Wall clock time and date at job start Tue Mar 31 2020 18:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65602 * 119.99842 * 2 1 4 4 O 1.42101 * 104.27287 * 308.92476 * 3 2 1 5 5 O 1.42098 * 104.27935 * 181.07414 * 3 2 1 6 6 C 1.81397 * 104.45007 * 64.99561 * 3 2 1 7 7 C 1.53009 * 109.46845 * 180.02562 * 6 3 2 8 8 C 1.50697 * 109.46783 * 180.02562 * 7 6 3 9 9 O 1.21287 * 120.00484 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99918 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00047 * 180.02562 * 10 8 7 12 12 H 1.09006 * 109.45832 * 325.02344 * 11 10 8 13 13 C 1.53038 * 109.46171 * 84.99571 * 11 10 8 14 14 C 1.53192 * 109.31293 * 181.38575 * 13 11 10 15 15 N 1.46934 * 108.77354 * 305.36742 * 14 13 11 16 16 C 1.36933 * 120.62687 * 233.58293 * 15 14 13 17 17 H 1.08006 * 119.99842 * 151.82766 * 16 15 14 18 18 C 1.38816 * 120.00487 * 331.83196 * 16 15 14 19 19 N 1.31614 * 119.99631 * 343.08647 * 18 16 15 20 20 Si 1.86799 * 119.99920 * 163.08226 * 18 16 15 21 21 H 1.48503 * 109.46888 * 60.00379 * 20 18 16 22 22 H 1.48509 * 109.46792 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47652 * 300.00123 * 20 18 16 24 24 C 1.46924 * 118.74005 * 53.60731 * 15 14 13 25 25 C 1.53042 * 109.45792 * 205.06793 * 11 10 8 26 26 H 1.09000 * 109.49755 * 298.56154 * 25 11 10 27 27 O 1.42895 * 109.50025 * 58.65822 * 25 11 10 28 28 H 1.09007 * 109.46626 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47421 * 300.00056 * 1 2 3 30 30 H 1.08995 * 109.46964 * 60.00516 * 1 2 3 31 31 H 0.96995 * 120.00370 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47325 * 300.00136 * 6 3 2 33 33 H 1.08994 * 109.47348 * 60.00618 * 6 3 2 34 34 H 1.09000 * 109.47167 * 300.00107 * 7 6 3 35 35 H 1.09007 * 109.46874 * 60.00449 * 7 6 3 36 36 H 0.97003 * 119.99667 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.49764 * 301.33773 * 13 11 10 38 38 H 1.08998 * 109.49427 * 61.43832 * 13 11 10 39 39 H 1.08998 * 109.58658 * 65.14901 * 14 13 11 40 40 H 1.08994 * 109.59031 * 185.58227 * 14 13 11 41 41 H 0.97006 * 119.99957 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58340 * 66.17845 * 24 15 14 43 43 H 1.08997 * 109.58640 * 186.45775 * 24 15 14 44 44 H 0.96692 * 114.00337 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7188 2.1702 -1.0714 5 8 3.6606 1.0493 -0.0258 6 6 1.8762 2.1974 1.5919 7 6 2.5888 3.5460 1.7130 8 6 2.2431 4.1798 3.0358 9 8 1.5004 3.6089 3.8062 10 7 2.7593 5.3811 3.3628 11 6 2.4237 5.9970 4.6490 12 1 1.3938 5.7539 4.9103 13 6 3.3641 5.4620 5.7314 14 6 2.9881 6.0818 7.0809 15 7 2.9926 7.5450 6.9469 16 6 3.7282 8.3216 7.8019 17 1 4.1046 9.2791 7.4732 18 6 3.9901 7.8782 9.0909 19 7 3.2787 6.8987 9.6072 20 14 5.3525 8.6718 10.0928 21 1 5.0634 10.1185 10.2628 22 1 5.4294 8.0218 11.4259 23 1 6.6479 8.5056 9.3861 24 6 2.1925 8.1591 5.8785 25 6 2.5775 7.5160 4.5425 26 1 3.6128 7.7611 4.3057 27 8 1.7216 8.0108 3.5107 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 0.7986 2.3497 1.6509 33 1 2.1957 1.5433 2.4032 34 1 3.6666 3.3941 1.6539 35 1 2.2690 4.2000 0.9017 36 1 3.3537 5.8376 2.7469 37 1 3.2711 4.3776 5.7905 38 1 4.3920 5.7265 5.4834 39 1 1.9936 5.7448 7.3733 40 1 3.7146 5.7819 7.8359 41 1 3.4620 6.5885 10.5079 42 1 1.1332 7.9914 6.0730 43 1 2.3922 9.2300 5.8420 44 1 1.7672 8.9688 3.3876 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099835123.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:48 Heat of formation + Delta-G solvation = -171.485742 kcal Electronic energy + Delta-G solvation = -27428.616015 eV Core-core repulsion = 23314.336958 eV Total energy + Delta-G solvation = -4114.279057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.15262 -39.48360 -38.22266 -37.08996 -36.97950 -35.87003 -35.78938 -34.32891 -33.68381 -31.70384 -30.20764 -27.43828 -26.80170 -25.87250 -24.00685 -23.46049 -21.53730 -21.07959 -20.31760 -19.17171 -18.81454 -18.20957 -18.01719 -17.45186 -17.43676 -16.97283 -16.72475 -16.60401 -15.74099 -15.72402 -15.56827 -15.09232 -14.97463 -14.65510 -14.58026 -14.36453 -13.86968 -13.76900 -13.60480 -13.51835 -13.27818 -13.25105 -13.14216 -12.99159 -12.69259 -12.57496 -12.45378 -12.40230 -12.15085 -12.07232 -11.96106 -11.89476 -11.40964 -11.10727 -10.89922 -10.57035 -10.45184 -10.04903 -8.77333 -7.91435 -5.39318 -0.79191 1.48169 1.50640 1.57324 1.59641 1.74156 2.13796 2.48575 2.75756 3.11843 3.21936 3.25917 3.33508 3.62285 3.79128 3.83255 3.90154 4.05909 4.21627 4.22100 4.35458 4.38905 4.49540 4.52417 4.65920 4.69853 4.81656 4.83885 4.93630 4.94829 5.01387 5.03064 5.11354 5.36451 5.47411 5.59156 5.64653 6.10863 6.32950 6.54805 6.87930 7.08727 7.24165 7.76965 8.29571 9.15730 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.002292 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.409141 B =12214.630797 C =12620.214710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.118 6.118 3 S 2.642 3.358 4 O -0.985 6.985 5 O -0.987 6.987 6 C -0.608 4.608 7 C -0.139 4.139 8 C 0.515 3.485 9 O -0.581 6.581 10 N -0.705 5.705 11 C 0.168 3.832 12 H 0.056 0.944 13 C -0.130 4.130 14 C 0.180 3.820 15 N -0.604 5.604 16 C -0.267 4.267 17 H 0.076 0.924 18 C -0.050 4.050 19 N -0.937 5.937 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.298 1.298 23 H -0.275 1.275 24 C 0.117 3.883 25 C 0.102 3.898 26 H 0.075 0.925 27 O -0.570 6.570 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.426 0.574 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.416 0.584 37 H 0.059 0.941 38 H 0.070 0.930 39 H -0.009 1.009 40 H 0.062 0.938 41 H 0.251 0.749 42 H 0.011 0.989 43 H 0.075 0.925 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 -9.853 -21.114 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.879 5.879 3 S 2.734 3.266 4 O -0.974 6.974 5 O -0.978 6.978 6 C -0.738 4.738 7 C -0.179 4.179 8 C 0.301 3.699 9 O -0.461 6.461 10 N -0.356 5.356 11 C 0.063 3.937 12 H 0.075 0.925 13 C -0.170 4.170 14 C 0.053 3.947 15 N -0.329 5.329 16 C -0.396 4.396 17 H 0.094 0.906 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.799 3.201 21 H -0.199 1.199 22 H -0.224 1.224 23 H -0.201 1.201 24 C -0.010 4.010 25 C 0.041 3.959 26 H 0.092 0.908 27 O -0.378 6.378 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.262 0.738 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.253 0.747 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.009 0.991 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.029 0.971 43 H 0.093 0.907 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.665 -10.456 -21.197 23.785 hybrid contribution 0.510 0.636 1.713 1.897 sum -2.155 -9.819 -19.484 21.925 Atomic orbital electron populations 1.21781 0.77532 1.06059 1.02440 1.55117 1.16776 1.24076 1.91953 1.03938 0.72677 0.73802 0.76149 1.93570 1.79188 1.73418 1.51269 1.93573 1.34757 1.81771 1.87668 1.30374 1.12391 1.07326 1.23695 1.21513 1.04430 0.95351 0.96656 1.20853 0.79372 0.80951 0.88694 1.90700 1.38248 1.63448 1.53662 1.45882 1.49943 1.20084 1.19707 1.20642 0.98511 0.91179 0.83376 0.92530 1.22330 0.99474 0.99441 0.95765 1.20547 0.97499 0.82869 0.93753 1.44251 1.52926 1.01707 1.33968 1.19526 1.25329 1.02836 0.91949 0.90591 1.25895 1.01410 0.99867 0.97436 1.70194 1.40523 1.32031 1.15464 0.85290 0.79560 0.78080 0.77188 1.19878 1.22409 1.20061 1.21702 0.93531 0.97523 0.88241 1.22300 0.93923 0.91982 0.87711 0.90759 1.86442 1.66954 1.29146 1.55221 0.87658 0.90997 0.91759 0.73781 0.83596 0.83602 0.84893 0.84847 0.74723 0.92257 0.91112 0.99132 0.91958 0.94005 0.97136 0.90669 0.75365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.03 127.77 1.41 1.91 16 2 N -1.12 -11.48 6.08 -206.54 -1.25 -12.73 16 3 S 2.64 40.43 5.46 -56.49 -0.31 40.13 16 4 O -0.98 -21.23 17.73 -127.65 -2.26 -23.49 16 5 O -0.99 -21.26 18.08 -127.65 -2.31 -23.57 16 6 C -0.61 -9.04 5.31 71.99 0.38 -8.66 16 7 C -0.14 -2.29 5.71 29.85 0.17 -2.12 16 8 C 0.51 13.68 7.79 87.66 0.68 14.37 16 9 O -0.58 -20.54 15.64 -3.05 -0.05 -20.59 16 10 N -0.71 -18.28 4.92 -442.39 -2.18 -20.45 16 11 C 0.17 5.72 2.12 45.02 0.10 5.82 16 12 H 0.06 2.31 7.58 -2.38 -0.02 2.30 16 13 C -0.13 -4.98 5.65 30.67 0.17 -4.80 16 14 C 0.18 8.76 5.30 86.36 0.46 9.22 16 15 N -0.60 -29.34 2.99 -699.09 -2.09 -31.43 16 16 C -0.27 -14.03 9.58 84.04 0.81 -13.22 16 17 H 0.08 3.78 7.89 -2.91 -0.02 3.76 16 18 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 19 N -0.94 -55.09 11.20 21.65 0.24 -54.84 16 20 Si 0.97 43.52 29.59 68.60 2.03 45.55 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C 0.12 4.56 6.14 86.36 0.53 5.09 16 25 C 0.10 3.14 3.14 30.67 0.10 3.24 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 O -0.57 -14.67 13.16 -148.98 -1.96 -16.63 16 28 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.07 0.41 7.73 -2.39 -0.02 0.39 16 30 H 0.06 0.56 8.04 -2.39 -0.02 0.54 16 31 H 0.43 3.05 8.92 -96.75 -0.86 2.18 16 32 H 0.15 2.00 7.73 -2.39 -0.02 1.98 16 33 H 0.15 2.10 8.10 -2.39 -0.02 2.08 16 34 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.42 7.88 8.60 -92.71 -0.80 7.08 16 37 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.06 3.41 6.06 -2.39 -0.01 3.39 16 41 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 42 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 44 H 0.40 6.62 9.08 -74.06 -0.67 5.95 16 Total: -1.00 -82.33 373.97 -6.21 -88.54 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -1.29 Total: 21.01 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 5.22 Total: 8.51 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -5.28 Total: -119.46 kcal Atomic # 8 Polarization: -77.69 SS G_CDS: -6.58 Total: -84.27 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 40.43 SS G_CDS: -0.31 Total: 40.13 kcal Total: -82.33 -6.21 -88.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099835123.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.948 kcal (2) G-P(sol) polarization free energy of solvation -82.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds