Wall clock time and date at job start Tue Mar 31 2020 18:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42905 * 109.46892 * 2 1 4 4 C 1.42899 * 113.99490 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46922 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47452 * 179.97438 * 5 4 3 7 7 C 1.34259 * 125.75446 * 124.99761 * 6 5 4 8 8 C 1.38044 * 107.41878 * 180.02562 * 7 6 5 9 9 C 1.47431 * 126.41606 * 179.97438 * 8 7 6 10 10 O 1.21601 * 120.00003 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99891 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00015 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46733 * 325.00143 * 12 11 9 14 14 C 1.50694 * 109.47115 * 204.99781 * 12 11 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.53000 * 109.47145 * 84.99707 * 12 11 9 23 23 F 1.39903 * 109.47440 * 180.02562 * 22 12 11 24 24 F 1.39899 * 109.47255 * 300.00046 * 22 12 11 25 25 F 1.39900 * 109.47102 * 59.99912 * 22 12 11 26 26 C 1.41291 * 107.17000 * 0.24698 * 8 7 6 27 27 N 1.30449 * 108.02113 * 359.58424 * 26 8 7 28 28 H 1.09000 * 109.47056 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46667 * 299.99994 * 1 2 3 30 30 H 1.08999 * 109.47355 * 59.99939 * 1 2 3 31 31 H 1.08996 * 109.46942 * 240.00051 * 2 1 3 32 32 H 1.08999 * 109.47355 * 120.00061 * 2 1 3 33 33 H 1.09000 * 109.47637 * 60.00168 * 4 3 2 34 34 H 1.09004 * 109.47200 * 299.99312 * 4 3 2 35 35 H 1.09010 * 109.47229 * 59.99568 * 5 4 3 36 36 H 1.08999 * 109.47149 * 299.99928 * 5 4 3 37 37 H 1.08004 * 126.29070 * 359.97438 * 7 6 5 38 38 H 0.97005 * 120.00104 * 359.97438 * 11 9 8 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.07997 * 125.99244 * 179.73595 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 7 5.2858 3.0541 -0.0012 7 6 6.0185 3.7387 -0.8939 8 6 7.3445 3.5936 -0.5384 9 6 8.5062 4.1743 -1.2360 10 8 8.3405 4.8577 -2.2281 11 7 9.7520 3.9476 -0.7742 12 6 10.9064 4.5251 -1.4671 13 1 10.7149 4.5421 -2.5400 14 6 12.1292 3.6898 -1.1880 15 1 12.0541 2.8164 -0.5572 16 6 13.3441 4.0413 -1.7371 17 7 13.4357 5.1052 -2.5048 18 14 14.8600 3.0062 -1.3905 19 1 16.0302 3.5915 -2.0930 20 1 15.1202 2.9833 0.0713 21 1 14.6347 1.6207 -1.8750 22 6 11.1390 5.9526 -0.9680 23 9 12.2411 6.5043 -1.6300 24 9 10.0038 6.7281 -1.2271 25 9 11.3846 5.9309 0.4091 26 6 7.3802 2.7791 0.6156 27 7 6.1524 2.4693 0.9290 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8333 0.9767 -0.8908 34 1 3.8340 0.9765 0.8892 35 1 3.4229 3.4223 0.8889 36 1 3.4223 3.4216 -0.8911 37 1 5.6401 4.2991 -1.7361 38 1 9.8841 3.4028 0.0174 39 1 14.2905 5.3526 -2.8907 40 1 8.2681 2.4694 1.1466 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928800326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:28 Heat of formation + Delta-G solvation = -143.787624 kcal Electronic energy + Delta-G solvation = -28893.452169 eV Core-core repulsion = 24103.073501 eV Total energy + Delta-G solvation = -4790.378668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.30034 -45.95365 -45.56829 -41.34529 -38.66384 -38.35860 -34.59974 -34.27502 -32.53162 -31.71198 -30.37490 -29.16764 -27.78460 -24.56535 -23.87786 -23.26112 -22.88289 -21.13491 -20.63633 -19.60679 -18.14632 -17.30104 -16.86643 -16.79242 -16.67308 -16.56050 -15.88632 -15.63845 -15.32288 -14.93283 -14.75863 -14.35031 -14.25896 -14.12193 -13.50161 -13.07720 -12.90031 -12.87286 -12.77979 -12.60517 -12.45713 -12.35197 -12.26353 -12.21737 -11.93255 -11.77280 -11.64246 -11.60170 -11.16181 -10.98021 -10.84510 -10.76176 -10.37755 -10.08518 -9.65046 -9.63735 -9.24822 -8.70444 -8.65318 -8.17494 -6.21243 -4.45045 1.59622 2.06998 2.31014 3.21593 3.26484 3.27958 3.28487 3.88291 3.95938 4.22382 4.31155 4.46710 4.59725 4.62781 4.75698 4.78045 4.81134 4.86631 4.93415 4.95862 5.16714 5.19228 5.31153 5.39426 5.45404 5.52600 5.66692 5.80174 5.91789 5.94908 6.27082 6.41785 6.63180 6.77265 6.99157 7.22981 7.48168 7.53175 7.65666 8.39699 8.52804 8.96493 9.22762 10.70313 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.022720 B = 0.002372 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.085447 B =11799.901276 C =12449.449417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.389 6.389 4 C 0.053 3.947 5 C 0.137 3.863 6 N -0.367 5.367 7 C 0.125 3.875 8 C -0.277 4.277 9 C 0.584 3.416 10 O -0.545 6.545 11 N -0.707 5.707 12 C 0.247 3.753 13 H 0.086 0.914 14 C -0.552 4.552 15 H 0.077 0.923 16 C 0.064 3.936 17 N -0.840 5.840 18 Si 0.915 3.085 19 H -0.284 1.284 20 H -0.273 1.273 21 H -0.273 1.273 22 C 0.417 3.583 23 F -0.137 7.137 24 F -0.217 7.217 25 F -0.209 7.209 26 C 0.086 3.914 27 N -0.302 5.302 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.189 0.811 38 H 0.397 0.603 39 H 0.268 0.732 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.813 -8.011 5.069 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.308 6.308 4 C -0.025 4.025 5 C 0.015 3.985 6 N -0.148 5.148 7 C -0.025 4.025 8 C -0.292 4.292 9 C 0.371 3.629 10 O -0.423 6.423 11 N -0.355 5.355 12 C 0.141 3.859 13 H 0.103 0.897 14 C -0.589 4.589 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.741 3.259 19 H -0.209 1.209 20 H -0.198 1.198 21 H -0.198 1.198 22 C 0.361 3.639 23 F -0.118 7.118 24 F -0.199 7.199 25 F -0.191 7.191 26 C -0.102 4.102 27 N -0.122 5.122 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.206 0.794 38 H 0.231 0.769 39 H 0.079 0.921 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -19.816 -7.848 5.049 21.903 hybrid contribution 1.653 -0.200 0.128 1.669 sum -18.163 -8.047 5.177 20.530 Atomic orbital electron populations 1.21755 0.93432 1.02449 1.03250 1.22495 0.95664 0.83064 1.00475 1.87780 1.20115 1.27309 1.95629 1.22606 0.81709 0.96036 1.02113 1.21428 0.74312 0.97169 1.05547 1.48250 1.06380 1.39025 1.21128 1.22969 0.90817 0.94509 0.94183 1.20476 0.93780 1.12052 1.02887 1.17271 0.82283 0.79817 0.83573 1.90766 1.85788 1.39572 1.26223 1.45845 1.05376 1.52752 1.31555 1.19704 0.84974 0.85660 0.95530 0.89659 1.20839 0.91408 1.12474 1.34132 0.90473 1.25087 0.99606 0.95027 0.94722 1.70395 1.26320 1.21870 1.28701 0.86275 0.80858 0.79993 0.78729 1.20930 1.19822 1.19808 1.23137 0.73934 0.92135 0.74739 1.93403 1.51805 1.87358 1.79281 1.93069 1.53722 1.79235 1.93903 1.92987 1.94513 1.97216 1.34414 1.24153 0.95690 0.95347 0.95012 1.77107 1.00325 1.21289 1.13484 0.90910 0.91741 0.91735 0.93146 0.93079 0.92557 0.91493 0.88527 0.87409 0.79437 0.76903 0.92090 0.79104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.16 0.38 -0.42 16 2 C 0.06 0.40 6.66 37.16 0.25 0.65 16 3 O -0.39 -3.40 10.34 -35.23 -0.36 -3.77 16 4 C 0.05 0.45 6.11 37.16 0.23 0.68 16 5 C 0.14 1.15 6.86 -4.04 -0.03 1.13 16 6 N -0.37 -4.31 3.65 -60.81 -0.22 -4.53 16 7 C 0.13 1.64 11.25 -16.56 -0.19 1.46 16 8 C -0.28 -4.37 6.13 -105.06 -0.64 -5.01 16 9 C 0.58 11.69 7.35 -12.52 -0.09 11.60 16 10 O -0.55 -12.78 15.47 5.28 0.08 -12.69 16 11 N -0.71 -14.46 4.98 -56.01 -0.28 -14.74 16 12 C 0.25 6.11 2.21 -69.09 -0.15 5.96 16 13 H 0.09 2.36 7.58 -51.93 -0.39 1.97 16 14 C -0.55 -13.94 8.47 -34.44 -0.29 -14.23 16 15 H 0.08 1.82 7.74 -52.49 -0.41 1.42 16 16 C 0.06 1.67 5.20 -17.82 -0.09 1.57 16 17 N -0.84 -22.95 9.50 55.43 0.53 -22.42 16 18 Si 0.91 19.99 29.54 -169.99 -5.02 14.97 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 22 C 0.42 10.72 2.81 37.16 0.10 10.82 16 23 F -0.14 -3.81 12.91 2.25 0.03 -3.78 16 24 F -0.22 -5.57 15.67 2.25 0.04 -5.53 16 25 F -0.21 -5.19 16.94 2.25 0.04 -5.15 16 26 C 0.09 1.17 11.50 -16.98 -0.20 0.97 16 27 N -0.30 -4.05 12.33 30.86 0.38 -3.67 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.11 0.69 8.06 -51.93 -0.42 0.27 16 37 H 0.19 2.06 8.06 -52.48 -0.42 1.64 16 38 H 0.40 6.93 7.49 -40.82 -0.31 6.62 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 40 H 0.19 2.09 7.50 -52.49 -0.39 1.70 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -32.17 357.36 -4.99 -37.16 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.86 Total: 3.59 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -0.72 Total: 15.18 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.41 Total: -45.36 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.28 Total: -16.46 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 0.10 Total: -14.46 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.17 -4.99 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.627 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds