Wall clock time and date at job start Tue Mar 31 2020 19:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99648 * 2 1 4 4 C 1.53001 * 109.59955 * 304.61970 * 3 2 1 5 5 N 1.46500 * 109.47040 * 302.86760 * 4 3 2 6 6 C 1.34771 * 119.99910 * 185.21254 * 5 4 3 7 7 O 1.21288 * 120.00299 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00131 * 180.02562 * 6 5 4 9 9 C 1.50702 * 109.47225 * 180.02562 * 8 6 5 10 10 C 1.37635 * 120.12242 * 264.99733 * 9 8 6 11 11 C 1.38618 * 120.24798 * 180.02562 * 10 9 8 12 12 C 1.38656 * 120.49804 * 359.97438 * 11 10 9 13 13 C 1.37600 * 120.25015 * 0.02562 * 12 11 10 14 14 C 1.40695 * 120.12760 * 84.72574 * 9 8 6 15 15 C 1.41392 * 120.24419 * 359.97438 * 14 9 8 16 16 H 1.07994 * 120.00417 * 328.12915 * 15 14 9 17 17 C 1.39954 * 119.99473 * 148.12866 * 15 14 9 18 18 N 1.30819 * 120.00143 * 349.64797 * 17 15 14 19 19 Si 1.86802 * 119.99643 * 169.65100 * 17 15 14 20 20 H 1.48503 * 109.47090 * 89.99866 * 19 17 15 21 21 H 1.48497 * 109.47078 * 209.99882 * 19 17 15 22 22 H 1.48495 * 109.47326 * 329.99828 * 19 17 15 23 23 C 1.52943 * 109.60044 * 64.94010 * 3 2 1 24 24 C 1.53707 * 112.48916 * 89.64725 * 23 3 2 25 25 S 1.83388 * 104.96993 * 2.82754 * 24 23 3 26 26 C 1.55151 * 109.45470 * 184.38721 * 3 2 1 27 27 H 1.09004 * 109.46577 * 178.47520 * 1 2 3 28 28 H 1.08996 * 109.47192 * 298.46907 * 1 2 3 29 29 H 1.08997 * 109.47409 * 58.47582 * 1 2 3 30 30 H 1.09000 * 109.47036 * 62.87088 * 4 3 2 31 31 H 1.09000 * 109.46758 * 182.86385 * 4 3 2 32 32 H 0.97003 * 120.00121 * 5.21298 * 5 4 3 33 33 H 1.09007 * 109.46485 * 299.99803 * 8 6 5 34 34 H 1.08995 * 109.47511 * 59.99261 * 8 6 5 35 35 H 1.07996 * 119.88066 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.75310 * 179.97438 * 11 10 9 37 37 H 1.08003 * 119.87764 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.12584 * 179.97438 * 13 12 11 39 39 H 0.97002 * 119.99599 * 179.97438 * 18 17 15 40 40 H 1.08998 * 108.88864 * 210.44251 * 23 3 2 41 41 H 1.09001 * 108.88884 * 328.85602 * 23 3 2 42 42 H 1.09008 * 110.34200 * 121.69679 * 24 23 3 43 43 H 1.09000 * 110.34257 * 243.84307 * 24 23 3 44 44 H 1.08999 * 111.13218 * 39.50955 * 26 3 2 45 45 H 1.09001 * 111.13088 * 163.68895 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4708 2.1074 -1.1862 5 7 1.7532 1.3881 -2.4307 6 6 1.4621 1.9556 -3.6180 7 8 0.9660 3.0617 -3.6561 8 6 1.7520 1.2154 -4.8983 9 6 1.3371 2.0628 -6.0734 10 6 0.0956 1.8935 -6.6429 11 6 -0.2885 2.6711 -7.7243 12 6 0.5708 3.6271 -8.2441 13 6 1.8167 3.8136 -7.6906 14 6 2.2152 3.0338 -6.5889 15 6 3.4906 3.2208 -6.0080 16 1 3.6319 3.0544 -4.9503 17 6 4.5699 3.6214 -6.8037 18 7 4.4551 3.6276 -8.1069 19 14 6.1746 4.1473 -6.0050 20 1 7.0564 2.9639 -5.8399 21 1 6.8499 5.1517 -6.8653 22 1 5.8931 4.7442 -4.6747 23 6 1.6613 2.0224 1.3052 24 6 2.6980 1.7678 2.4111 25 16 3.9937 0.7403 1.6184 26 6 3.5529 1.1844 -0.1119 27 1 -0.3633 -1.0274 -0.0273 28 1 -0.3633 0.4898 0.9034 29 1 -0.3634 0.5373 -0.8760 30 1 0.3940 2.2370 -1.0776 31 1 1.9533 3.0845 -1.2136 32 1 2.1496 0.5033 -2.4003 33 1 2.8195 1.0042 -4.9620 34 1 1.1950 0.2787 -4.9106 35 1 -0.5816 1.1515 -6.2464 36 1 -1.2644 2.5313 -8.1652 37 1 0.2610 4.2277 -9.0866 38 1 2.4845 4.5585 -8.0974 39 1 5.2031 3.9057 -8.6583 40 1 1.6044 3.0942 1.1148 41 1 0.6866 1.6757 1.6486 42 1 3.1215 2.7105 2.7578 43 1 2.2413 1.2301 3.2420 44 1 3.8356 0.3923 -0.8052 45 1 4.0018 2.1350 -0.4001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928499976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:07 Heat of formation + Delta-G solvation = -62.923816 kcal Electronic energy + Delta-G solvation = -26958.075306 eV Core-core repulsion = 23259.353111 eV Total energy + Delta-G solvation = -3698.722196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.13954 -38.79170 -37.25724 -34.73270 -33.75748 -33.55386 -31.72789 -30.13626 -29.44079 -28.01679 -26.64474 -26.21115 -24.97670 -23.72643 -20.92094 -20.54493 -20.34674 -19.30853 -17.39776 -17.18763 -17.05209 -16.26584 -15.93111 -15.56495 -15.41843 -15.00881 -14.67894 -14.49987 -14.41215 -13.88155 -13.58349 -13.44451 -13.38133 -13.02324 -12.67344 -12.53620 -12.26676 -12.22245 -12.16957 -11.71127 -11.61644 -11.55263 -11.15721 -11.05045 -11.00497 -10.97668 -10.66502 -10.38010 -10.37421 -9.82934 -9.47544 -9.37754 -9.20963 -9.17684 -8.80414 -7.86525 -7.30802 -7.21576 -6.66850 -4.34305 1.56919 2.04040 2.79596 2.95233 3.08636 3.13044 3.22078 3.26014 3.29965 3.64386 3.96957 4.06206 4.23911 4.44384 4.56605 4.70942 4.76657 4.98556 5.08289 5.13671 5.28470 5.32200 5.35336 5.38443 5.43654 5.52298 5.61099 5.69235 5.80930 6.02546 6.13675 6.28074 6.43653 6.50536 6.64454 6.80308 6.83919 7.13265 7.28852 7.42271 7.65778 7.86001 7.93715 8.08912 8.12382 8.33530 8.66220 8.81522 8.94674 9.02592 10.28593 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.003532 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.906126 B = 7926.584130 C = 9658.487551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.360 6.360 3 C 0.105 3.895 4 C 0.103 3.897 5 N -0.740 5.740 6 C 0.516 3.484 7 O -0.522 6.522 8 C -0.071 4.071 9 C -0.175 4.175 10 C -0.085 4.085 11 C -0.234 4.234 12 C -0.110 4.110 13 C -0.151 4.151 14 C 0.130 3.870 15 C -0.460 4.460 16 H 0.073 0.927 17 C 0.076 3.924 18 N -0.804 5.804 19 Si 0.903 3.097 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.155 4.155 24 C -0.066 4.066 25 S -0.281 6.281 26 C -0.053 4.053 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.400 0.600 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.278 0.722 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.118 0.882 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.193 -5.636 16.950 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.279 6.279 3 C 0.062 3.938 4 C -0.023 4.023 5 N -0.396 5.396 6 C 0.304 3.696 7 O -0.395 6.395 8 C -0.110 4.110 9 C -0.176 4.176 10 C -0.104 4.104 11 C -0.253 4.253 12 C -0.129 4.129 13 C -0.170 4.170 14 C 0.128 3.872 15 C -0.491 4.491 16 H 0.091 0.909 17 C -0.140 4.140 18 N -0.431 5.431 19 Si 0.728 3.272 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.194 4.194 24 C -0.214 4.214 25 S -0.054 6.054 26 C -0.201 4.201 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.235 0.765 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.136 0.864 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.435 -5.651 17.184 18.252 hybrid contribution -0.159 0.822 -0.128 0.847 sum -2.595 -4.829 17.056 17.915 Atomic orbital electron populations 1.22898 0.80991 1.03198 1.00459 1.88044 1.19745 1.25299 1.94772 1.22541 0.92988 0.84579 0.93649 1.21750 1.00986 0.96152 0.83452 1.46026 1.67199 1.21433 1.04912 1.21269 0.76953 0.86741 0.84641 1.90687 1.41941 1.19759 1.87139 1.20263 1.03335 0.97323 0.90103 1.19128 0.96855 1.01413 1.00246 1.20314 0.94943 0.98624 0.96472 1.20336 0.99406 1.03507 1.02033 1.20695 0.95119 0.98181 0.98866 1.21283 0.94703 1.01353 0.99682 1.17340 0.91617 0.87777 0.90484 1.19418 0.92907 1.41066 0.95701 0.90907 1.25836 1.00642 0.92987 0.94571 1.69788 1.32556 1.35986 1.04752 0.86395 0.81337 0.79195 0.80277 1.19547 1.20179 1.18708 1.22518 1.00692 1.02546 0.93655 1.23814 0.95870 1.01717 0.99985 1.87879 1.47504 1.64388 1.05598 1.24392 0.93752 1.06363 0.95617 0.89185 0.93867 0.93031 0.91281 0.90183 0.76514 0.88413 0.90574 0.89750 0.89616 0.89531 0.86702 0.91092 0.89415 0.89186 0.88998 0.88337 0.86396 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.26 101.05 1.04 1.21 16 2 O -0.36 -3.67 9.80 -35.23 -0.35 -4.02 16 3 C 0.10 1.01 0.43 -89.51 -0.04 0.97 16 4 C 0.10 1.22 3.77 -4.04 -0.02 1.20 16 5 N -0.74 -10.11 5.19 -60.29 -0.31 -10.42 16 6 C 0.52 9.60 7.42 -10.99 -0.08 9.52 16 7 O -0.52 -12.03 16.03 5.55 0.09 -11.94 16 8 C -0.07 -1.35 5.20 -29.03 -0.15 -1.50 16 9 C -0.17 -4.15 4.43 -103.91 -0.46 -4.61 16 10 C -0.09 -1.95 9.66 -39.66 -0.38 -2.33 16 11 C -0.23 -5.40 10.05 -39.29 -0.39 -5.79 16 12 C -0.11 -2.68 10.02 -39.66 -0.40 -3.07 16 13 C -0.15 -4.02 8.64 -38.87 -0.34 -4.36 16 14 C 0.13 3.45 5.51 -106.83 -0.59 2.86 16 15 C -0.46 -12.03 7.99 -37.74 -0.30 -12.33 16 16 H 0.07 1.85 6.86 -52.49 -0.36 1.49 16 17 C 0.08 1.90 5.24 -17.34 -0.09 1.81 16 18 N -0.80 -20.86 11.02 55.55 0.61 -20.25 16 19 Si 0.90 18.86 29.57 -169.99 -5.03 13.83 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 23 C -0.16 -1.22 5.47 -26.39 -0.14 -1.36 16 24 C -0.07 -0.52 7.38 37.53 0.28 -0.24 16 25 S -0.28 -3.04 23.13 -107.50 -2.49 -5.52 16 26 C -0.05 -0.54 6.12 38.30 0.23 -0.31 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.30 6.22 -51.93 -0.32 -0.02 16 29 H 0.05 0.48 6.33 -51.93 -0.33 0.15 16 30 H 0.07 0.83 6.63 -51.93 -0.34 0.48 16 31 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 32 H 0.40 4.65 7.81 -40.82 -0.32 4.33 16 33 H 0.10 1.85 7.17 -51.92 -0.37 1.48 16 34 H 0.08 1.22 8.05 -51.93 -0.42 0.81 16 35 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.12 3.15 6.43 -52.49 -0.34 2.82 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.09 0.63 7.80 -51.93 -0.41 0.22 16 41 H 0.09 0.62 5.87 -51.93 -0.30 0.32 16 42 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.12 1.20 7.92 -51.93 -0.41 0.79 16 45 H 0.11 1.09 8.11 -51.93 -0.42 0.67 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -31.24 373.89 -10.11 -41.35 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.44 Total: 9.68 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -1.84 Total: -18.34 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.30 Total: -30.67 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.26 Total: -15.96 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Atomic # 16 Polarization: -3.04 SS G_CDS: -2.49 Total: -5.52 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.24 -10.11 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928499976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.578 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds