Wall clock time and date at job start Tue Mar 31 2020 18:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65602 * 119.99842 * 2 1 4 4 O 1.42101 * 104.27287 * 308.92476 * 3 2 1 5 5 O 1.42098 * 104.27935 * 181.07414 * 3 2 1 6 6 C 1.81397 * 104.45007 * 64.99561 * 3 2 1 7 7 C 1.53009 * 109.46845 * 180.02562 * 6 3 2 8 8 C 1.50697 * 109.46783 * 180.02562 * 7 6 3 9 9 O 1.21287 * 120.00484 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99918 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00047 * 180.02562 * 10 8 7 12 12 H 1.09006 * 109.45832 * 325.02344 * 11 10 8 13 13 C 1.53038 * 109.46171 * 84.99571 * 11 10 8 14 14 C 1.53192 * 109.31293 * 181.38575 * 13 11 10 15 15 N 1.46934 * 108.77354 * 305.36742 * 14 13 11 16 16 C 1.36933 * 120.62687 * 233.58293 * 15 14 13 17 17 H 1.08006 * 119.99842 * 151.82766 * 16 15 14 18 18 C 1.38816 * 120.00487 * 331.83196 * 16 15 14 19 19 N 1.31614 * 119.99631 * 343.08647 * 18 16 15 20 20 Si 1.86799 * 119.99920 * 163.08226 * 18 16 15 21 21 H 1.48503 * 109.46888 * 60.00379 * 20 18 16 22 22 H 1.48509 * 109.46792 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47652 * 300.00123 * 20 18 16 24 24 C 1.46924 * 118.74005 * 53.60731 * 15 14 13 25 25 C 1.53042 * 109.45792 * 205.06793 * 11 10 8 26 26 H 1.09000 * 109.49755 * 298.56154 * 25 11 10 27 27 O 1.42895 * 109.50025 * 58.65822 * 25 11 10 28 28 H 1.09007 * 109.46626 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47421 * 300.00056 * 1 2 3 30 30 H 1.08995 * 109.46964 * 60.00516 * 1 2 3 31 31 H 0.96995 * 120.00370 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47325 * 300.00136 * 6 3 2 33 33 H 1.08994 * 109.47348 * 60.00618 * 6 3 2 34 34 H 1.09000 * 109.47167 * 300.00107 * 7 6 3 35 35 H 1.09007 * 109.46874 * 60.00449 * 7 6 3 36 36 H 0.97003 * 119.99667 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.49764 * 301.33773 * 13 11 10 38 38 H 1.08998 * 109.49427 * 61.43832 * 13 11 10 39 39 H 1.08998 * 109.58658 * 65.14901 * 14 13 11 40 40 H 1.08994 * 109.59031 * 185.58227 * 14 13 11 41 41 H 0.97006 * 119.99957 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58340 * 66.17845 * 24 15 14 43 43 H 1.08997 * 109.58640 * 186.45775 * 24 15 14 44 44 H 0.96692 * 114.00337 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7188 2.1702 -1.0714 5 8 3.6606 1.0493 -0.0258 6 6 1.8762 2.1974 1.5919 7 6 2.5888 3.5460 1.7130 8 6 2.2431 4.1798 3.0358 9 8 1.5004 3.6089 3.8062 10 7 2.7593 5.3811 3.3628 11 6 2.4237 5.9970 4.6490 12 1 1.3938 5.7539 4.9103 13 6 3.3641 5.4620 5.7314 14 6 2.9881 6.0818 7.0809 15 7 2.9926 7.5450 6.9469 16 6 3.7282 8.3216 7.8019 17 1 4.1046 9.2791 7.4732 18 6 3.9901 7.8782 9.0909 19 7 3.2787 6.8987 9.6072 20 14 5.3525 8.6718 10.0928 21 1 5.0634 10.1185 10.2628 22 1 5.4294 8.0218 11.4259 23 1 6.6479 8.5056 9.3861 24 6 2.1925 8.1591 5.8785 25 6 2.5775 7.5160 4.5425 26 1 3.6128 7.7611 4.3057 27 8 1.7216 8.0108 3.5107 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 0.7986 2.3497 1.6509 33 1 2.1957 1.5433 2.4032 34 1 3.6666 3.3941 1.6539 35 1 2.2690 4.2000 0.9017 36 1 3.3537 5.8376 2.7469 37 1 3.2711 4.3776 5.7905 38 1 4.3920 5.7265 5.4834 39 1 1.9936 5.7448 7.3733 40 1 3.7146 5.7819 7.8359 41 1 3.4620 6.5885 10.5079 42 1 1.1332 7.9914 6.0730 43 1 2.3922 9.2300 5.8420 44 1 1.7672 8.9688 3.3876 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099835123.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:50 Heat of formation + Delta-G solvation = -137.380299 kcal Electronic energy + Delta-G solvation = -27427.137092 eV Core-core repulsion = 23314.336958 eV Total energy + Delta-G solvation = -4112.800134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -39.91716 -38.07532 -37.44008 -36.30417 -35.45654 -35.38744 -34.41677 -33.43864 -31.93755 -30.05577 -28.63509 -26.39452 -25.99594 -24.53589 -22.44475 -21.84863 -20.34592 -19.73380 -19.48583 -18.30634 -17.49561 -17.11980 -16.74142 -16.66527 -16.12492 -16.05959 -15.70928 -15.00674 -14.88607 -14.35290 -14.08968 -13.94044 -13.77301 -13.61122 -13.25809 -13.19703 -12.90575 -12.71299 -12.44049 -12.34066 -12.32914 -12.16214 -12.01180 -11.75360 -11.62351 -11.22585 -11.13170 -10.89399 -10.73401 -10.39480 -10.32073 -10.04551 -9.98464 -9.89669 -9.76749 -9.48398 -8.83007 -8.50153 -6.81377 -5.88858 -3.33625 -0.11412 2.33746 2.68606 3.17199 3.32614 3.39000 3.39427 3.49035 3.87951 4.07717 4.32284 4.46795 4.48365 4.56250 4.72493 5.00379 5.07544 5.14197 5.24520 5.28396 5.29989 5.33060 5.43472 5.49893 5.50502 5.72281 5.91362 6.05431 6.24631 6.43309 6.46254 6.49566 6.60791 6.72118 6.78760 7.23581 7.54982 7.63192 7.68822 7.86904 8.31529 8.33883 9.09035 9.71282 10.27206 11.19760 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.002292 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.409141 B =12214.630797 C =12620.214710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.123 6.123 3 S 2.615 3.385 4 O -0.955 6.955 5 O -0.957 6.957 6 C -0.610 4.610 7 C -0.136 4.136 8 C 0.519 3.481 9 O -0.538 6.538 10 N -0.714 5.714 11 C 0.162 3.838 12 H 0.088 0.912 13 C -0.147 4.147 14 C 0.172 3.828 15 N -0.588 5.588 16 C -0.261 4.261 17 H 0.067 0.933 18 C 0.006 3.994 19 N -0.899 5.899 20 Si 0.906 3.094 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.121 3.879 25 C 0.080 3.920 26 H 0.057 0.943 27 O -0.572 6.572 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.418 0.582 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.398 0.602 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.024 0.976 40 H 0.093 0.907 41 H 0.257 0.743 42 H 0.029 0.971 43 H 0.060 0.940 44 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 -10.338 -18.968 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.883 5.883 3 S 2.706 3.294 4 O -0.944 6.944 5 O -0.947 6.947 6 C -0.739 4.739 7 C -0.177 4.177 8 C 0.303 3.697 9 O -0.415 6.415 10 N -0.364 5.364 11 C 0.058 3.942 12 H 0.106 0.894 13 C -0.188 4.188 14 C 0.045 3.955 15 N -0.312 5.312 16 C -0.391 4.391 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.543 5.543 20 Si 0.735 3.265 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.209 1.209 24 C -0.007 4.007 25 C 0.019 3.981 26 H 0.075 0.925 27 O -0.376 6.376 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.252 0.748 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.232 0.768 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.534 -10.976 -18.973 22.202 hybrid contribution 0.900 0.783 1.071 1.603 sum -2.634 -10.194 -17.902 20.768 Atomic orbital electron populations 1.21540 0.78595 1.04395 1.02157 1.55357 1.16086 1.24579 1.92230 1.04917 0.73697 0.73941 0.76835 1.93609 1.78813 1.72294 1.49732 1.93618 1.32662 1.81201 1.87264 1.30378 1.11945 1.07724 1.23893 1.21363 1.02589 0.94802 0.98974 1.20074 0.80484 0.81481 0.87616 1.90711 1.36407 1.62471 1.51944 1.46087 1.49632 1.19878 1.20802 1.21043 1.00881 0.90066 0.82225 0.89365 1.22614 0.98566 1.00008 0.97569 1.20827 1.00256 0.82331 0.92050 1.44035 1.52256 1.01651 1.33247 1.19111 1.25732 1.02545 0.91673 0.91573 1.25088 0.99186 0.98960 0.96128 1.70021 1.38697 1.30139 1.15414 0.86332 0.82142 0.78839 0.79195 1.20789 1.21534 1.20928 1.21527 0.95062 0.96506 0.87609 1.22775 0.92920 0.93177 0.89255 0.92515 1.86469 1.67448 1.26966 1.56717 0.89903 0.91954 0.91261 0.74810 0.84236 0.83967 0.87380 0.87341 0.76836 0.91943 0.92253 0.95818 0.88867 0.93342 0.95341 0.92104 0.77903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 11.03 59.85 0.66 1.03 16 2 N -1.12 -6.72 6.08 -16.64 -0.10 -6.82 16 3 S 2.61 22.11 5.46 -107.50 -0.59 21.53 16 4 O -0.95 -11.00 17.73 -57.54 -1.02 -12.02 16 5 O -0.96 -11.00 18.08 -57.54 -1.04 -12.04 16 6 C -0.61 -5.10 5.31 37.16 0.20 -4.91 16 7 C -0.14 -1.30 5.71 -27.88 -0.16 -1.46 16 8 C 0.52 7.32 7.79 -10.98 -0.09 7.24 16 9 O -0.54 -9.60 15.64 5.55 0.09 -9.52 16 10 N -0.71 -10.00 4.92 -53.76 -0.26 -10.27 16 11 C 0.16 2.81 2.12 -67.89 -0.14 2.67 16 12 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 13 C -0.15 -2.81 5.65 -26.61 -0.15 -2.96 16 14 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 15 N -0.59 -14.15 2.99 -172.32 -0.52 -14.66 16 16 C -0.26 -6.88 9.58 -15.06 -0.14 -7.03 16 17 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 18 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 19 N -0.90 -25.56 11.20 55.49 0.62 -24.94 16 20 Si 0.91 21.05 29.59 -169.99 -5.03 16.02 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 C 0.12 2.40 6.14 -3.71 -0.02 2.37 16 25 C 0.08 1.31 3.14 -26.61 -0.08 1.23 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 27 O -0.57 -8.20 13.16 -35.23 -0.46 -8.66 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.23 7.73 -51.93 -0.40 -0.17 16 30 H 0.07 0.35 8.04 -51.93 -0.42 -0.07 16 31 H 0.42 1.85 8.92 -34.47 -0.31 1.54 16 32 H 0.14 1.08 7.73 -51.92 -0.40 0.67 16 33 H 0.14 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.40 4.44 8.60 -40.82 -0.35 4.09 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 44 H 0.37 3.81 9.08 45.56 0.41 4.23 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -37.29 373.97 -8.65 -45.94 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.94 Total: 7.54 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.04 Total: 2.25 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.26 Total: -56.68 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -2.44 Total: -42.24 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Atomic # 16 Polarization: 22.11 SS G_CDS: -0.59 Total: 21.53 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.29 -8.65 -45.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099835123.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.442 kcal (2) G-P(sol) polarization free energy of solvation -37.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds