Wall clock time and date at job start Tue Mar 31 2020 19:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99864 * 2 1 4 4 C 1.53000 * 109.46957 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47089 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47056 * 179.97438 * 5 4 3 7 7 C 1.34259 * 125.75316 * 125.00433 * 6 5 4 8 8 C 1.38045 * 107.41939 * 180.02562 * 7 6 5 9 9 C 1.47428 * 126.41432 * 180.02562 * 8 7 6 10 10 O 1.21602 * 120.00252 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99946 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99997 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47840 * 34.99187 * 12 11 9 14 14 C 1.50699 * 109.47165 * 154.99795 * 12 11 9 15 15 H 1.07998 * 120.00140 * 359.97438 * 14 12 11 16 16 C 1.37879 * 120.00134 * 179.97438 * 14 12 11 17 17 N 1.31521 * 119.99682 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00185 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46999 * 59.99768 * 18 16 14 20 20 H 1.48506 * 109.46910 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47179 * 299.99734 * 18 16 14 22 22 C 1.52999 * 109.46779 * 274.99167 * 12 11 9 23 23 F 1.39897 * 109.47195 * 60.00257 * 22 12 11 24 24 F 1.39898 * 109.47117 * 180.02562 * 22 12 11 25 25 F 1.39906 * 109.47525 * 300.00376 * 22 12 11 26 26 C 1.41290 * 107.17003 * 359.97438 * 8 7 6 27 27 N 1.30448 * 108.01917 * 0.02562 * 26 8 7 28 28 H 1.09007 * 109.46928 * 60.00041 * 1 2 3 29 29 H 1.09000 * 109.47018 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46981 * 300.00870 * 1 2 3 31 31 H 1.09000 * 109.47882 * 59.99539 * 3 2 1 32 32 H 1.09010 * 109.46688 * 299.99533 * 3 2 1 33 33 H 1.09004 * 109.47226 * 59.99640 * 4 3 2 34 34 H 1.08996 * 109.46992 * 299.99283 * 4 3 2 35 35 H 1.09004 * 109.46871 * 60.00047 * 5 4 3 36 36 H 1.09001 * 109.47377 * 300.00510 * 5 4 3 37 37 H 1.08005 * 126.28791 * 0.26010 * 7 6 5 38 38 H 0.97000 * 120.00137 * 359.97438 * 11 9 8 39 39 H 0.97003 * 119.99688 * 179.97438 * 17 16 14 40 40 H 1.07998 * 125.98994 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6182 2.4667 0.0012 7 6 6.4502 3.0271 -0.8910 8 6 7.7365 2.6751 -0.5344 9 6 8.9758 3.0663 -1.2306 10 8 8.9206 3.7671 -2.2228 11 7 10.1699 2.6465 -0.7678 12 6 11.4015 3.0357 -1.4593 13 1 11.2923 4.0451 -1.8556 14 6 12.5549 2.9985 -0.4901 15 1 12.3873 2.7139 0.5381 16 6 13.8242 3.3278 -0.9162 17 7 14.0283 3.6740 -2.1685 18 14 15.2539 3.2825 0.2853 19 1 15.4024 1.9075 0.8261 20 1 16.5024 3.6757 -0.4160 21 1 14.9934 4.2276 1.4006 22 6 11.6700 2.0627 -2.6091 23 9 10.5993 2.0971 -3.5088 24 9 12.8463 2.4339 -3.2690 25 9 11.8102 0.7669 -2.1005 26 6 7.6431 1.8707 0.6234 27 7 6.3811 1.7534 0.9324 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8575 0.6435 -0.8891 34 1 3.8567 0.6440 0.8909 35 1 3.8358 3.1239 0.8896 36 1 3.8365 3.1228 -0.8904 37 1 6.1657 3.6435 -1.7311 38 1 10.2141 2.0872 0.0235 39 1 14.9213 3.9061 -2.4681 40 1 8.4711 1.4296 1.1583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928799879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:57 Heat of formation + Delta-G solvation = -144.675829 kcal Electronic energy + Delta-G solvation = -28890.727250 eV Core-core repulsion = 24100.310066 eV Total energy + Delta-G solvation = -4790.417184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.28611 -45.93886 -45.55512 -41.29346 -38.57102 -38.34122 -35.06709 -34.57916 -32.54519 -31.39801 -30.24351 -28.37532 -27.31636 -25.52675 -24.51865 -22.88224 -22.55646 -21.06387 -20.62125 -19.57231 -18.14285 -17.06757 -16.78554 -16.73482 -16.61665 -16.55487 -16.05822 -15.67325 -15.39164 -14.99787 -14.88112 -14.56287 -14.26980 -14.08923 -13.60859 -13.08622 -12.87757 -12.81679 -12.63833 -12.55676 -12.41806 -12.33499 -12.24192 -12.20551 -11.91843 -11.75978 -11.58975 -11.51016 -11.14463 -10.91677 -10.82607 -10.74433 -10.36268 -10.15241 -9.63488 -9.58119 -9.22017 -8.68682 -8.60764 -8.15141 -6.19896 -4.43684 1.65324 2.21560 2.35915 3.22748 3.27457 3.27584 3.29124 3.91101 3.98208 4.21722 4.29645 4.50809 4.56952 4.64630 4.69815 4.80001 4.83801 4.87488 4.92530 4.96145 4.97132 5.02232 5.22788 5.38201 5.46759 5.60051 5.76516 5.83069 5.93244 5.97515 6.28852 6.47180 6.66047 6.81091 7.00804 7.25130 7.51032 7.57609 7.67022 8.41991 8.54314 8.98852 9.24147 10.71574 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.024600 B = 0.002344 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.961162 B =11940.046608 C =12365.080121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.133 4.133 5 C 0.138 3.862 6 N -0.367 5.367 7 C 0.121 3.879 8 C -0.278 4.278 9 C 0.584 3.416 10 O -0.546 6.546 11 N -0.707 5.707 12 C 0.247 3.753 13 H 0.086 0.914 14 C -0.551 4.551 15 H 0.077 0.923 16 C 0.064 3.936 17 N -0.840 5.840 18 Si 0.915 3.085 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.417 3.583 23 F -0.217 7.217 24 F -0.137 7.137 25 F -0.209 7.209 26 C 0.083 3.917 27 N -0.299 5.299 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.187 0.813 38 H 0.397 0.603 39 H 0.268 0.732 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.221 -2.726 5.003 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.172 4.172 5 C 0.016 3.984 6 N -0.147 5.147 7 C -0.029 4.029 8 C -0.293 4.293 9 C 0.371 3.629 10 O -0.425 6.425 11 N -0.355 5.355 12 C 0.141 3.859 13 H 0.103 0.897 14 C -0.588 4.588 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.741 3.259 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.361 3.639 23 F -0.199 7.199 24 F -0.118 7.118 25 F -0.191 7.191 26 C -0.104 4.104 27 N -0.119 5.119 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.204 0.796 38 H 0.231 0.769 39 H 0.079 0.921 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -21.966 -2.824 4.926 22.688 hybrid contribution 1.204 0.036 0.085 1.207 sum -20.763 -2.788 5.011 21.540 Atomic orbital electron populations 1.22767 0.80684 1.02999 1.00050 1.87899 1.19949 1.27627 1.95433 1.22391 0.93202 0.85129 1.00524 1.21761 0.93304 0.96612 1.05485 1.21582 0.74364 0.98072 1.04366 1.48381 1.06477 1.38779 1.21033 1.22947 0.89423 0.96222 0.94321 1.20465 0.93990 1.12075 1.02747 1.17286 0.82528 0.79744 0.83369 1.90761 1.87174 1.38563 1.25984 1.45844 1.05591 1.52885 1.31220 1.19699 0.82848 0.93953 0.89371 0.89682 1.20843 0.91004 1.50768 0.96207 0.90467 1.25087 0.99331 0.94388 0.95637 1.70401 1.23040 1.39850 1.14027 0.86275 0.80371 0.78816 0.80393 1.19824 1.20939 1.19800 1.23139 0.74479 0.81062 0.85266 1.93068 1.58417 1.96591 1.71857 1.93402 1.45835 1.90139 1.82469 1.92989 1.95868 1.42633 1.87643 1.24139 0.94701 0.96489 0.95110 1.77105 1.03629 1.17639 1.13498 0.93942 0.89457 0.93952 0.92852 0.92930 0.90227 0.89245 0.89244 0.88139 0.79607 0.76895 0.92110 0.79203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.45 10.70 -35.23 -0.38 -3.83 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.13 -1.06 5.76 -26.73 -0.15 -1.22 16 5 C 0.14 1.00 6.49 -4.04 -0.03 0.98 16 6 N -0.37 -4.28 3.65 -60.81 -0.22 -4.50 16 7 C 0.12 1.60 11.25 -16.56 -0.19 1.41 16 8 C -0.28 -4.45 6.13 -105.07 -0.64 -5.09 16 9 C 0.58 11.83 7.35 -12.52 -0.09 11.74 16 10 O -0.55 -12.90 15.47 5.28 0.08 -12.81 16 11 N -0.71 -14.63 4.98 -56.01 -0.28 -14.91 16 12 C 0.25 6.16 2.21 -69.08 -0.15 6.01 16 13 H 0.09 2.37 7.58 -51.93 -0.39 1.97 16 14 C -0.55 -14.02 8.46 -34.44 -0.29 -14.32 16 15 H 0.08 1.84 7.74 -52.49 -0.41 1.43 16 16 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 17 N -0.84 -23.06 9.50 55.43 0.53 -22.53 16 18 Si 0.91 20.10 29.54 -169.99 -5.02 15.08 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 22 C 0.42 10.79 2.81 37.16 0.10 10.89 16 23 F -0.22 -5.60 15.67 2.25 0.04 -5.57 16 24 F -0.14 -3.82 12.91 2.25 0.03 -3.80 16 25 F -0.21 -5.23 16.94 2.25 0.04 -5.19 16 26 C 0.08 1.17 11.50 -16.98 -0.20 0.97 16 27 N -0.30 -4.09 12.33 30.86 0.38 -3.71 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.47 8.06 -51.93 -0.42 0.05 16 37 H 0.19 2.04 8.06 -52.48 -0.42 1.61 16 38 H 0.40 7.05 7.49 -40.82 -0.31 6.74 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.19 2.16 7.50 -52.49 -0.39 1.77 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -33.35 356.99 -4.68 -38.04 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.86 Total: 3.48 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: -0.40 Total: 14.88 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.41 Total: -45.66 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.30 Total: -16.64 kcal Atomic # 9 Polarization: -14.65 SS G_CDS: 0.10 Total: -14.55 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.35 -4.68 -38.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.639 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds