Wall clock time and date at job start Tue Mar 31 2020 19:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34703 * 117.00049 * 2 1 4 4 O 1.21465 * 120.00171 * 0.02562 * 3 2 1 5 5 C 1.47756 * 119.99595 * 180.02562 * 3 2 1 6 6 C 1.39726 * 120.06932 * 359.97438 * 5 3 2 7 7 C 1.38256 * 120.11500 * 179.97438 * 6 5 3 8 8 F 1.35097 * 119.87654 * 180.02562 * 7 6 5 9 9 C 1.38334 * 120.24883 * 0.02983 * 7 6 5 10 10 C 1.39643 * 120.12799 * 359.97438 * 9 7 6 11 11 C 1.47863 * 120.05934 * 179.97438 * 10 9 7 12 12 O 1.21553 * 120.00021 * 230.88052 * 11 10 9 13 13 N 1.34784 * 119.99936 * 50.87288 * 11 10 9 14 14 C 1.46924 * 120.62655 * 176.18296 * 13 11 10 15 15 C 1.53195 * 108.88830 * 233.51669 * 14 13 11 16 16 C 1.53070 * 109.29611 * 305.57653 * 15 14 13 17 17 C 1.50700 * 109.44221 * 181.23472 * 16 15 14 18 18 H 1.08000 * 120.00470 * 239.79661 * 17 16 15 19 19 C 1.37881 * 119.99718 * 59.80294 * 17 16 15 20 20 N 1.31513 * 120.00091 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00190 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47065 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47133 * 119.99521 * 21 19 17 24 24 H 1.48497 * 109.47167 * 239.99919 * 21 19 17 25 25 C 1.53040 * 109.65733 * 61.15788 * 16 15 14 26 26 C 1.46925 * 120.62760 * 356.16241 * 13 11 10 27 27 C 1.39320 * 119.88583 * 0.25382 * 10 9 7 28 28 H 1.09002 * 109.46974 * 300.00224 * 1 2 3 29 29 H 1.09008 * 109.47250 * 59.99799 * 1 2 3 30 30 H 1.08997 * 109.47632 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.93851 * 0.02562 * 6 5 3 32 32 H 1.08001 * 119.93616 * 180.02562 * 9 7 6 33 33 H 1.08997 * 109.59233 * 353.37438 * 14 13 11 34 34 H 1.09003 * 109.58679 * 113.66040 * 14 13 11 35 35 H 1.08998 * 109.49970 * 65.39279 * 15 14 13 36 36 H 1.09003 * 109.49248 * 185.49070 * 15 14 13 37 37 H 1.08998 * 109.34992 * 301.13531 * 16 15 14 38 38 H 0.96998 * 120.00344 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.50443 * 178.74800 * 25 16 15 40 40 H 1.09005 * 109.52696 * 58.66527 * 25 16 15 41 41 H 1.09005 * 109.58086 * 246.19270 * 26 13 11 42 42 H 1.08993 * 109.59086 * 6.48117 * 26 13 11 43 43 H 1.07993 * 120.12624 * 179.72229 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2189 0.0005 5 6 3.5391 1.2774 -0.0006 6 6 4.3014 0.1064 -0.0006 7 6 5.6821 0.1776 -0.0016 8 9 6.4145 -0.9577 -0.0022 9 6 6.3166 1.4069 -0.0021 10 6 5.5648 2.5836 -0.0020 11 6 6.2445 3.8968 -0.0019 12 8 5.9340 4.7418 0.8148 13 7 7.2084 4.1567 -0.9074 14 6 7.8345 5.4842 -0.9740 15 6 7.7345 6.0083 -2.4101 16 6 8.3367 4.9772 -3.3678 17 6 8.2675 5.5026 -4.7786 18 1 7.7191 4.9566 -5.5320 19 6 8.9043 6.6805 -5.1076 20 7 9.5717 7.3456 -4.1902 21 14 8.8192 7.3315 -6.8564 22 1 8.0136 6.4043 -7.6910 23 1 8.1850 8.6742 -6.8544 24 1 10.1917 7.4330 -7.4141 25 6 7.5523 3.6666 -3.2730 26 6 7.6533 3.1178 -1.8462 27 6 4.1731 2.5183 0.0039 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.8111 -0.8559 -0.0006 32 1 7.3954 1.4566 -0.0034 33 1 7.3175 6.1664 -0.2993 34 1 8.8827 5.4088 -0.6847 35 1 6.6875 6.1715 -2.6657 36 1 8.2806 6.9479 -2.4932 37 1 9.3773 4.7980 -3.0977 38 1 10.0195 8.1744 -4.4215 39 1 7.9693 2.9415 -3.9719 40 1 6.5063 3.8493 -3.5192 41 1 8.6875 2.8490 -1.6305 42 1 7.0183 2.2377 -1.7452 43 1 3.5879 3.4260 0.0085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935319527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:42 Heat of formation + Delta-G solvation = -136.458071 kcal Electronic energy + Delta-G solvation = -28669.108017 eV Core-core repulsion = 24400.983960 eV Total energy + Delta-G solvation = -4268.124056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.24226 -41.01899 -40.22351 -38.39444 -36.89627 -36.75780 -33.75163 -32.41056 -31.13931 -30.99338 -30.09459 -28.16319 -26.47772 -24.91153 -24.18684 -22.94157 -22.15413 -21.54578 -20.29896 -19.03961 -18.00530 -17.76261 -17.10153 -16.73942 -16.61744 -16.41853 -16.26174 -16.01844 -15.80348 -15.46694 -14.72556 -14.58827 -14.09016 -13.77057 -13.68525 -13.57027 -13.25867 -12.86251 -12.77080 -12.62603 -12.53481 -12.28276 -12.23456 -12.15950 -11.78761 -11.24147 -11.17954 -10.99491 -10.97475 -10.67522 -10.49664 -10.16767 -9.84614 -9.65590 -9.59269 -9.22422 -9.12815 -8.98476 -8.42669 -8.14946 -6.06418 -4.13055 0.08569 0.58842 1.98421 2.19624 2.73182 3.11057 3.25505 3.33380 3.34358 3.37573 3.72998 4.15059 4.34622 4.38199 4.56034 4.62619 4.65547 4.75335 4.83864 5.01074 5.18295 5.23641 5.28127 5.35110 5.48242 5.63429 5.69077 5.74413 5.82150 5.92673 5.98510 6.15876 6.25565 6.32253 6.35519 6.53426 6.70517 6.87536 7.10628 7.25142 7.33058 7.64259 7.69191 7.86392 8.00287 8.28134 8.35383 8.90472 9.52551 10.99128 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014502 B = 0.002820 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.259899 B = 9925.447041 C =10336.924113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.513 3.487 4 O -0.493 6.493 5 C -0.103 4.103 6 C -0.084 4.084 7 C 0.087 3.913 8 F -0.129 7.129 9 C -0.089 4.089 10 C -0.094 4.094 11 C 0.553 3.447 12 O -0.538 6.538 13 N -0.588 5.588 14 C 0.109 3.891 15 C -0.124 4.124 16 C 0.048 3.952 17 C -0.513 4.513 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.124 4.124 26 C 0.094 3.906 27 C -0.017 4.017 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.106 0.894 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 -16.875 9.277 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.357 3.643 4 O -0.381 6.381 5 C -0.104 4.104 6 C -0.103 4.103 7 C 0.068 3.932 8 F -0.108 7.108 9 C -0.108 4.108 10 C -0.098 4.098 11 C 0.340 3.660 12 O -0.416 6.416 13 N -0.319 5.319 14 C -0.012 4.012 15 C -0.162 4.162 16 C 0.030 3.970 17 C -0.551 4.551 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.162 4.162 26 C -0.028 4.028 27 C -0.036 4.036 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.124 0.876 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.313 -15.992 9.706 21.862 hybrid contribution -0.024 0.182 -1.064 1.079 sum -11.336 -15.810 8.643 21.288 Atomic orbital electron populations 1.23336 0.75437 1.03975 1.02947 1.86521 1.23967 1.32283 1.84313 1.20915 0.88599 0.81726 0.73093 1.90888 1.66421 1.35906 1.44879 1.18704 0.89488 0.93665 1.08540 1.21512 0.91971 0.99769 0.97024 1.17261 0.88963 0.82191 1.04808 1.91559 1.76935 1.48279 1.94011 1.21659 1.01929 0.90204 0.97012 1.19769 0.93506 0.93862 1.02637 1.18019 0.80043 0.86161 0.81795 1.90795 1.64975 1.47282 1.38577 1.48222 1.36522 1.14473 1.32656 1.21992 0.96693 0.81608 1.00906 1.22051 1.00575 1.03328 0.90262 1.18653 0.94386 0.89035 0.94962 1.21207 1.32198 1.07081 0.94637 0.92631 1.24965 0.95081 0.96795 0.97134 1.69839 1.33868 1.16466 1.32732 0.86558 0.77739 0.78867 0.84970 1.19832 1.21028 1.21043 1.22018 1.01441 1.00250 0.92502 1.22206 0.99548 0.89893 0.91162 1.21314 0.92929 0.97627 0.91711 0.91596 0.91538 0.87756 0.82725 0.82966 0.90333 0.91823 0.94193 0.87552 0.95387 0.92949 0.91850 0.92730 0.91264 0.90736 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.26 9.81 -40.50 -0.40 -3.66 16 3 C 0.51 5.90 7.90 34.62 0.27 6.17 16 4 O -0.49 -6.99 16.13 -19.24 -0.31 -7.30 16 5 C -0.10 -1.14 5.87 -105.04 -0.62 -1.76 16 6 C -0.08 -0.78 9.59 -39.02 -0.37 -1.15 16 7 C 0.09 0.87 7.28 -39.54 -0.29 0.58 16 8 F -0.13 -1.30 17.26 2.25 0.04 -1.26 16 9 C -0.09 -0.98 7.34 -39.02 -0.29 -1.26 16 10 C -0.09 -1.27 5.00 -105.03 -0.52 -1.79 16 11 C 0.55 9.31 7.23 -12.32 -0.09 9.22 16 12 O -0.54 -10.71 16.47 5.32 0.09 -10.63 16 13 N -0.59 -10.00 2.97 -173.87 -0.52 -10.52 16 14 C 0.11 2.07 6.42 -3.71 -0.02 2.05 16 15 C -0.12 -2.75 5.16 -26.59 -0.14 -2.89 16 16 C 0.05 1.10 2.06 -91.71 -0.19 0.91 16 17 C -0.51 -13.33 8.56 -34.44 -0.29 -13.63 16 18 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 20 N -0.89 -24.28 11.30 55.43 0.63 -23.66 16 21 Si 0.89 20.67 29.54 -169.99 -5.02 15.64 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.12 -2.30 5.30 -26.61 -0.14 -2.44 16 26 C 0.09 1.43 5.38 -3.71 -0.02 1.41 16 27 C -0.02 -0.22 9.27 -38.76 -0.36 -0.58 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.16 1.11 7.60 -52.49 -0.40 0.71 16 32 H 0.15 1.49 7.07 -52.49 -0.37 1.12 16 33 H 0.08 1.52 7.03 -51.93 -0.36 1.15 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.11 2.66 6.03 -51.93 -0.31 2.34 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.94 4.55 -51.93 -0.24 0.71 16 43 H 0.15 2.11 7.64 -52.49 -0.40 1.71 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -30.40 362.24 -7.56 -37.96 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.43 Total: 0.28 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.10 Total: -2.33 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.11 Total: -34.18 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.62 Total: -21.58 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.40 -7.56 -37.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935319527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.500 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds