Wall clock time and date at job start Tue Mar 31 2020 19:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34703 * 117.00049 * 2 1 4 4 O 1.21465 * 120.00171 * 0.02562 * 3 2 1 5 5 C 1.47756 * 119.99595 * 180.02562 * 3 2 1 6 6 C 1.39726 * 120.06932 * 359.97438 * 5 3 2 7 7 C 1.38256 * 120.11500 * 179.97438 * 6 5 3 8 8 F 1.35097 * 119.87654 * 180.02562 * 7 6 5 9 9 C 1.38334 * 120.24883 * 0.02983 * 7 6 5 10 10 C 1.39643 * 120.12799 * 359.97438 * 9 7 6 11 11 C 1.47863 * 120.05934 * 179.97438 * 10 9 7 12 12 O 1.21553 * 120.00021 * 230.88052 * 11 10 9 13 13 N 1.34784 * 119.99936 * 50.87288 * 11 10 9 14 14 C 1.46924 * 120.62655 * 176.18296 * 13 11 10 15 15 C 1.53195 * 108.88830 * 233.51669 * 14 13 11 16 16 C 1.53070 * 109.29611 * 305.57653 * 15 14 13 17 17 C 1.50700 * 109.44221 * 181.23472 * 16 15 14 18 18 H 1.08000 * 120.00470 * 239.79661 * 17 16 15 19 19 C 1.37881 * 119.99718 * 59.80294 * 17 16 15 20 20 N 1.31513 * 120.00091 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00190 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47065 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47133 * 119.99521 * 21 19 17 24 24 H 1.48497 * 109.47167 * 239.99919 * 21 19 17 25 25 C 1.53040 * 109.65733 * 61.15788 * 16 15 14 26 26 C 1.46925 * 120.62760 * 356.16241 * 13 11 10 27 27 C 1.39320 * 119.88583 * 0.25382 * 10 9 7 28 28 H 1.09002 * 109.46974 * 300.00224 * 1 2 3 29 29 H 1.09008 * 109.47250 * 59.99799 * 1 2 3 30 30 H 1.08997 * 109.47632 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.93851 * 0.02562 * 6 5 3 32 32 H 1.08001 * 119.93616 * 180.02562 * 9 7 6 33 33 H 1.08997 * 109.59233 * 353.37438 * 14 13 11 34 34 H 1.09003 * 109.58679 * 113.66040 * 14 13 11 35 35 H 1.08998 * 109.49970 * 65.39279 * 15 14 13 36 36 H 1.09003 * 109.49248 * 185.49070 * 15 14 13 37 37 H 1.08998 * 109.34992 * 301.13531 * 16 15 14 38 38 H 0.96998 * 120.00344 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.50443 * 178.74800 * 25 16 15 40 40 H 1.09005 * 109.52696 * 58.66527 * 25 16 15 41 41 H 1.09005 * 109.58086 * 246.19270 * 26 13 11 42 42 H 1.08993 * 109.59086 * 6.48117 * 26 13 11 43 43 H 1.07993 * 120.12624 * 179.72229 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2189 0.0005 5 6 3.5391 1.2774 -0.0006 6 6 4.3014 0.1064 -0.0006 7 6 5.6821 0.1776 -0.0016 8 9 6.4145 -0.9577 -0.0022 9 6 6.3166 1.4069 -0.0021 10 6 5.5648 2.5836 -0.0020 11 6 6.2445 3.8968 -0.0019 12 8 5.9340 4.7418 0.8148 13 7 7.2084 4.1567 -0.9074 14 6 7.8345 5.4842 -0.9740 15 6 7.7345 6.0083 -2.4101 16 6 8.3367 4.9772 -3.3678 17 6 8.2675 5.5026 -4.7786 18 1 7.7191 4.9566 -5.5320 19 6 8.9043 6.6805 -5.1076 20 7 9.5717 7.3456 -4.1902 21 14 8.8192 7.3315 -6.8564 22 1 8.0136 6.4043 -7.6910 23 1 8.1850 8.6742 -6.8544 24 1 10.1917 7.4330 -7.4141 25 6 7.5523 3.6666 -3.2730 26 6 7.6533 3.1178 -1.8462 27 6 4.1731 2.5183 0.0039 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.8111 -0.8559 -0.0006 32 1 7.3954 1.4566 -0.0034 33 1 7.3175 6.1664 -0.2993 34 1 8.8827 5.4088 -0.6847 35 1 6.6875 6.1715 -2.6657 36 1 8.2806 6.9479 -2.4932 37 1 9.3773 4.7980 -3.0977 38 1 10.0195 8.1744 -4.4215 39 1 7.9693 2.9415 -3.9719 40 1 6.5063 3.8493 -3.5192 41 1 8.6875 2.8490 -1.6305 42 1 7.0183 2.2377 -1.7452 43 1 3.5879 3.4260 0.0085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935319527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:41 Heat of formation + Delta-G solvation = -152.589510 kcal Electronic energy + Delta-G solvation = -28669.807528 eV Core-core repulsion = 24400.983960 eV Total energy + Delta-G solvation = -4268.823568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.03091 -41.98132 -41.36591 -39.45742 -38.40955 -37.60285 -35.46811 -33.61488 -32.74963 -31.96443 -31.53903 -28.78851 -28.16750 -25.99168 -25.33647 -24.40197 -23.60392 -22.47873 -21.61790 -20.39854 -19.15046 -18.74358 -18.46870 -17.90947 -17.52488 -17.50954 -17.16668 -17.08238 -16.73463 -16.66548 -16.49261 -16.02313 -15.08458 -14.93475 -14.76583 -14.66048 -14.51997 -14.40994 -14.27648 -13.93465 -13.54480 -13.35457 -13.22350 -13.08612 -13.02876 -12.94313 -12.84408 -12.42956 -12.18645 -11.96838 -11.89288 -11.87130 -11.44287 -11.29078 -10.98695 -10.84702 -10.42269 -10.34168 -10.08045 -9.65256 -8.08275 -6.21391 -0.78766 -0.33217 1.06688 1.36085 1.39796 1.43380 1.52762 1.57998 1.91246 2.33170 2.43713 2.84852 3.14224 3.18930 3.49506 3.69195 3.72692 3.78902 4.01629 4.15528 4.27834 4.30332 4.33582 4.34859 4.41515 4.50502 4.56158 4.63999 4.68880 4.72273 4.81934 4.84815 4.87545 4.95993 5.13364 5.17152 5.22143 5.40103 5.42653 5.49930 5.65698 5.97858 6.10235 6.34126 6.38355 6.50186 6.90077 6.93607 7.46894 8.95359 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014502 B = 0.002820 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.259899 B = 9925.447041 C =10336.924113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.516 3.484 4 O -0.528 6.528 5 C -0.105 4.105 6 C -0.058 4.058 7 C 0.097 3.903 8 F -0.123 7.123 9 C -0.080 4.080 10 C -0.108 4.108 11 C 0.555 3.445 12 O -0.576 6.576 13 N -0.590 5.590 14 C 0.120 3.880 15 C -0.113 4.113 16 C 0.045 3.955 17 C -0.530 4.530 18 H 0.052 0.948 19 C 0.014 3.986 20 N -0.915 5.915 21 Si 0.948 3.052 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.280 1.280 25 C -0.118 4.118 26 C 0.100 3.900 27 C -0.025 4.025 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.140 0.860 31 H 0.185 0.815 32 H 0.169 0.831 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.021 0.979 36 H 0.076 0.924 37 H 0.008 0.992 38 H 0.260 0.740 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.569 -20.251 9.208 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.362 3.638 4 O -0.419 6.419 5 C -0.106 4.106 6 C -0.077 4.077 7 C 0.077 3.923 8 F -0.102 7.102 9 C -0.099 4.099 10 C -0.111 4.111 11 C 0.344 3.656 12 O -0.457 6.457 13 N -0.321 5.321 14 C -0.002 4.002 15 C -0.152 4.152 16 C 0.026 3.974 17 C -0.568 4.568 18 H 0.070 0.930 19 C -0.185 4.185 20 N -0.554 5.554 21 Si 0.774 3.226 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.206 1.206 25 C -0.156 4.156 26 C -0.021 4.021 27 C -0.044 4.044 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.202 0.798 32 H 0.187 0.813 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.040 0.960 36 H 0.094 0.906 37 H 0.027 0.973 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.808 -19.418 9.625 24.680 hybrid contribution 0.060 1.156 -1.036 1.554 sum -11.748 -18.261 8.589 23.351 Atomic orbital electron populations 1.23669 0.73731 1.06268 1.02798 1.86511 1.25572 1.30690 1.83592 1.20986 0.88701 0.81918 0.72230 1.90879 1.67146 1.37196 1.46681 1.18631 0.89563 0.93512 1.08889 1.21754 0.91661 1.00161 0.94145 1.17139 0.89048 0.81875 1.04197 1.91589 1.76850 1.47842 1.93887 1.21731 1.02612 0.89631 0.95968 1.19353 0.93475 0.92751 1.05563 1.18486 0.79249 0.87117 0.80790 1.90768 1.65839 1.49032 1.40066 1.48219 1.36703 1.13933 1.33239 1.21656 0.97309 0.82918 0.98294 1.21806 0.98645 1.02224 0.92517 1.18629 0.93973 0.91295 0.93479 1.21604 1.31799 1.07252 0.96177 0.92992 1.25678 0.95077 0.97259 1.00474 1.69964 1.34557 1.16701 1.34221 0.85657 0.77750 0.78069 0.81081 1.19236 1.21179 1.20631 1.21884 0.99980 0.98343 0.95360 1.22312 1.01527 0.89953 0.88337 1.21182 0.92790 0.97960 0.92515 0.91715 0.91847 0.84209 0.79817 0.81333 0.91104 0.91035 0.96000 0.90610 0.97346 0.93061 0.90531 0.93701 0.89269 0.87496 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.50 9.81 -56.13 -0.55 -6.05 16 3 C 0.52 11.17 7.90 70.34 0.56 11.73 16 4 O -0.53 -14.96 16.13 19.95 0.32 -14.64 16 5 C -0.10 -2.12 5.87 -20.13 -0.12 -2.24 16 6 C -0.06 -0.87 9.59 22.63 0.22 -0.65 16 7 C 0.10 1.55 7.28 22.30 0.16 1.71 16 8 F -0.12 -1.92 17.26 44.97 0.78 -1.15 16 9 C -0.08 -1.51 7.34 22.63 0.17 -1.35 16 10 C -0.11 -2.75 5.00 -20.13 -0.10 -2.85 16 11 C 0.56 18.55 7.23 86.79 0.63 19.18 16 12 O -0.58 -23.50 16.47 -3.88 -0.06 -23.56 16 13 N -0.59 -19.78 2.97 -822.27 -2.45 -22.23 16 14 C 0.12 4.67 6.42 86.36 0.55 5.22 16 15 C -0.11 -5.23 5.16 30.68 0.16 -5.07 16 16 C 0.04 2.08 2.06 -11.50 -0.02 2.05 16 17 C -0.53 -27.94 8.56 25.60 0.22 -27.72 16 18 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 19 C 0.01 0.74 5.30 84.66 0.45 1.19 16 20 N -0.91 -51.16 11.30 21.45 0.24 -50.92 16 21 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 C -0.12 -4.24 5.30 30.67 0.16 -4.08 16 26 C 0.10 2.81 5.38 86.36 0.46 3.28 16 27 C -0.03 -0.64 9.27 22.80 0.21 -0.42 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.18 1.70 7.60 -2.91 -0.02 1.68 16 32 H 0.17 2.63 7.07 -2.91 -0.02 2.61 16 33 H 0.07 2.85 7.03 -2.39 -0.02 2.83 16 34 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 3.97 6.03 -2.39 -0.01 3.96 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 39 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 42 H 0.11 2.35 4.55 -2.39 -0.01 2.34 16 43 H 0.13 3.86 7.64 -2.91 -0.02 3.84 16 Total: -1.00 -68.03 362.24 6.25 -61.77 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.05 Total: 10.48 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 4.90 Total: 1.46 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -2.20 Total: -73.15 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.29 Total: -44.25 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.78 Total: -1.15 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -68.03 6.25 -61.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935319527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.816 kcal (2) G-P(sol) polarization free energy of solvation -68.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds