Wall clock time and date at job start Tue Mar 31 2020 19:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99864 * 2 1 4 4 C 1.53000 * 109.46957 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47089 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47056 * 179.97438 * 5 4 3 7 7 C 1.34259 * 125.75316 * 125.00433 * 6 5 4 8 8 C 1.38045 * 107.41939 * 180.02562 * 7 6 5 9 9 C 1.47428 * 126.41432 * 180.02562 * 8 7 6 10 10 O 1.21602 * 120.00252 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99946 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99997 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47840 * 34.99187 * 12 11 9 14 14 C 1.50699 * 109.47165 * 154.99795 * 12 11 9 15 15 H 1.07998 * 120.00140 * 359.97438 * 14 12 11 16 16 C 1.37879 * 120.00134 * 179.97438 * 14 12 11 17 17 N 1.31521 * 119.99682 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00185 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46999 * 59.99768 * 18 16 14 20 20 H 1.48506 * 109.46910 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47179 * 299.99734 * 18 16 14 22 22 C 1.52999 * 109.46779 * 274.99167 * 12 11 9 23 23 F 1.39897 * 109.47195 * 60.00257 * 22 12 11 24 24 F 1.39898 * 109.47117 * 180.02562 * 22 12 11 25 25 F 1.39906 * 109.47525 * 300.00376 * 22 12 11 26 26 C 1.41290 * 107.17003 * 359.97438 * 8 7 6 27 27 N 1.30448 * 108.01917 * 0.02562 * 26 8 7 28 28 H 1.09007 * 109.46928 * 60.00041 * 1 2 3 29 29 H 1.09000 * 109.47018 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46981 * 300.00870 * 1 2 3 31 31 H 1.09000 * 109.47882 * 59.99539 * 3 2 1 32 32 H 1.09010 * 109.46688 * 299.99533 * 3 2 1 33 33 H 1.09004 * 109.47226 * 59.99640 * 4 3 2 34 34 H 1.08996 * 109.46992 * 299.99283 * 4 3 2 35 35 H 1.09004 * 109.46871 * 60.00047 * 5 4 3 36 36 H 1.09001 * 109.47377 * 300.00510 * 5 4 3 37 37 H 1.08005 * 126.28791 * 0.26010 * 7 6 5 38 38 H 0.97000 * 120.00137 * 359.97438 * 11 9 8 39 39 H 0.97003 * 119.99688 * 179.97438 * 17 16 14 40 40 H 1.07998 * 125.98994 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6182 2.4667 0.0012 7 6 6.4502 3.0271 -0.8910 8 6 7.7365 2.6751 -0.5344 9 6 8.9758 3.0663 -1.2306 10 8 8.9206 3.7671 -2.2228 11 7 10.1699 2.6465 -0.7678 12 6 11.4015 3.0357 -1.4593 13 1 11.2923 4.0451 -1.8556 14 6 12.5549 2.9985 -0.4901 15 1 12.3873 2.7139 0.5381 16 6 13.8242 3.3278 -0.9162 17 7 14.0283 3.6740 -2.1685 18 14 15.2539 3.2825 0.2853 19 1 15.4024 1.9075 0.8261 20 1 16.5024 3.6757 -0.4160 21 1 14.9934 4.2276 1.4006 22 6 11.6700 2.0627 -2.6091 23 9 10.5993 2.0971 -3.5088 24 9 12.8463 2.4339 -3.2690 25 9 11.8102 0.7669 -2.1005 26 6 7.6431 1.8707 0.6234 27 7 6.3811 1.7534 0.9324 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8575 0.6435 -0.8891 34 1 3.8567 0.6440 0.8909 35 1 3.8358 3.1239 0.8896 36 1 3.8365 3.1228 -0.8904 37 1 6.1657 3.6435 -1.7311 38 1 10.2141 2.0872 0.0235 39 1 14.9213 3.9061 -2.4681 40 1 8.4711 1.4296 1.1583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928799879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:57 Heat of formation + Delta-G solvation = -167.992576 kcal Electronic energy + Delta-G solvation = -28891.738340 eV Core-core repulsion = 24100.310066 eV Total energy + Delta-G solvation = -4791.428274 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.37572 -48.01086 -47.68686 -42.35913 -40.09356 -38.96466 -36.42172 -35.81587 -34.40449 -32.28443 -31.52105 -29.96981 -27.97078 -26.58416 -26.16166 -24.35040 -23.28946 -22.69418 -21.60254 -21.07563 -19.55021 -18.81485 -18.71618 -18.55070 -17.81736 -17.29668 -17.18591 -16.83347 -16.75847 -16.42982 -15.98652 -15.76281 -15.32824 -15.19692 -14.93876 -14.90528 -14.77984 -14.43591 -14.34411 -14.23764 -14.01158 -13.88306 -13.72679 -13.30415 -13.23019 -12.99971 -12.74604 -12.72224 -12.57950 -12.29981 -12.17125 -12.07932 -11.83061 -11.56215 -10.83113 -10.64249 -10.63485 -10.56441 -10.07875 -9.62974 -8.17649 -6.48179 0.55013 1.17398 1.35259 1.49384 1.51899 1.59958 2.29416 2.38548 2.53228 2.66225 2.77120 2.98065 3.49291 3.79542 3.81996 3.87279 3.91161 4.01810 4.08942 4.15701 4.23220 4.27909 4.37176 4.45794 4.49433 4.55897 4.56945 4.74705 4.86710 4.97715 5.00821 5.10438 5.40320 5.48058 5.60608 5.68879 5.87288 6.22670 6.50779 6.56366 6.82830 7.20791 7.43722 8.74799 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.024600 B = 0.002344 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.961162 B =11940.046608 C =12365.080121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.424 6.424 3 C 0.065 3.935 4 C -0.126 4.126 5 C 0.129 3.871 6 N -0.356 5.356 7 C 0.137 3.863 8 C -0.312 4.312 9 C 0.584 3.416 10 O -0.588 6.588 11 N -0.703 5.703 12 C 0.254 3.746 13 H 0.048 0.952 14 C -0.560 4.560 15 H 0.093 0.907 16 C 0.014 3.986 17 N -0.875 5.875 18 Si 0.983 3.017 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.262 1.262 22 C 0.413 3.587 23 F -0.219 7.219 24 F -0.151 7.151 25 F -0.204 7.204 26 C 0.086 3.914 27 N -0.312 5.312 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.135 0.865 37 H 0.209 0.791 38 H 0.411 0.589 39 H 0.268 0.732 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.804 -2.752 6.563 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C -0.012 4.012 4 C -0.164 4.164 5 C 0.010 3.990 6 N -0.134 5.134 7 C -0.015 4.015 8 C -0.327 4.327 9 C 0.373 3.627 10 O -0.470 6.470 11 N -0.352 5.352 12 C 0.147 3.853 13 H 0.066 0.934 14 C -0.597 4.597 15 H 0.111 0.889 16 C -0.191 4.191 17 N -0.509 5.509 18 Si 0.806 3.194 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.187 1.187 22 C 0.357 3.643 23 F -0.201 7.201 24 F -0.132 7.132 25 F -0.186 7.186 26 C -0.101 4.101 27 N -0.132 5.132 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.153 0.847 37 H 0.226 0.774 38 H 0.248 0.752 39 H 0.078 0.922 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -23.607 -2.881 6.537 24.664 hybrid contribution 1.525 0.028 -0.427 1.584 sum -22.082 -2.853 6.109 23.089 Atomic orbital electron populations 1.22924 0.79180 1.03724 1.01148 1.87847 1.21748 1.29111 1.95704 1.22459 0.91780 0.84676 1.02255 1.21647 0.94738 0.96537 1.03510 1.22041 0.71619 0.98211 1.07148 1.48737 1.07904 1.37101 1.19677 1.23265 0.88769 0.95128 0.94361 1.20182 0.93092 1.15031 1.04390 1.17833 0.83356 0.78634 0.82861 1.90726 1.87778 1.40482 1.27970 1.45689 1.04709 1.53315 1.31523 1.19300 0.84712 0.91984 0.89307 0.93378 1.21199 0.91191 1.50425 0.96887 0.88908 1.26008 1.02096 0.93831 0.97212 1.70536 1.23512 1.40880 1.15938 0.85216 0.76750 0.79166 0.78225 1.19075 1.21099 1.18674 1.23323 0.74009 0.81502 0.85448 1.93057 1.58401 1.96631 1.72021 1.93374 1.46674 1.90330 1.82808 1.92985 1.95833 1.42211 1.87524 1.24404 0.95434 0.95864 0.94438 1.77092 1.03581 1.18231 1.14326 0.92805 0.89090 0.92829 0.91232 0.90964 0.91946 0.91476 0.87182 0.84690 0.77405 0.75199 0.92215 0.77431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.92 10.70 -148.98 -1.59 -8.51 16 3 C 0.07 0.69 5.94 71.98 0.43 1.12 16 4 C -0.13 -1.78 5.76 30.59 0.18 -1.60 16 5 C 0.13 1.48 6.49 86.38 0.56 2.04 16 6 N -0.36 -7.48 3.65 -346.30 -1.26 -8.74 16 7 C 0.14 3.37 11.25 84.28 0.95 4.32 16 8 C -0.31 -9.73 6.13 -20.15 -0.12 -9.85 16 9 C 0.58 23.82 7.35 86.66 0.64 24.46 16 10 O -0.59 -28.39 15.47 -4.04 -0.06 -28.45 16 11 N -0.70 -29.27 4.98 -449.39 -2.24 -31.50 16 12 C 0.25 12.93 2.21 44.24 0.10 13.03 16 13 H 0.05 2.81 7.58 -2.39 -0.02 2.79 16 14 C -0.56 -28.44 8.46 25.60 0.22 -28.23 16 15 H 0.09 4.31 7.74 -2.91 -0.02 4.29 16 16 C 0.01 0.71 5.20 84.65 0.44 1.15 16 17 N -0.87 -48.80 9.50 21.45 0.20 -48.59 16 18 Si 0.98 40.71 29.54 68.60 2.03 42.74 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 20 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 22 C 0.41 21.80 2.81 71.98 0.20 22.00 16 23 F -0.22 -11.54 15.67 44.97 0.70 -10.84 16 24 F -0.15 -8.60 12.91 44.97 0.58 -8.02 16 25 F -0.20 -10.18 16.94 44.97 0.76 -9.41 16 26 C 0.09 2.30 11.50 85.65 0.99 3.28 16 27 N -0.31 -8.03 12.33 -56.28 -0.69 -8.73 16 28 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.14 0.68 8.06 -2.39 -0.02 0.66 16 37 H 0.21 4.06 8.06 -2.91 -0.02 4.04 16 38 H 0.41 14.40 7.49 -92.71 -0.69 13.70 16 39 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.21 4.44 7.50 -2.91 -0.02 4.42 16 Total: -1.00 -73.31 356.99 4.64 -68.67 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.40 Total: 18.19 kcal Atomic # 6 Polarization: 27.38 SS G_CDS: 5.82 Total: 33.20 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -3.99 Total: -97.56 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.66 Total: -36.97 kcal Atomic # 9 Polarization: -30.31 SS G_CDS: 2.05 Total: -28.27 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -73.31 4.64 -68.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.319 kcal (2) G-P(sol) polarization free energy of solvation -73.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds