Wall clock time and date at job start Tue Mar 31 2020 18:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 S 1.65595 * 120.00152 * 2 1 4 4 O 1.42104 * 104.27509 * 308.92336 * 3 2 1 5 5 O 1.42095 * 104.27873 * 181.06789 * 3 2 1 6 6 C 1.81395 * 104.45138 * 64.99685 * 3 2 1 7 7 C 1.53004 * 109.47151 * 180.02562 * 6 3 2 8 8 C 1.50700 * 109.47006 * 179.97438 * 7 6 3 9 9 O 1.21286 * 120.00379 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00168 * 179.97438 * 8 7 6 11 11 C 1.46492 * 120.00185 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46145 * 34.97132 * 11 10 8 13 13 C 1.53044 * 109.46004 * 274.99866 * 11 10 8 14 14 C 1.53188 * 109.31144 * 178.62729 * 13 11 10 15 15 N 1.46924 * 108.77660 * 54.63990 * 14 13 11 16 16 C 1.36935 * 120.63266 * 126.36881 * 15 14 13 17 17 H 1.08010 * 119.99658 * 332.45023 * 16 15 14 18 18 C 1.38810 * 120.00425 * 152.18100 * 16 15 14 19 19 N 1.31619 * 119.99248 * 343.15714 * 18 16 15 20 20 Si 1.86791 * 120.00349 * 163.16058 * 18 16 15 21 21 H 1.48506 * 109.47397 * 89.99703 * 20 18 16 22 22 H 1.48497 * 109.47016 * 209.99796 * 20 18 16 23 23 H 1.48496 * 109.47229 * 329.99581 * 20 18 16 24 24 C 1.46927 * 118.73666 * 306.64008 * 15 14 13 25 25 C 1.52761 * 109.00479 * 53.30932 * 24 15 14 26 26 H 1.09007 * 109.55704 * 185.55004 * 25 24 15 27 27 O 1.42892 * 109.38701 * 65.51984 * 25 24 15 28 28 H 1.09000 * 109.47001 * 300.00588 * 1 2 3 29 29 H 1.08999 * 109.46785 * 60.00333 * 1 2 3 30 30 H 1.08998 * 109.46992 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99737 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47687 * 60.00023 * 6 3 2 33 33 H 1.09007 * 109.47224 * 300.00247 * 6 3 2 34 34 H 1.08999 * 109.47173 * 60.00153 * 7 6 3 35 35 H 1.08991 * 109.47208 * 299.99806 * 7 6 3 36 36 H 0.96999 * 119.99689 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.49401 * 58.67862 * 13 11 10 38 38 H 1.08993 * 109.49870 * 298.58039 * 13 11 10 39 39 H 1.09004 * 109.59286 * 294.85005 * 14 13 11 40 40 H 1.09012 * 109.58665 * 174.42760 * 14 13 11 41 41 H 0.97005 * 119.99823 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.58334 * 173.14400 * 24 15 14 43 43 H 1.09008 * 109.58397 * 293.57061 * 24 15 14 44 44 H 0.96696 * 114.00700 * 60.13917 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7190 2.1702 -1.0714 5 8 3.6607 1.0491 -0.0257 6 6 1.8765 2.1973 1.5919 7 6 2.5891 3.5459 1.7130 8 6 2.2424 4.1803 3.0353 9 8 1.4990 3.6098 3.8053 10 7 2.7593 5.3812 3.3628 11 6 2.4228 5.9976 4.6484 12 1 2.3171 5.2216 5.4066 13 6 1.1051 6.7646 4.5167 14 6 0.7390 7.3791 5.8713 15 7 1.8673 8.1944 6.3412 16 6 1.6811 9.5029 6.6994 17 1 0.8814 10.0762 6.2539 18 6 2.5166 10.0910 7.6390 19 7 3.2587 9.3376 8.4227 20 14 2.5877 11.9513 7.7914 21 1 1.5724 12.4067 8.7748 22 1 3.9397 12.3590 8.2510 23 1 2.3077 12.5673 6.4696 24 6 3.2003 7.5808 6.4137 25 6 3.5378 6.9624 5.0582 26 1 4.4806 6.4200 5.1292 27 8 3.6558 7.9979 4.0807 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9501 -0.8401 0.0004 32 1 2.1958 1.5432 2.4033 33 1 0.7987 2.3497 1.6509 34 1 2.2693 4.1999 0.9018 35 1 3.6667 3.3939 1.6540 36 1 3.3542 5.8373 2.7471 37 1 0.3163 6.0812 4.2020 38 1 1.2176 7.5566 3.7764 39 1 0.5375 6.5850 6.5904 40 1 -0.1449 8.0075 5.7607 41 1 3.8423 9.7484 9.0797 42 1 3.9401 8.3422 6.6608 43 1 3.2036 6.8034 7.1779 44 1 4.3452 8.6471 4.2765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099835125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:58 Heat of formation + Delta-G solvation = -135.703567 kcal Electronic energy + Delta-G solvation = -27535.409890 eV Core-core repulsion = 23422.682464 eV Total energy + Delta-G solvation = -4112.727426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.95216 -38.08019 -37.46588 -36.32817 -35.41241 -34.83777 -34.42095 -33.48298 -32.06201 -29.50897 -29.13646 -26.41981 -26.00814 -24.51280 -22.42480 -21.82104 -20.30185 -19.74081 -19.41397 -18.31975 -17.52503 -17.23899 -16.77289 -16.32900 -16.05916 -15.84618 -15.50125 -15.06373 -14.96508 -14.31165 -14.06447 -13.95884 -13.75490 -13.70740 -13.27790 -13.22159 -12.87444 -12.78793 -12.46108 -12.35713 -12.19165 -12.06461 -12.03760 -11.82229 -11.32727 -11.24117 -11.16957 -10.81839 -10.63749 -10.52098 -10.24984 -10.09821 -10.05019 -9.87224 -9.66054 -9.23598 -8.78263 -8.53872 -6.72205 -5.85353 -3.26011 -0.14257 2.31146 2.62098 3.15230 3.33555 3.41144 3.44031 3.47084 3.85002 4.04239 4.44638 4.44768 4.53316 4.64978 4.80063 4.97859 5.04522 5.11062 5.25337 5.27739 5.30663 5.36452 5.41181 5.46556 5.52199 5.89250 5.99911 6.16573 6.21104 6.40274 6.46785 6.49723 6.74083 6.78335 6.93097 7.12047 7.38311 7.62770 7.74556 8.18892 8.27818 8.38981 9.14104 9.77178 10.33817 11.23666 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.034461 B = 0.002200 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.322610 B =12725.742235 C =12942.639098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.124 6.124 3 S 2.615 3.385 4 O -0.954 6.954 5 O -0.957 6.957 6 C -0.610 4.610 7 C -0.136 4.136 8 C 0.517 3.483 9 O -0.541 6.541 10 N -0.716 5.716 11 C 0.161 3.839 12 H 0.091 0.909 13 C -0.137 4.137 14 C 0.148 3.852 15 N -0.583 5.583 16 C -0.243 4.243 17 H 0.065 0.935 18 C -0.001 4.001 19 N -0.907 5.907 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.145 3.855 25 C 0.073 3.927 26 H 0.044 0.956 27 O -0.560 6.560 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.418 0.582 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.404 0.596 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.019 0.981 40 H 0.057 0.943 41 H 0.254 0.746 42 H 0.096 0.904 43 H 0.027 0.973 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 -17.015 -15.497 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.883 5.883 3 S 2.706 3.294 4 O -0.944 6.944 5 O -0.948 6.948 6 C -0.739 4.739 7 C -0.178 4.178 8 C 0.301 3.699 9 O -0.419 6.419 10 N -0.367 5.367 11 C 0.057 3.943 12 H 0.109 0.891 13 C -0.177 4.177 14 C 0.021 3.979 15 N -0.305 5.305 16 C -0.373 4.373 17 H 0.083 0.917 18 C -0.199 4.199 19 N -0.553 5.553 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.018 3.982 25 C 0.012 3.988 26 H 0.062 0.938 27 O -0.366 6.366 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.252 0.748 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.238 0.762 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.114 0.886 43 H 0.045 0.955 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.497 -17.214 -15.769 23.393 hybrid contribution 0.652 1.028 0.889 1.507 sum -0.845 -16.187 -14.880 22.003 Atomic orbital electron populations 1.21543 0.78579 1.04396 1.02173 1.55364 1.16094 1.24575 1.92230 1.04922 0.73699 0.73941 0.76839 1.93614 1.78796 1.72274 1.49683 1.93616 1.32670 1.81210 1.87261 1.30380 1.11956 1.07697 1.23907 1.21368 1.02611 0.94815 0.99003 1.20140 0.80622 0.81384 0.87741 1.90700 1.36329 1.63031 1.51795 1.46214 1.49569 1.19555 1.21317 1.21051 0.95260 0.93706 0.84246 0.89119 1.22310 0.95273 0.99166 1.00949 1.20893 0.91556 0.93818 0.91606 1.43862 1.01546 1.09213 1.75869 1.19167 1.15313 0.86099 1.16697 0.91684 1.25025 1.01084 0.98094 0.95710 1.70018 1.30008 1.33614 1.21612 0.86285 0.77004 0.85591 0.77840 1.21428 1.21628 1.20474 1.21355 0.89716 0.97190 0.89949 1.22765 0.95402 0.88241 0.92414 0.93817 1.86337 1.61357 1.40514 1.48365 0.91962 0.91237 0.89901 0.74816 0.84024 0.84224 0.87293 0.87362 0.76175 0.92921 0.91112 0.96268 0.92414 0.93628 0.88578 0.95506 0.77725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.34 11.03 59.85 0.66 1.00 16 2 N -1.12 -6.30 6.08 -16.63 -0.10 -6.40 16 3 S 2.61 21.20 5.46 -107.50 -0.59 20.62 16 4 O -0.95 -10.82 17.73 -57.54 -1.02 -11.84 16 5 O -0.96 -10.63 18.08 -57.54 -1.04 -11.67 16 6 C -0.61 -4.77 5.31 37.16 0.20 -4.58 16 7 C -0.14 -1.25 5.71 -27.88 -0.16 -1.41 16 8 C 0.52 6.93 7.79 -10.98 -0.09 6.85 16 9 O -0.54 -9.09 15.64 5.55 0.09 -9.01 16 10 N -0.72 -9.85 5.05 -53.77 -0.27 -10.12 16 11 C 0.16 2.75 2.20 -67.89 -0.15 2.60 16 12 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 13 C -0.14 -2.51 5.51 -26.61 -0.15 -2.66 16 14 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 15 N -0.58 -14.11 2.94 -172.57 -0.51 -14.62 16 16 C -0.24 -6.48 9.58 -15.06 -0.14 -6.63 16 17 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 18 C 0.00 -0.04 4.92 -17.43 -0.09 -0.12 16 19 N -0.91 -25.38 11.18 55.49 0.62 -24.76 16 20 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.15 3.23 4.91 -3.93 -0.02 3.21 16 25 C 0.07 1.28 3.37 -26.83 -0.09 1.19 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 O -0.56 -9.52 12.08 -35.23 -0.43 -9.95 16 28 H 0.06 0.21 7.73 -51.93 -0.40 -0.19 16 29 H 0.07 0.34 8.04 -51.93 -0.42 -0.08 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.42 1.68 8.92 -34.47 -0.31 1.37 16 32 H 0.14 1.03 8.10 -51.92 -0.42 0.61 16 33 H 0.14 1.00 7.73 -51.92 -0.40 0.60 16 34 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.40 4.73 8.25 -40.82 -0.34 4.40 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.37 7.61 -51.93 -0.40 0.98 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.21 7.93 -51.92 -0.41 0.80 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.10 2.35 6.05 -51.93 -0.31 2.03 16 43 H 0.03 0.64 8.14 -51.92 -0.42 0.21 16 44 H 0.38 5.55 9.08 45.56 0.41 5.96 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -36.59 372.23 -8.61 -45.20 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.89 Total: 8.26 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -0.05 Total: 2.58 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.26 Total: -55.90 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -2.40 Total: -42.46 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 21.20 SS G_CDS: -0.59 Total: 20.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.59 -8.61 -45.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099835125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.504 kcal (2) G-P(sol) polarization free energy of solvation -36.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds