Wall clock time and date at job start Tue Mar 31 2020 19:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34707 * 117.00000 * 2 1 4 4 O 1.21478 * 119.99686 * 359.97438 * 3 2 1 5 5 C 1.47744 * 120.00275 * 179.97438 * 3 2 1 6 6 C 1.39729 * 120.06308 * 359.97070 * 5 3 2 7 7 C 1.38268 * 120.11354 * 180.02562 * 6 5 3 8 8 F 1.35092 * 119.87618 * 180.02562 * 7 6 5 9 9 C 1.38338 * 120.24472 * 359.72540 * 7 6 5 10 10 C 1.39643 * 120.12808 * 0.55715 * 9 7 6 11 11 C 1.47865 * 120.05586 * 179.72192 * 10 9 7 12 12 O 1.21548 * 119.99622 * 202.74860 * 11 10 9 13 13 N 1.34772 * 120.00462 * 22.74126 * 11 10 9 14 14 C 1.46497 * 120.00563 * 181.81846 * 13 11 10 15 15 C 1.50701 * 109.47250 * 270.00344 * 14 13 11 16 16 H 1.07997 * 119.99910 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00094 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00175 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47329 * 90.00028 * 19 17 15 21 21 H 1.48503 * 109.47470 * 210.00404 * 19 17 15 22 22 H 1.48505 * 109.47052 * 330.00368 * 19 17 15 23 23 C 1.46509 * 119.99511 * 1.82311 * 13 11 10 24 24 C 1.52997 * 109.46846 * 259.59048 * 23 13 11 25 25 C 1.52997 * 117.50017 * 243.74503 * 24 23 13 26 26 C 1.53007 * 117.49689 * 175.08608 * 24 23 13 27 27 C 1.39319 * 119.88561 * 359.44481 * 10 9 7 28 28 H 1.09001 * 109.46870 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47373 * 300.00119 * 1 2 3 30 30 H 1.08998 * 109.46919 * 60.00761 * 1 2 3 31 31 H 1.07997 * 119.94477 * 0.02562 * 6 5 3 32 32 H 1.08000 * 119.93479 * 180.29611 * 9 7 6 33 33 H 1.08999 * 109.46702 * 30.00299 * 14 13 11 34 34 H 1.09005 * 109.47257 * 150.00074 * 14 13 11 35 35 H 0.96998 * 120.00093 * 179.97438 * 18 17 15 36 36 H 1.08996 * 109.47240 * 19.59267 * 23 13 11 37 37 H 1.08999 * 109.46605 * 139.59533 * 23 13 11 38 38 H 1.09003 * 115.55247 * 29.41993 * 24 23 13 39 39 H 1.08997 * 117.49997 * 0.02562 * 25 24 23 40 40 H 1.09007 * 117.49796 * 145.02180 * 25 24 23 41 41 H 1.08998 * 117.50219 * 214.98118 * 26 24 23 42 42 H 1.08997 * 117.49722 * 0.02562 * 26 24 23 43 43 H 1.07995 * 120.12422 * 180.25750 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3013 0.1067 0.0017 7 6 5.6822 0.1779 0.0028 8 9 6.4146 -0.9573 0.0034 9 6 6.3165 1.4072 -0.0030 10 6 5.5646 2.5839 0.0018 11 6 6.2443 3.8971 0.0018 12 8 5.6630 4.8823 0.4127 13 7 7.5085 4.0017 -0.4536 14 6 8.1959 5.2948 -0.4167 15 6 7.9389 6.0373 -1.7027 16 1 7.3246 5.5907 -2.4706 17 6 8.4872 7.2871 -1.8986 18 7 9.2348 7.8311 -0.9633 19 14 8.1681 8.2077 -3.4923 20 1 6.9465 9.0394 -3.3475 21 1 9.3285 9.0819 -3.7999 22 1 7.9757 7.2336 -4.5966 23 6 8.1952 2.8220 -0.9858 24 6 9.1379 2.2573 0.0788 25 6 10.6372 2.2720 -0.2257 26 6 9.8653 0.9503 -0.2434 27 6 4.1730 2.5185 0.0007 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.8112 -0.8557 0.0018 32 1 7.3954 1.4570 -0.0070 33 1 7.8217 5.8813 0.4224 34 1 9.2674 5.1335 -0.2981 35 1 9.6208 8.7102 -1.1013 36 1 7.4595 2.0652 -1.2580 37 1 8.7703 3.1035 -1.8678 38 1 8.8325 2.4217 1.1122 39 1 10.9520 2.6845 -1.1842 40 1 11.3182 2.4459 0.6075 41 1 10.0388 0.2551 0.5780 42 1 9.6725 0.4931 -1.2139 43 1 3.5877 3.4261 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931937464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:50 Heat of formation + Delta-G solvation = -76.235150 kcal Electronic energy + Delta-G solvation = -28876.533594 eV Core-core repulsion = 24611.021000 eV Total energy + Delta-G solvation = -4265.512594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.08533 -40.90669 -40.11440 -37.98689 -37.42567 -36.63167 -34.59833 -32.92504 -31.83935 -30.76463 -28.43504 -27.69170 -26.65737 -24.49115 -24.13907 -22.35799 -22.19916 -21.37080 -20.85072 -19.47206 -17.96915 -17.59876 -17.02985 -16.63418 -16.52661 -16.47870 -16.25866 -15.84940 -15.78654 -15.06691 -14.91548 -14.59183 -14.25732 -13.89957 -13.85639 -13.64744 -13.36254 -12.95711 -12.74013 -12.46300 -12.36579 -12.05964 -11.99373 -11.58875 -11.49842 -11.32851 -11.10926 -11.08630 -10.92823 -10.77128 -10.66638 -10.38571 -10.17296 -10.00486 -9.68280 -9.36481 -9.07551 -8.99732 -8.46160 -7.83578 -6.07808 -4.12588 0.24928 0.75433 2.12119 2.32814 3.06724 3.30140 3.36538 3.37809 3.56897 3.69528 3.82901 3.93754 4.33226 4.42128 4.51453 4.74912 4.77520 4.82892 4.83494 4.90785 4.91374 5.04295 5.08660 5.20509 5.27023 5.31076 5.47390 5.54684 5.61561 5.68309 5.70316 5.88604 5.89732 5.96789 6.03158 6.11680 6.20932 6.33926 6.46941 6.98006 7.34343 7.42069 7.45533 7.87763 8.17239 8.21811 8.76408 8.94098 9.52435 11.00398 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010791 B = 0.003731 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.172143 B = 7503.820242 C = 9552.889983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.512 3.488 4 O -0.493 6.493 5 C -0.110 4.110 6 C -0.086 4.086 7 C 0.080 3.920 8 F -0.131 7.131 9 C -0.123 4.123 10 C -0.101 4.101 11 C 0.545 3.455 12 O -0.522 6.522 13 N -0.580 5.580 14 C 0.248 3.752 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.111 3.889 24 C -0.184 4.184 25 C -0.162 4.162 26 C -0.181 4.181 27 C -0.010 4.010 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.152 0.848 32 H 0.188 0.812 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.264 0.736 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.106 -20.951 1.923 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.357 3.643 4 O -0.381 6.381 5 C -0.112 4.112 6 C -0.105 4.105 7 C 0.060 3.940 8 F -0.110 7.110 9 C -0.142 4.142 10 C -0.105 4.105 11 C 0.331 3.669 12 O -0.400 6.400 13 N -0.310 5.310 14 C 0.129 3.871 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.013 4.013 24 C -0.204 4.204 25 C -0.199 4.199 26 C -0.219 4.219 27 C -0.030 4.030 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.170 0.830 32 H 0.204 0.796 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.487 -19.955 2.175 21.424 hybrid contribution -0.166 0.373 -0.866 0.957 sum -7.653 -19.582 1.310 21.065 Atomic orbital electron populations 1.23313 0.75643 1.03839 1.02900 1.86524 1.23810 1.32433 1.84439 1.20964 0.88678 0.81640 0.73065 1.90891 1.66422 1.35884 1.44909 1.18705 0.89317 0.93779 1.09370 1.21507 0.92119 0.99571 0.97279 1.17355 0.88871 0.82377 1.05364 1.91534 1.76999 1.48354 1.94112 1.23118 1.04640 0.90332 0.96076 1.20098 0.93458 0.94307 1.02597 1.17920 0.82285 0.86910 0.79765 1.90801 1.64328 1.37609 1.47229 1.48122 1.12420 1.11455 1.58962 1.19366 0.92025 0.77315 0.98364 1.21405 1.31432 1.02099 1.01817 0.92372 1.24912 0.94943 0.97088 0.96994 1.69927 1.33198 1.16796 1.33291 0.86504 0.77865 0.79782 0.83316 1.20487 1.21139 1.19911 1.21881 0.95395 0.88454 0.95550 1.22860 0.95238 1.01278 1.00983 1.23000 0.93479 0.99778 1.03651 1.23034 1.04915 0.90716 1.03200 1.21457 0.93416 0.97531 0.90558 0.87866 0.91636 0.91624 0.83037 0.79584 0.93673 0.94297 0.92665 0.88950 0.89564 0.87316 0.88143 0.88779 0.88661 0.88517 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.64 9.81 -40.51 -0.40 -4.04 16 3 C 0.51 6.59 7.90 34.62 0.27 6.87 16 4 O -0.49 -7.70 16.13 -19.25 -0.31 -8.01 16 5 C -0.11 -1.41 5.87 -105.04 -0.62 -2.03 16 6 C -0.09 -0.92 9.59 -39.01 -0.37 -1.30 16 7 C 0.08 0.91 7.28 -39.53 -0.29 0.63 16 8 F -0.13 -1.44 17.26 2.25 0.04 -1.40 16 9 C -0.12 -1.61 7.50 -39.02 -0.29 -1.91 16 10 C -0.10 -1.62 5.61 -105.03 -0.59 -2.21 16 11 C 0.55 11.28 7.52 -12.32 -0.09 11.18 16 12 O -0.52 -13.02 16.16 5.32 0.09 -12.93 16 13 N -0.58 -11.84 2.47 -176.17 -0.44 -12.27 16 14 C 0.25 6.25 5.14 -5.19 -0.03 6.22 16 15 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16 16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 19 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 23 C 0.11 1.72 5.12 -4.04 -0.02 1.70 16 24 C -0.18 -2.43 4.03 -90.62 -0.36 -2.80 16 25 C -0.16 -1.98 10.18 -26.69 -0.27 -2.25 16 26 C -0.18 -1.86 9.99 -26.69 -0.27 -2.13 16 27 C -0.01 -0.16 9.13 -38.77 -0.35 -0.51 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.15 1.27 7.60 -52.49 -0.40 0.87 16 32 H 0.19 2.32 2.37 -52.49 -0.12 2.19 16 33 H 0.05 1.29 7.45 -51.93 -0.39 0.90 16 34 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.09 1.25 4.24 -51.94 -0.22 1.03 16 37 H 0.09 1.39 7.87 -51.93 -0.41 0.98 16 38 H 0.11 1.50 8.13 -51.93 -0.42 1.08 16 39 H 0.10 1.27 8.03 -51.93 -0.42 0.85 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.16 2.60 7.40 -52.49 -0.39 2.22 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -32.91 372.36 -7.59 -40.51 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.27 Total: 1.75 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.64 Total: -0.50 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.30 Total: -37.61 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.62 Total: -24.98 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.91 -7.59 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931937464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.728 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds