Wall clock time and date at job start Tue Mar 31 2020 19:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34707 * 117.00000 * 2 1 4 4 O 1.21478 * 119.99686 * 359.97438 * 3 2 1 5 5 C 1.47744 * 120.00275 * 179.97438 * 3 2 1 6 6 C 1.39729 * 120.06308 * 359.97070 * 5 3 2 7 7 C 1.38268 * 120.11354 * 180.02562 * 6 5 3 8 8 F 1.35092 * 119.87618 * 180.02562 * 7 6 5 9 9 C 1.38338 * 120.24472 * 359.72540 * 7 6 5 10 10 C 1.39643 * 120.12808 * 0.55715 * 9 7 6 11 11 C 1.47865 * 120.05586 * 179.72192 * 10 9 7 12 12 O 1.21548 * 119.99622 * 202.74860 * 11 10 9 13 13 N 1.34772 * 120.00462 * 22.74126 * 11 10 9 14 14 C 1.46497 * 120.00563 * 181.81846 * 13 11 10 15 15 C 1.50701 * 109.47250 * 270.00344 * 14 13 11 16 16 H 1.07997 * 119.99910 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00094 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00175 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47329 * 90.00028 * 19 17 15 21 21 H 1.48503 * 109.47470 * 210.00404 * 19 17 15 22 22 H 1.48505 * 109.47052 * 330.00368 * 19 17 15 23 23 C 1.46509 * 119.99511 * 1.82311 * 13 11 10 24 24 C 1.52997 * 109.46846 * 259.59048 * 23 13 11 25 25 C 1.52997 * 117.50017 * 243.74503 * 24 23 13 26 26 C 1.53007 * 117.49689 * 175.08608 * 24 23 13 27 27 C 1.39319 * 119.88561 * 359.44481 * 10 9 7 28 28 H 1.09001 * 109.46870 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47373 * 300.00119 * 1 2 3 30 30 H 1.08998 * 109.46919 * 60.00761 * 1 2 3 31 31 H 1.07997 * 119.94477 * 0.02562 * 6 5 3 32 32 H 1.08000 * 119.93479 * 180.29611 * 9 7 6 33 33 H 1.08999 * 109.46702 * 30.00299 * 14 13 11 34 34 H 1.09005 * 109.47257 * 150.00074 * 14 13 11 35 35 H 0.96998 * 120.00093 * 179.97438 * 18 17 15 36 36 H 1.08996 * 109.47240 * 19.59267 * 23 13 11 37 37 H 1.08999 * 109.46605 * 139.59533 * 23 13 11 38 38 H 1.09003 * 115.55247 * 29.41993 * 24 23 13 39 39 H 1.08997 * 117.49997 * 0.02562 * 25 24 23 40 40 H 1.09007 * 117.49796 * 145.02180 * 25 24 23 41 41 H 1.08998 * 117.50219 * 214.98118 * 26 24 23 42 42 H 1.08997 * 117.49722 * 0.02562 * 26 24 23 43 43 H 1.07995 * 120.12422 * 180.25750 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3013 0.1067 0.0017 7 6 5.6822 0.1779 0.0028 8 9 6.4146 -0.9573 0.0034 9 6 6.3165 1.4072 -0.0030 10 6 5.5646 2.5839 0.0018 11 6 6.2443 3.8971 0.0018 12 8 5.6630 4.8823 0.4127 13 7 7.5085 4.0017 -0.4536 14 6 8.1959 5.2948 -0.4167 15 6 7.9389 6.0373 -1.7027 16 1 7.3246 5.5907 -2.4706 17 6 8.4872 7.2871 -1.8986 18 7 9.2348 7.8311 -0.9633 19 14 8.1681 8.2077 -3.4923 20 1 6.9465 9.0394 -3.3475 21 1 9.3285 9.0819 -3.7999 22 1 7.9757 7.2336 -4.5966 23 6 8.1952 2.8220 -0.9858 24 6 9.1379 2.2573 0.0788 25 6 10.6372 2.2720 -0.2257 26 6 9.8653 0.9503 -0.2434 27 6 4.1730 2.5185 0.0007 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.8112 -0.8557 0.0018 32 1 7.3954 1.4570 -0.0070 33 1 7.8217 5.8813 0.4224 34 1 9.2674 5.1335 -0.2981 35 1 9.6208 8.7102 -1.1013 36 1 7.4595 2.0652 -1.2580 37 1 8.7703 3.1035 -1.8678 38 1 8.8325 2.4217 1.1122 39 1 10.9520 2.6845 -1.1842 40 1 11.3182 2.4459 0.6075 41 1 10.0388 0.2551 0.5780 42 1 9.6725 0.4931 -1.2139 43 1 3.5877 3.4261 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931937464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:49 Heat of formation + Delta-G solvation = -94.826909 kcal Electronic energy + Delta-G solvation = -28877.339794 eV Core-core repulsion = 24611.021000 eV Total energy + Delta-G solvation = -4266.318794 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.00188 -42.03244 -41.35357 -39.17854 -38.71501 -37.59201 -36.22282 -34.81193 -33.20992 -31.87323 -29.92864 -28.68667 -28.14177 -25.86143 -25.46838 -23.80203 -23.22583 -22.40787 -21.98745 -20.76481 -19.21144 -18.68012 -18.61099 -18.17994 -17.57690 -17.52080 -17.42442 -16.95181 -16.80310 -16.65097 -16.20207 -16.04905 -15.82145 -15.07175 -14.77986 -14.64324 -14.52182 -14.38965 -14.31396 -13.81117 -13.38452 -13.33769 -13.19430 -13.01992 -12.96917 -12.70921 -12.62395 -12.38591 -12.26090 -12.16243 -11.87135 -11.86695 -11.75398 -11.32680 -11.03030 -10.90431 -10.65737 -10.31914 -10.05727 -9.58305 -8.24383 -6.38440 -0.80529 -0.37025 1.05839 1.35560 1.38885 1.42711 1.48230 1.77598 2.07636 2.38319 2.44285 2.79809 2.86328 3.05972 3.21051 3.48920 3.71351 3.73792 3.78834 3.83715 3.96745 4.09877 4.19474 4.31352 4.35001 4.35443 4.43760 4.46015 4.65363 4.72290 4.74966 4.85388 4.86756 4.87860 5.03054 5.07877 5.16548 5.20178 5.24163 5.33296 5.43868 5.50501 5.76181 6.02820 6.50700 6.54346 6.69695 7.14940 7.33804 8.83149 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010791 B = 0.003731 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.172143 B = 7503.820242 C = 9552.889983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.517 3.483 4 O -0.529 6.529 5 C -0.108 4.108 6 C -0.054 4.054 7 C 0.096 3.904 8 F -0.118 7.118 9 C -0.113 4.113 10 C -0.116 4.116 11 C 0.538 3.462 12 O -0.582 6.582 13 N -0.583 5.583 14 C 0.266 3.734 15 C -0.545 4.545 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.925 5.925 19 Si 0.964 3.036 20 H -0.282 1.282 21 H -0.273 1.273 22 H -0.262 1.262 23 C 0.109 3.891 24 C -0.205 4.205 25 C -0.176 4.176 26 C -0.142 4.142 27 C -0.021 4.021 28 H 0.142 0.858 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.189 0.811 32 H 0.195 0.805 33 H -0.001 1.001 34 H 0.033 0.967 35 H 0.268 0.732 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.350 -25.088 0.780 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.262 6.262 3 C 0.363 3.637 4 O -0.420 6.420 5 C -0.110 4.110 6 C -0.073 4.073 7 C 0.076 3.924 8 F -0.096 7.096 9 C -0.131 4.131 10 C -0.119 4.119 11 C 0.327 3.673 12 O -0.464 6.464 13 N -0.312 5.312 14 C 0.145 3.855 15 C -0.584 4.584 16 H 0.071 0.929 17 C -0.188 4.188 18 N -0.565 5.565 19 Si 0.789 3.211 20 H -0.208 1.208 21 H -0.198 1.198 22 H -0.186 1.186 23 C -0.013 4.013 24 C -0.224 4.224 25 C -0.213 4.213 26 C -0.179 4.179 27 C -0.040 4.040 28 H 0.160 0.840 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.206 0.794 32 H 0.211 0.789 33 H 0.017 0.983 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.708 -24.171 1.019 25.391 hybrid contribution -0.145 1.537 -0.463 1.612 sum -7.853 -22.634 0.556 23.964 Atomic orbital electron populations 1.23677 0.73719 1.06319 1.02774 1.86509 1.25570 1.30463 1.83621 1.20944 0.88577 0.81960 0.72232 1.90886 1.67120 1.37297 1.46685 1.18632 0.89711 0.93344 1.09289 1.21806 0.91645 1.00067 0.93800 1.17153 0.89028 0.81898 1.04290 1.91582 1.76778 1.47414 1.93872 1.23025 1.04785 0.89961 0.95363 1.19505 0.93560 0.92670 1.06185 1.18637 0.81985 0.88284 0.78386 1.90750 1.65657 1.40168 1.49811 1.48058 1.12718 1.11396 1.59006 1.18784 0.91626 0.79228 0.95819 1.21679 1.31377 1.02898 1.02429 0.92942 1.25795 0.94573 0.97921 1.00491 1.70039 1.33955 1.17275 1.35205 0.85464 0.77766 0.78537 0.79359 1.20817 1.19792 1.18617 1.22169 0.96088 0.87074 0.95939 1.22686 0.95359 1.04670 0.99665 1.23063 0.92768 1.02008 1.03444 1.23177 1.00571 0.89366 1.04792 1.21252 0.93032 0.98000 0.91758 0.84019 0.91835 0.91836 0.79366 0.78852 0.98279 0.94883 0.92341 0.86457 0.90390 0.88192 0.88965 0.88423 0.86419 0.86657 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.35 -6.05 9.81 -56.17 -0.55 -6.60 16 3 C 0.52 12.64 7.90 70.34 0.56 13.20 16 4 O -0.53 -16.70 16.13 19.91 0.32 -16.38 16 5 C -0.11 -2.60 5.87 -20.14 -0.12 -2.72 16 6 C -0.05 -0.95 9.59 22.64 0.22 -0.73 16 7 C 0.10 1.82 7.28 22.30 0.16 1.98 16 8 F -0.12 -1.97 17.26 44.97 0.78 -1.19 16 9 C -0.11 -2.74 7.50 22.63 0.17 -2.57 16 10 C -0.12 -3.78 5.61 -20.13 -0.11 -3.89 16 11 C 0.54 23.75 7.52 86.79 0.65 24.41 16 12 O -0.58 -31.66 16.16 -3.87 -0.06 -31.72 16 13 N -0.58 -25.15 2.47 -829.55 -2.05 -27.20 16 14 C 0.27 14.35 5.14 85.63 0.44 14.79 16 15 C -0.55 -31.60 9.39 25.60 0.24 -31.36 16 16 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 17 C 0.01 0.67 5.46 84.65 0.46 1.13 16 18 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 19 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 23 C 0.11 3.39 5.12 86.38 0.44 3.84 16 24 C -0.20 -5.23 4.03 -10.79 -0.04 -5.28 16 25 C -0.18 -4.12 10.18 30.62 0.31 -3.81 16 26 C -0.14 -2.44 9.99 30.62 0.31 -2.13 16 27 C -0.02 -0.66 9.13 22.80 0.21 -0.45 16 28 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.19 2.02 7.60 -2.91 -0.02 1.99 16 32 H 0.20 4.41 2.37 -2.91 -0.01 4.40 16 33 H 0.00 -0.06 7.45 -2.39 -0.02 -0.07 16 34 H 0.03 1.79 8.07 -2.38 -0.02 1.77 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.12 3.02 4.24 -2.40 -0.01 3.01 16 37 H 0.08 2.54 7.87 -2.39 -0.02 2.52 16 38 H 0.10 2.76 8.13 -2.39 -0.02 2.74 16 39 H 0.09 2.31 8.03 -2.39 -0.02 2.29 16 40 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.13 4.74 7.40 -2.91 -0.02 4.71 16 Total: -1.00 -77.26 372.36 6.89 -70.36 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.06 Total: 13.16 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 5.09 Total: 7.92 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.76 Total: -82.81 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -0.29 Total: -54.70 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.78 Total: -1.19 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -77.26 6.89 -70.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931937464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.462 kcal (2) G-P(sol) polarization free energy of solvation -77.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds