 72.68 0.53 -0.12 16 25 S -0.32 -6.04 23.26 -56.49 -1.31 -7.35 16 26 C -0.05 -0.90 5.97 72.42 0.43 -0.47 16 27 H 0.04 0.73 6.32 -2.39 -0.02 0.72 16 28 H 0.06 0.79 6.36 -2.39 -0.02 0.77 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.59 6.54 -2.38 -0.02 1.57 16 31 H 0.08 1.81 8.11 -2.39 -0.02 1.79 16 32 H 0.41 8.82 7.99 -92.70 -0.74 8.08 16 33 H 0.11 3.31 8.05 -2.39 -0.02 3.29 16 34 H 0.10 3.62 7.16 -2.39 -0.02 3.60 16 35 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.09 5.29 6.50 -2.91 -0.02 5.28 16 39 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16 40 H 0.11 1.12 6.20 -2.38 -0.01 1.10 16 41 H 0.10 1.22 8.11 -2.39 -0.02 1.20 16 42 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 44 H 0.11 1.88 7.88 -2.39 -0.02 1.86 16 45 H 0.11 1.87 8.08 -2.38 -0.02 1.85 16 Total: -1.00 -69.18 374.65 2.02 -67.16 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 0.27 Total: 36.57 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 4.71 Total: -36.44 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -2.16 Total: -65.66 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.52 Total: -35.11 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Atomic # 16 Polarization: -6.04 SS G_CDS: -1.31 Total: -7.35 kcal Total: -69.18 2.02 -67.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928499975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.388 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds