Wall clock time and date at job start Tue Mar 31 2020 18:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42905 * 109.46892 * 2 1 4 4 C 1.42899 * 113.99490 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46922 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47452 * 179.97438 * 5 4 3 7 7 C 1.34259 * 125.75446 * 124.99761 * 6 5 4 8 8 C 1.38044 * 107.41878 * 180.02562 * 7 6 5 9 9 C 1.47431 * 126.41606 * 179.97438 * 8 7 6 10 10 O 1.21601 * 120.00003 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99891 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00015 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46733 * 325.00143 * 12 11 9 14 14 C 1.50694 * 109.47115 * 204.99781 * 12 11 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.53000 * 109.47145 * 84.99707 * 12 11 9 23 23 F 1.39903 * 109.47440 * 180.02562 * 22 12 11 24 24 F 1.39899 * 109.47255 * 300.00046 * 22 12 11 25 25 F 1.39900 * 109.47102 * 59.99912 * 22 12 11 26 26 C 1.41291 * 107.17000 * 0.24698 * 8 7 6 27 27 N 1.30449 * 108.02113 * 359.58424 * 26 8 7 28 28 H 1.09000 * 109.47056 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46667 * 299.99994 * 1 2 3 30 30 H 1.08999 * 109.47355 * 59.99939 * 1 2 3 31 31 H 1.08996 * 109.46942 * 240.00051 * 2 1 3 32 32 H 1.08999 * 109.47355 * 120.00061 * 2 1 3 33 33 H 1.09000 * 109.47637 * 60.00168 * 4 3 2 34 34 H 1.09004 * 109.47200 * 299.99312 * 4 3 2 35 35 H 1.09010 * 109.47229 * 59.99568 * 5 4 3 36 36 H 1.08999 * 109.47149 * 299.99928 * 5 4 3 37 37 H 1.08004 * 126.29070 * 359.97438 * 7 6 5 38 38 H 0.97005 * 120.00104 * 359.97438 * 11 9 8 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.07997 * 125.99244 * 179.73595 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 7 5.2858 3.0541 -0.0012 7 6 6.0185 3.7387 -0.8939 8 6 7.3445 3.5936 -0.5384 9 6 8.5062 4.1743 -1.2360 10 8 8.3405 4.8577 -2.2281 11 7 9.7520 3.9476 -0.7742 12 6 10.9064 4.5251 -1.4671 13 1 10.7149 4.5421 -2.5400 14 6 12.1292 3.6898 -1.1880 15 1 12.0541 2.8164 -0.5572 16 6 13.3441 4.0413 -1.7371 17 7 13.4357 5.1052 -2.5048 18 14 14.8600 3.0062 -1.3905 19 1 16.0302 3.5915 -2.0930 20 1 15.1202 2.9833 0.0713 21 1 14.6347 1.6207 -1.8750 22 6 11.1390 5.9526 -0.9680 23 9 12.2411 6.5043 -1.6300 24 9 10.0038 6.7281 -1.2271 25 9 11.3846 5.9309 0.4091 26 6 7.3802 2.7791 0.6156 27 7 6.1524 2.4693 0.9290 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8333 0.9767 -0.8908 34 1 3.8340 0.9765 0.8892 35 1 3.4229 3.4223 0.8889 36 1 3.4223 3.4216 -0.8911 37 1 5.6401 4.2991 -1.7361 38 1 9.8841 3.4028 0.0174 39 1 14.2905 5.3526 -2.8907 40 1 8.2681 2.4694 1.1466 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928800326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:28 Heat of formation + Delta-G solvation = -165.489170 kcal Electronic energy + Delta-G solvation = -28894.393219 eV Core-core repulsion = 24103.073501 eV Total energy + Delta-G solvation = -4791.319718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.37303 -48.00783 -47.68454 -42.40998 -40.11543 -39.13756 -36.42643 -35.14306 -34.35990 -32.33376 -31.57389 -30.46310 -29.09020 -26.55858 -24.85852 -24.22464 -23.72560 -22.81989 -21.64337 -21.12222 -19.55080 -18.81484 -18.71999 -18.55295 -18.01431 -17.51038 -17.36980 -16.83172 -16.58434 -16.45412 -15.95013 -15.55320 -15.45575 -14.97418 -14.93394 -14.85590 -14.67460 -14.43431 -14.35156 -14.23642 -14.01351 -13.88885 -13.74021 -13.30172 -13.28505 -12.99945 -12.92745 -12.73321 -12.58020 -12.32122 -12.18822 -12.15346 -11.92312 -11.56325 -10.85445 -10.69462 -10.64220 -10.61794 -10.09049 -9.67449 -8.17654 -6.48085 0.49992 1.13520 1.19266 1.49499 1.51896 1.59984 2.28305 2.37863 2.52110 2.63697 2.66490 2.98186 3.47542 3.79234 3.80914 3.84202 3.88118 3.92264 4.11040 4.13637 4.20413 4.24325 4.28287 4.36401 4.46869 4.59642 4.64945 4.73963 4.85904 5.00335 5.01689 5.26213 5.36985 5.47440 5.60393 5.68878 5.77783 6.07978 6.46155 6.56451 6.82095 7.20848 7.43135 8.74849 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.022720 B = 0.002372 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.085447 B =11799.901276 C =12449.449417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.401 6.401 4 C 0.059 3.941 5 C 0.131 3.869 6 N -0.356 5.356 7 C 0.141 3.859 8 C -0.309 4.309 9 C 0.584 3.416 10 O -0.587 6.587 11 N -0.702 5.702 12 C 0.254 3.746 13 H 0.048 0.952 14 C -0.560 4.560 15 H 0.094 0.906 16 C 0.014 3.986 17 N -0.875 5.875 18 Si 0.983 3.017 19 H -0.286 1.286 20 H -0.265 1.265 21 H -0.262 1.262 22 C 0.414 3.586 23 F -0.151 7.151 24 F -0.219 7.219 25 F -0.203 7.203 26 C 0.091 3.909 27 N -0.312 5.312 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.209 0.791 38 H 0.412 0.588 39 H 0.268 0.732 40 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.837 -9.580 6.217 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.320 6.320 4 C -0.018 4.018 5 C 0.011 3.989 6 N -0.136 5.136 7 C -0.011 4.011 8 C -0.324 4.324 9 C 0.373 3.627 10 O -0.469 6.469 11 N -0.352 5.352 12 C 0.147 3.853 13 H 0.066 0.934 14 C -0.597 4.597 15 H 0.112 0.888 16 C -0.192 4.192 17 N -0.509 5.509 18 Si 0.806 3.194 19 H -0.212 1.212 20 H -0.190 1.190 21 H -0.187 1.187 22 C 0.357 3.643 23 F -0.132 7.132 24 F -0.201 7.201 25 F -0.185 7.185 26 C -0.096 4.096 27 N -0.132 5.132 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.151 0.849 37 H 0.225 0.775 38 H 0.249 0.751 39 H 0.078 0.922 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -20.889 -9.458 6.246 23.766 hybrid contribution 1.810 0.289 -0.224 1.847 sum -19.079 -9.169 6.022 22.008 Atomic orbital electron populations 1.21771 0.92423 1.03507 1.02956 1.22694 0.96539 0.82285 1.00969 1.87764 1.19951 1.28586 1.95675 1.22478 0.81841 0.95871 1.01621 1.21745 0.72246 0.97592 1.07321 1.48485 1.07437 1.37656 1.20001 1.23258 0.90185 0.93467 0.94198 1.20168 0.93134 1.14540 1.04512 1.17810 0.82884 0.78959 0.83031 1.90734 1.86349 1.41597 1.28197 1.45679 1.04692 1.52881 1.31911 1.19302 0.86574 0.85492 0.93943 0.93389 1.21200 0.91528 1.12845 1.34099 0.88845 1.26007 1.02740 0.96040 0.94366 1.70532 1.26911 1.23600 1.29830 0.85220 0.76841 0.78578 0.78740 1.21165 1.19025 1.18695 1.23319 0.73500 0.92554 0.74907 1.93375 1.52565 1.87633 1.79649 1.93059 1.53723 1.79372 1.93954 1.92984 1.94475 1.97211 1.33843 1.24450 0.96565 0.94423 0.94199 1.77105 1.00352 1.21672 1.14081 0.89223 0.92039 0.91983 0.92608 0.92650 0.92708 0.92358 0.87566 0.84910 0.77458 0.75133 0.92222 0.77062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.05 0.61 6.66 71.98 0.48 1.09 16 3 O -0.40 -6.29 10.34 -148.98 -1.54 -7.83 16 4 C 0.06 0.90 6.11 71.98 0.44 1.34 16 5 C 0.13 1.88 6.86 86.38 0.59 2.47 16 6 N -0.36 -7.57 3.65 -346.29 -1.26 -8.84 16 7 C 0.14 3.45 11.25 84.28 0.95 4.40 16 8 C -0.31 -9.40 6.13 -20.15 -0.12 -9.52 16 9 C 0.58 23.45 7.35 86.66 0.64 24.08 16 10 O -0.59 -28.12 15.47 -4.03 -0.06 -28.18 16 11 N -0.70 -28.70 4.98 -449.38 -2.24 -30.93 16 12 C 0.25 12.79 2.21 44.24 0.10 12.88 16 13 H 0.05 2.78 7.58 -2.39 -0.02 2.76 16 14 C -0.56 -28.13 8.47 25.60 0.22 -27.91 16 15 H 0.09 4.28 7.74 -2.91 -0.02 4.25 16 16 C 0.01 0.71 5.20 84.66 0.44 1.15 16 17 N -0.87 -48.54 9.50 21.45 0.20 -48.34 16 18 Si 0.98 40.39 29.54 68.60 2.03 42.42 16 19 H -0.29 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 22 C 0.41 21.59 2.81 71.98 0.20 21.79 16 23 F -0.15 -8.56 12.91 44.97 0.58 -7.98 16 24 F -0.22 -11.43 15.67 44.97 0.70 -10.73 16 25 F -0.20 -10.03 16.94 44.97 0.76 -9.27 16 26 C 0.09 2.33 11.50 85.65 0.99 3.31 16 27 N -0.31 -7.74 12.33 -56.28 -0.69 -8.43 16 28 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.13 1.28 8.06 -2.39 -0.02 1.26 16 37 H 0.21 4.13 8.06 -2.91 -0.02 4.11 16 38 H 0.41 14.01 7.49 -92.70 -0.69 13.31 16 39 H 0.27 14.15 8.31 -92.71 -0.77 13.37 16 40 H 0.21 4.19 7.50 -2.91 -0.02 4.17 16 Total: -1.00 -69.45 357.36 4.53 -64.92 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.39 Total: 18.72 kcal Atomic # 6 Polarization: 28.82 SS G_CDS: 5.66 Total: 34.47 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -3.99 Total: -96.54 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.60 Total: -36.01 kcal Atomic # 9 Polarization: -30.03 SS G_CDS: 2.05 Total: -27.98 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -69.45 4.53 -64.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.565 kcal (2) G-P(sol) polarization free energy of solvation -69.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds