Wall clock time and date at job start Tue Mar 31 2020 19:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99648 * 2 1 4 4 C 1.53001 * 109.59955 * 304.61970 * 3 2 1 5 5 N 1.46500 * 109.47040 * 302.86760 * 4 3 2 6 6 C 1.34771 * 119.99910 * 185.21254 * 5 4 3 7 7 O 1.21288 * 120.00299 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00131 * 180.02562 * 6 5 4 9 9 C 1.50702 * 109.47225 * 180.02562 * 8 6 5 10 10 C 1.37635 * 120.12242 * 264.99733 * 9 8 6 11 11 C 1.38618 * 120.24798 * 180.02562 * 10 9 8 12 12 C 1.38656 * 120.49804 * 359.97438 * 11 10 9 13 13 C 1.37600 * 120.25015 * 0.02562 * 12 11 10 14 14 C 1.40695 * 120.12760 * 84.72574 * 9 8 6 15 15 C 1.41392 * 120.24419 * 359.97438 * 14 9 8 16 16 H 1.07994 * 120.00417 * 328.12915 * 15 14 9 17 17 C 1.39954 * 119.99473 * 148.12866 * 15 14 9 18 18 N 1.30819 * 120.00143 * 349.64797 * 17 15 14 19 19 Si 1.86802 * 119.99643 * 169.65100 * 17 15 14 20 20 H 1.48503 * 109.47090 * 89.99866 * 19 17 15 21 21 H 1.48497 * 109.47078 * 209.99882 * 19 17 15 22 22 H 1.48495 * 109.47326 * 329.99828 * 19 17 15 23 23 C 1.52943 * 109.60044 * 64.94010 * 3 2 1 24 24 C 1.53707 * 112.48916 * 89.64725 * 23 3 2 25 25 S 1.83388 * 104.96993 * 2.82754 * 24 23 3 26 26 C 1.55151 * 109.45470 * 184.38721 * 3 2 1 27 27 H 1.09004 * 109.46577 * 178.47520 * 1 2 3 28 28 H 1.08996 * 109.47192 * 298.46907 * 1 2 3 29 29 H 1.08997 * 109.47409 * 58.47582 * 1 2 3 30 30 H 1.09000 * 109.47036 * 62.87088 * 4 3 2 31 31 H 1.09000 * 109.46758 * 182.86385 * 4 3 2 32 32 H 0.97003 * 120.00121 * 5.21298 * 5 4 3 33 33 H 1.09007 * 109.46485 * 299.99803 * 8 6 5 34 34 H 1.08995 * 109.47511 * 59.99261 * 8 6 5 35 35 H 1.07996 * 119.88066 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.75310 * 179.97438 * 11 10 9 37 37 H 1.08003 * 119.87764 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.12584 * 179.97438 * 13 12 11 39 39 H 0.97002 * 119.99599 * 179.97438 * 18 17 15 40 40 H 1.08998 * 108.88864 * 210.44251 * 23 3 2 41 41 H 1.09001 * 108.88884 * 328.85602 * 23 3 2 42 42 H 1.09008 * 110.34200 * 121.69679 * 24 23 3 43 43 H 1.09000 * 110.34257 * 243.84307 * 24 23 3 44 44 H 1.08999 * 111.13218 * 39.50955 * 26 3 2 45 45 H 1.09001 * 111.13088 * 163.68895 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4708 2.1074 -1.1862 5 7 1.7532 1.3881 -2.4307 6 6 1.4621 1.9556 -3.6180 7 8 0.9660 3.0617 -3.6561 8 6 1.7520 1.2154 -4.8983 9 6 1.3371 2.0628 -6.0734 10 6 0.0956 1.8935 -6.6429 11 6 -0.2885 2.6711 -7.7243 12 6 0.5708 3.6271 -8.2441 13 6 1.8167 3.8136 -7.6906 14 6 2.2152 3.0338 -6.5889 15 6 3.4906 3.2208 -6.0080 16 1 3.6319 3.0544 -4.9503 17 6 4.5699 3.6214 -6.8037 18 7 4.4551 3.6276 -8.1069 19 14 6.1746 4.1473 -6.0050 20 1 7.0564 2.9639 -5.8399 21 1 6.8499 5.1517 -6.8653 22 1 5.8931 4.7442 -4.6747 23 6 1.6613 2.0224 1.3052 24 6 2.6980 1.7678 2.4111 25 16 3.9937 0.7403 1.6184 26 6 3.5529 1.1844 -0.1119 27 1 -0.3633 -1.0274 -0.0273 28 1 -0.3633 0.4898 0.9034 29 1 -0.3634 0.5373 -0.8760 30 1 0.3940 2.2370 -1.0776 31 1 1.9533 3.0845 -1.2136 32 1 2.1496 0.5033 -2.4003 33 1 2.8195 1.0042 -4.9620 34 1 1.1950 0.2787 -4.9106 35 1 -0.5816 1.1515 -6.2464 36 1 -1.2644 2.5313 -8.1652 37 1 0.2610 4.2277 -9.0866 38 1 2.4845 4.5585 -8.0974 39 1 5.2031 3.9057 -8.6583 40 1 1.6044 3.0942 1.1148 41 1 0.6866 1.6757 1.6486 42 1 3.1215 2.7105 2.7578 43 1 2.2413 1.2301 3.2420 44 1 3.8356 0.3923 -0.8052 45 1 4.0018 2.1350 -0.4001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928499976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:06 Heat of formation + Delta-G solvation = -81.496956 kcal Electronic energy + Delta-G solvation = -26958.880698 eV Core-core repulsion = 23259.353111 eV Total energy + Delta-G solvation = -3699.527587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19695 -40.10918 -38.97238 -35.66373 -35.43841 -34.79926 -33.41431 -31.34744 -30.96391 -29.23252 -27.86489 -27.13496 -26.71169 -24.62077 -22.80452 -22.07258 -21.31400 -20.72282 -19.05012 -18.34558 -18.03444 -17.30346 -17.23949 -17.08619 -16.33209 -16.26896 -16.03215 -15.93395 -15.33827 -15.15509 -15.14493 -14.67756 -14.40191 -14.31232 -14.16922 -13.71837 -13.56362 -13.36313 -13.02210 -12.99212 -12.91259 -12.85578 -12.76173 -12.59175 -12.47123 -12.21614 -12.11989 -11.77666 -11.31485 -11.21753 -11.13667 -11.03577 -10.83687 -10.53304 -10.05113 -9.18534 -9.11385 -8.69151 -8.53699 -6.30029 0.80906 1.00552 1.13791 1.31223 1.37077 1.48098 1.52516 1.83508 2.21154 2.22360 2.67572 2.83347 3.29842 3.41737 3.70815 3.77536 3.96382 4.04018 4.15772 4.28593 4.37974 4.38953 4.41128 4.45291 4.56735 4.57839 4.62882 4.67631 4.71641 4.74393 4.78670 4.82541 4.88757 5.00648 5.08696 5.22998 5.36436 5.46881 5.55055 5.80036 6.04367 6.09845 6.18099 6.20928 6.44184 6.62465 6.76115 7.02162 7.12260 7.42276 8.43705 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.003532 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.906126 B = 7926.584130 C = 9658.487551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.372 6.372 3 C 0.115 3.885 4 C 0.104 3.896 5 N -0.719 5.719 6 C 0.521 3.479 7 O -0.572 6.572 8 C -0.071 4.071 9 C -0.180 4.180 10 C -0.095 4.095 11 C -0.235 4.235 12 C -0.121 4.121 13 C -0.185 4.185 14 C 0.097 3.903 15 C -0.485 4.485 16 H 0.070 0.930 17 C 0.035 3.965 18 N -0.837 5.837 19 Si 0.971 3.029 20 H -0.257 1.257 21 H -0.271 1.271 22 H -0.265 1.265 23 C -0.154 4.154 24 C -0.053 4.053 25 S -0.326 6.326 26 C -0.051 4.051 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.413 0.587 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.283 0.717 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.879 -6.749 18.881 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.291 6.291 3 C 0.073 3.927 4 C -0.022 4.022 5 N -0.373 5.373 6 C 0.309 3.691 7 O -0.451 6.451 8 C -0.111 4.111 9 C -0.181 4.181 10 C -0.113 4.113 11 C -0.254 4.254 12 C -0.139 4.139 13 C -0.204 4.204 14 C 0.095 3.905 15 C -0.515 4.515 16 H 0.088 0.912 17 C -0.178 4.178 18 N -0.465 5.465 19 Si 0.792 3.208 20 H -0.182 1.182 21 H -0.196 1.196 22 H -0.190 1.190 23 C -0.193 4.193 24 C -0.201 4.201 25 S -0.099 6.099 26 C -0.199 4.199 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.250 0.750 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.118 -6.813 19.144 20.558 hybrid contribution -0.074 1.105 -0.710 1.315 sum -3.192 -5.708 18.435 19.560 Atomic orbital electron populations 1.23023 0.79951 1.04092 1.00790 1.88042 1.20862 1.25325 1.94824 1.22437 0.92346 0.84410 0.93504 1.21860 1.01289 0.95889 0.83172 1.45765 1.65482 1.21685 1.04382 1.21045 0.76481 0.85911 0.85654 1.90671 1.44704 1.21788 1.87894 1.20283 1.03758 0.98000 0.89015 1.19606 0.96712 1.00743 1.01067 1.20761 0.95163 0.99171 0.96249 1.20757 1.00333 1.02512 1.01821 1.20965 0.94594 0.98905 0.99453 1.21285 0.95745 1.02175 1.01241 1.17726 0.92712 0.88926 0.91155 1.19561 0.93582 1.42692 0.95685 0.91168 1.26617 1.03750 0.92528 0.94918 1.69866 1.33773 1.36820 1.05995 0.85374 0.77285 0.79141 0.78970 1.18164 1.19569 1.18958 1.22515 1.01301 1.02912 0.92565 1.23912 0.94517 1.01716 0.99946 1.88040 1.49539 1.65612 1.06753 1.24380 0.94269 1.06156 0.95119 0.88030 0.92204 0.94068 0.90881 0.91270 0.75048 0.88499 0.87044 0.86432 0.86558 0.87665 0.88890 0.90626 0.88513 0.87708 0.87704 0.86998 0.86661 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.26 113.37 1.16 1.40 16 2 O -0.37 -6.73 9.80 -148.98 -1.46 -8.19 16 3 C 0.12 2.00 0.43 -10.08 0.00 2.00 16 4 C 0.10 2.31 3.77 86.38 0.33 2.64 16 5 N -0.72 -18.66 5.19 -463.06 -2.41 -21.06 16 6 C 0.52 18.99 7.42 87.66 0.65 19.64 16 7 O -0.57 -26.52 16.03 -3.05 -0.05 -26.57 16 8 C -0.07 -2.64 5.20 29.10 0.15 -2.49 16 9 C -0.18 -8.50 4.43 -19.41 -0.09 -8.59 16 10 C -0.10 -4.22 9.66 22.22 0.21 -4.00 16 11 C -0.24 -10.57 10.05 22.46 0.23 -10.34 16 12 C -0.12 -5.92 10.02 22.22 0.22 -5.70 16 13 C -0.18 -10.22 8.64 22.73 0.20 -10.03 16 14 C 0.10 5.28 5.51 -21.29 -0.12 5.16 16 15 C -0.48 -26.05 7.99 23.46 0.19 -25.86 16 16 H 0.07 3.67 6.86 -2.91 -0.02 3.65 16 17 C 0.03 1.79 5.24 85.26 0.45 2.23 16 18 N -0.84 -44.84 11.02 21.83 0.24 -44.60 16 19 Si 0.97 39.22 29.57 68.60 2.03 41.25 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 23 C -0.15 -2.01 5.47 30.81 0.17 -1.84 16 24 C -0.05 -0.71 7.38 72.22 0.53 -0.17 16 25 S -0.33 -6.64 23.13 -56.49 -1.31 -7.94 16 26 C -0.05 -0.99 6.12 72.72 0.44 -0.54 16 27 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.06 0.64 6.22 -2.39 -0.01 0.62 16 29 H 0.04 0.67 6.33 -2.39 -0.02 0.65 16 30 H 0.07 1.62 6.63 -2.39 -0.02 1.61 16 31 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 32 H 0.41 8.83 7.81 -92.71 -0.72 8.11 16 33 H 0.10 3.62 7.17 -2.38 -0.02 3.60 16 34 H 0.11 3.28 8.05 -2.39 -0.02 3.26 16 35 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 36 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.09 5.41 6.43 -2.91 -0.02 5.39 16 39 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 40 H 0.10 1.13 7.80 -2.39 -0.02 1.11 16 41 H 0.10 1.09 5.87 -2.39 -0.01 1.07 16 42 H 0.10 1.15 8.14 -2.38 -0.02 1.14 16 43 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.12 2.24 7.92 -2.39 -0.02 2.22 16 45 H 0.11 2.08 8.11 -2.39 -0.02 2.06 16 Total: -1.00 -69.64 373.89 2.06 -67.58 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.29 Total: 36.02 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 4.72 Total: -36.49 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -2.16 Total: -65.66 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -1.51 Total: -34.76 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Atomic # 16 Polarization: -6.64 SS G_CDS: -1.31 Total: -7.94 kcal Total: -69.64 2.06 -67.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928499976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.917 kcal (2) G-P(sol) polarization free energy of solvation -69.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds