Wall clock time and date at job start Tue Mar 31 2020 18:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 S 1.65595 * 120.00152 * 2 1 4 4 O 1.42104 * 104.27509 * 308.92336 * 3 2 1 5 5 O 1.42095 * 104.27873 * 181.06789 * 3 2 1 6 6 C 1.81395 * 104.45138 * 64.99685 * 3 2 1 7 7 C 1.53004 * 109.47151 * 180.02562 * 6 3 2 8 8 C 1.50700 * 109.47006 * 179.97438 * 7 6 3 9 9 O 1.21286 * 120.00379 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00168 * 179.97438 * 8 7 6 11 11 C 1.46492 * 120.00185 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46145 * 34.97132 * 11 10 8 13 13 C 1.53044 * 109.46004 * 274.99866 * 11 10 8 14 14 C 1.53188 * 109.31144 * 178.62729 * 13 11 10 15 15 N 1.46924 * 108.77660 * 54.63990 * 14 13 11 16 16 C 1.36935 * 120.63266 * 126.36881 * 15 14 13 17 17 H 1.08010 * 119.99658 * 332.45023 * 16 15 14 18 18 C 1.38810 * 120.00425 * 152.18100 * 16 15 14 19 19 N 1.31619 * 119.99248 * 343.15714 * 18 16 15 20 20 Si 1.86791 * 120.00349 * 163.16058 * 18 16 15 21 21 H 1.48506 * 109.47397 * 89.99703 * 20 18 16 22 22 H 1.48497 * 109.47016 * 209.99796 * 20 18 16 23 23 H 1.48496 * 109.47229 * 329.99581 * 20 18 16 24 24 C 1.46927 * 118.73666 * 306.64008 * 15 14 13 25 25 C 1.52761 * 109.00479 * 53.30932 * 24 15 14 26 26 H 1.09007 * 109.55704 * 185.55004 * 25 24 15 27 27 O 1.42892 * 109.38701 * 65.51984 * 25 24 15 28 28 H 1.09000 * 109.47001 * 300.00588 * 1 2 3 29 29 H 1.08999 * 109.46785 * 60.00333 * 1 2 3 30 30 H 1.08998 * 109.46992 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99737 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47687 * 60.00023 * 6 3 2 33 33 H 1.09007 * 109.47224 * 300.00247 * 6 3 2 34 34 H 1.08999 * 109.47173 * 60.00153 * 7 6 3 35 35 H 1.08991 * 109.47208 * 299.99806 * 7 6 3 36 36 H 0.96999 * 119.99689 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.49401 * 58.67862 * 13 11 10 38 38 H 1.08993 * 109.49870 * 298.58039 * 13 11 10 39 39 H 1.09004 * 109.59286 * 294.85005 * 14 13 11 40 40 H 1.09012 * 109.58665 * 174.42760 * 14 13 11 41 41 H 0.97005 * 119.99823 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.58334 * 173.14400 * 24 15 14 43 43 H 1.09008 * 109.58397 * 293.57061 * 24 15 14 44 44 H 0.96696 * 114.00700 * 60.13917 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7190 2.1702 -1.0714 5 8 3.6607 1.0491 -0.0257 6 6 1.8765 2.1973 1.5919 7 6 2.5891 3.5459 1.7130 8 6 2.2424 4.1803 3.0353 9 8 1.4990 3.6098 3.8053 10 7 2.7593 5.3812 3.3628 11 6 2.4228 5.9976 4.6484 12 1 2.3171 5.2216 5.4066 13 6 1.1051 6.7646 4.5167 14 6 0.7390 7.3791 5.8713 15 7 1.8673 8.1944 6.3412 16 6 1.6811 9.5029 6.6994 17 1 0.8814 10.0762 6.2539 18 6 2.5166 10.0910 7.6390 19 7 3.2587 9.3376 8.4227 20 14 2.5877 11.9513 7.7914 21 1 1.5724 12.4067 8.7748 22 1 3.9397 12.3590 8.2510 23 1 2.3077 12.5673 6.4696 24 6 3.2003 7.5808 6.4137 25 6 3.5378 6.9624 5.0582 26 1 4.4806 6.4200 5.1292 27 8 3.6558 7.9979 4.0807 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9501 -0.8401 0.0004 32 1 2.1958 1.5432 2.4033 33 1 0.7987 2.3497 1.6509 34 1 2.2693 4.1999 0.9018 35 1 3.6667 3.3939 1.6540 36 1 3.3542 5.8373 2.7471 37 1 0.3163 6.0812 4.2020 38 1 1.2176 7.5566 3.7764 39 1 0.5375 6.5850 6.5904 40 1 -0.1449 8.0075 5.7607 41 1 3.8423 9.7484 9.0797 42 1 3.9401 8.3422 6.6608 43 1 3.2036 6.8034 7.1779 44 1 4.3452 8.6471 4.2765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099835125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:57 Heat of formation + Delta-G solvation = -168.601091 kcal Electronic energy + Delta-G solvation = -27536.836433 eV Core-core repulsion = 23422.682464 eV Total energy + Delta-G solvation = -4114.153969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.15255 -39.52354 -38.21744 -37.08264 -36.49226 -35.85870 -35.74788 -34.34243 -33.76163 -31.18375 -30.72321 -27.41288 -26.79367 -25.84835 -24.01557 -23.42671 -21.41631 -20.96766 -20.30731 -19.25832 -18.91239 -18.19773 -17.60843 -17.41895 -17.12200 -16.97641 -16.72462 -16.62734 -15.74890 -15.70235 -15.41287 -15.24129 -15.03349 -14.80878 -14.48849 -14.30115 -13.79792 -13.75308 -13.65513 -13.53411 -13.25048 -13.13841 -13.13017 -12.78959 -12.62673 -12.56860 -12.45023 -12.39744 -12.24392 -12.02200 -11.95013 -11.83196 -11.45568 -10.96821 -10.73753 -10.59117 -10.44414 -10.02615 -8.68016 -7.88352 -5.32133 -0.78506 1.47470 1.49926 1.58443 1.59526 1.75002 2.15335 2.51580 2.77076 3.22726 3.24768 3.34191 3.39708 3.62786 3.81386 3.84325 3.91285 4.01998 4.22802 4.34680 4.36914 4.41493 4.50149 4.60085 4.66592 4.75467 4.82041 4.88429 4.94229 4.95392 5.03893 5.06529 5.17810 5.43313 5.49534 5.55942 5.64839 6.11648 6.36717 6.56811 6.91351 7.14490 7.22632 7.82479 8.35069 9.18249 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.034461 B = 0.002200 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.322610 B =12725.742235 C =12942.639098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.117 6.117 3 S 2.640 3.360 4 O -0.987 6.987 5 O -0.988 6.988 6 C -0.606 4.606 7 C -0.141 4.141 8 C 0.516 3.484 9 O -0.577 6.577 10 N -0.709 5.709 11 C 0.167 3.833 12 H 0.075 0.925 13 C -0.120 4.120 14 C 0.144 3.856 15 N -0.599 5.599 16 C -0.254 4.254 17 H 0.061 0.939 18 C -0.048 4.048 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.272 1.272 24 C 0.149 3.851 25 C 0.090 3.910 26 H 0.070 0.930 27 O -0.561 6.561 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.426 0.574 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.417 0.583 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.011 0.989 40 H 0.055 0.945 41 H 0.251 0.749 42 H 0.072 0.928 43 H 0.003 0.997 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 -17.575 -17.110 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.879 5.879 3 S 2.732 3.268 4 O -0.977 6.977 5 O -0.978 6.978 6 C -0.736 4.736 7 C -0.182 4.182 8 C 0.302 3.698 9 O -0.457 6.457 10 N -0.360 5.360 11 C 0.062 3.938 12 H 0.093 0.907 13 C -0.160 4.160 14 C 0.018 3.982 15 N -0.322 5.322 16 C -0.384 4.384 17 H 0.079 0.921 18 C -0.243 4.243 19 N -0.582 5.582 20 Si 0.795 3.205 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.197 1.197 24 C 0.022 3.978 25 C 0.029 3.971 26 H 0.088 0.912 27 O -0.368 6.368 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.262 0.738 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.253 0.747 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.021 0.979 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.358 -17.788 -17.437 24.946 hybrid contribution 0.532 1.140 1.428 1.903 sum -0.826 -16.648 -16.009 23.111 Atomic orbital electron populations 1.21782 0.77531 1.06049 1.02446 1.55115 1.16761 1.24054 1.91976 1.03985 0.72686 0.73819 0.76265 1.93573 1.79202 1.73441 1.51436 1.93571 1.34762 1.81781 1.87706 1.30354 1.12443 1.07220 1.23574 1.21515 1.04463 0.95399 0.96774 1.20818 0.79519 0.80719 0.88713 1.90690 1.37896 1.63803 1.53287 1.46018 1.49912 1.19874 1.20229 1.20712 0.94313 0.93130 0.85676 0.90662 1.22082 0.96379 0.98970 0.98618 1.20977 0.90889 0.93353 0.92976 1.44089 1.02977 1.08989 1.76101 1.19410 1.15181 0.87314 1.16515 0.92099 1.25703 1.01095 1.01887 0.95582 1.70162 1.30748 1.35051 1.22245 0.85289 0.76573 0.80834 0.77763 1.21672 1.21654 1.19687 1.21244 0.88413 0.95862 0.92240 1.22437 0.96621 0.88333 0.89706 0.91233 1.86312 1.62073 1.40763 1.47652 0.90857 0.91905 0.87662 0.73781 0.83308 0.83469 0.85147 0.84929 0.74660 0.92148 0.91682 0.97073 0.92654 0.94009 0.90950 0.97891 0.76470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.03 127.77 1.41 1.86 16 2 N -1.12 -10.45 6.08 -206.53 -1.25 -11.71 16 3 S 2.64 38.31 5.46 -56.49 -0.31 38.00 16 4 O -0.99 -21.00 17.73 -127.65 -2.26 -23.27 16 5 O -0.99 -20.47 18.08 -127.65 -2.31 -22.78 16 6 C -0.61 -8.09 5.31 71.98 0.38 -7.70 16 7 C -0.14 -2.17 5.71 29.85 0.17 -2.00 16 8 C 0.52 12.71 7.79 87.66 0.68 13.39 16 9 O -0.58 -18.55 15.64 -3.05 -0.05 -18.60 16 10 N -0.71 -17.91 5.05 -442.41 -2.23 -20.15 16 11 C 0.17 5.50 2.20 45.02 0.10 5.60 16 12 H 0.08 2.76 7.58 -2.39 -0.02 2.74 16 13 C -0.12 -4.32 5.51 30.67 0.17 -4.16 16 14 C 0.14 6.18 6.52 86.36 0.56 6.74 16 15 N -0.60 -29.34 2.94 -699.90 -2.06 -31.40 16 16 C -0.25 -13.66 9.58 84.03 0.81 -12.86 16 17 H 0.06 3.26 7.89 -2.91 -0.02 3.24 16 18 C -0.05 -2.57 4.92 84.86 0.42 -2.15 16 19 N -0.94 -53.24 11.18 21.65 0.24 -53.00 16 20 Si 0.97 43.67 29.59 68.60 2.03 45.70 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 C 0.15 6.72 4.91 86.22 0.42 7.14 16 25 C 0.09 3.06 3.37 30.53 0.10 3.16 16 26 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 27 O -0.56 -18.04 12.08 -148.98 -1.80 -19.84 16 28 H 0.07 0.33 7.73 -2.39 -0.02 0.31 16 29 H 0.06 0.52 8.04 -2.39 -0.02 0.50 16 30 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.43 2.64 8.92 -96.74 -0.86 1.78 16 32 H 0.15 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.15 1.78 7.73 -2.39 -0.02 1.76 16 34 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.42 8.52 8.25 -92.71 -0.77 7.75 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 2.43 7.61 -2.39 -0.02 2.41 16 39 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.05 2.34 7.93 -2.38 -0.02 2.32 16 41 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 42 H 0.07 3.60 6.05 -2.39 -0.01 3.59 16 43 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 44 H 0.39 10.76 9.08 -74.06 -0.67 10.08 16 Total: -1.00 -78.70 372.23 -6.03 -84.73 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -1.25 Total: 23.29 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 5.23 Total: 9.03 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -5.31 Total: -116.25 kcal Atomic # 8 Polarization: -78.07 SS G_CDS: -6.42 Total: -84.49 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 38.31 SS G_CDS: -0.31 Total: 38.00 kcal Total: -78.70 -6.03 -84.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099835125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.872 kcal (2) G-P(sol) polarization free energy of solvation -78.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds