Wall clock time and date at job start Tue Mar 31 2020 18:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 120.00426 * 2 1 4 4 C 1.50693 * 109.47106 * 275.00058 * 3 2 1 5 5 O 1.21282 * 120.00185 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00268 * 179.97438 * 4 3 2 7 7 C 1.46495 * 120.00737 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.44805 * 34.96252 * 7 6 4 9 9 C 1.53044 * 109.46025 * 275.00114 * 7 6 4 10 10 C 1.53187 * 109.31375 * 178.61038 * 9 7 6 11 11 N 1.46926 * 108.77629 * 54.63309 * 10 9 7 12 12 C 1.36940 * 120.62975 * 126.36813 * 11 10 9 13 13 H 1.07994 * 119.99945 * 332.44875 * 12 11 10 14 14 C 1.38814 * 119.99741 * 152.45397 * 12 11 10 15 15 N 1.31619 * 120.00115 * 342.76707 * 14 12 11 16 16 Si 1.86800 * 119.99880 * 162.77431 * 14 12 11 17 17 H 1.48496 * 109.47117 * 179.97438 * 16 14 12 18 18 H 1.48503 * 109.46804 * 299.99548 * 16 14 12 19 19 H 1.48500 * 109.47109 * 59.99370 * 16 14 12 20 20 C 1.46930 * 118.73855 * 306.64256 * 11 10 9 21 21 C 1.52766 * 109.00665 * 53.30825 * 20 11 10 22 22 H 1.09004 * 109.35765 * 65.49989 * 21 20 11 23 23 O 1.42900 * 109.58891 * 185.53442 * 21 20 11 24 24 S 1.65607 * 119.99877 * 179.97438 * 2 1 3 25 25 C 1.81397 * 104.44825 * 270.00432 * 24 2 1 26 26 O 1.42106 * 104.27402 * 26.07158 * 24 2 1 27 27 O 1.42093 * 104.27772 * 153.92574 * 24 2 1 28 28 H 1.09004 * 109.46942 * 89.99573 * 1 2 3 29 29 H 1.08993 * 109.47331 * 210.00066 * 1 2 3 30 30 H 1.08997 * 109.46484 * 330.00422 * 1 2 3 31 31 H 1.08998 * 109.46989 * 154.99729 * 3 2 1 32 32 H 1.09005 * 109.46735 * 35.00032 * 3 2 1 33 33 H 0.97004 * 119.99603 * 359.97438 * 6 4 3 34 34 H 1.09003 * 109.49377 * 58.65536 * 9 7 6 35 35 H 1.09002 * 109.51969 * 298.57861 * 9 7 6 36 36 H 1.09004 * 109.58464 * 294.84792 * 10 9 7 37 37 H 1.08993 * 109.70417 * 174.49249 * 10 9 7 38 38 H 0.96998 * 120.00327 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.58242 * 173.14315 * 20 11 10 40 40 H 1.08994 * 109.58811 * 293.56959 * 20 11 10 41 41 H 0.96706 * 114.00105 * 299.98481 * 23 21 20 42 42 H 1.08999 * 109.47387 * 59.99586 * 25 24 2 43 43 H 1.08998 * 109.46855 * 180.02562 * 25 24 2 44 44 H 1.08999 * 109.47120 * 299.99776 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3416 1.7656 -1.4153 5 8 1.8775 1.1235 -2.3337 6 7 2.9852 2.9241 -1.6607 7 6 3.1247 3.4075 -3.0365 8 1 2.2328 3.1450 -3.6057 9 6 4.3511 2.7592 -3.6829 10 6 4.4739 3.2403 -5.1321 11 7 4.4918 4.7094 -5.1428 12 6 5.5022 5.3903 -5.7678 13 1 6.4788 4.9392 -5.8635 14 6 5.2712 6.6603 -6.2783 15 7 4.0380 7.0769 -6.4732 16 14 6.7106 7.7779 -6.6889 17 1 6.2001 9.0693 -7.2152 18 1 7.5113 8.0244 -5.4628 19 1 7.5645 7.1283 -7.7155 20 6 3.4082 5.4341 -4.4649 21 6 3.2944 4.9284 -3.0278 22 1 4.1996 5.1903 -2.4799 23 8 2.1632 5.5311 -2.3960 24 16 2.2931 -1.4342 0.0006 25 6 2.5192 -1.8255 1.7574 26 8 1.3969 -2.3564 -0.6042 27 8 3.5395 -1.1196 -0.6048 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 3.1858 1.1175 0.4343 32 1 1.6503 2.0042 0.5895 33 1 3.3554 3.4382 -0.9261 34 1 4.2400 1.6750 -3.6675 35 1 5.2465 3.0410 -3.1289 36 1 3.6222 2.8810 -5.7097 37 1 5.3976 2.8604 -5.5684 38 1 3.8766 7.9642 -6.8303 39 1 3.6303 6.5012 -4.4588 40 1 2.4679 5.2574 -4.9870 41 1 2.2035 6.4964 -2.3551 42 1 1.5450 -1.9178 2.2375 43 1 3.0625 -2.7655 1.8532 44 1 3.0865 -1.0279 2.2372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099860876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:52 Heat of formation + Delta-G solvation = -118.160320 kcal Electronic energy + Delta-G solvation = -28253.979573 eV Core-core repulsion = 24142.012880 eV Total energy + Delta-G solvation = -4111.966693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.80172 -38.02628 -37.32968 -36.17298 -35.88402 -35.25284 -34.24148 -32.17933 -29.96426 -29.84572 -28.95550 -28.39127 -25.68981 -24.67857 -22.44587 -21.79671 -20.34969 -19.55979 -19.03063 -17.92939 -17.51271 -16.87290 -16.70138 -16.50454 -16.23156 -15.73404 -15.01739 -14.79689 -14.56026 -14.25102 -13.84646 -13.77354 -13.61494 -13.54945 -13.36297 -13.14108 -13.04093 -12.64601 -12.45975 -12.25131 -12.15433 -12.01165 -11.84522 -11.69636 -11.64262 -11.28443 -11.18523 -10.79936 -10.77457 -10.37713 -10.20125 -10.18877 -9.98215 -9.62900 -9.40935 -9.03534 -8.69546 -8.50509 -6.76024 -5.85511 -3.28633 -0.07023 2.29843 2.84207 3.34204 3.39208 3.40848 3.41822 3.70506 3.82694 4.21741 4.42524 4.45194 4.54312 4.59619 4.88712 4.90826 5.05367 5.21095 5.27978 5.31220 5.42444 5.51296 5.57527 5.63818 5.75204 5.95424 6.06059 6.10200 6.13457 6.27591 6.50177 6.55338 6.76521 6.90041 6.95914 7.14029 7.46566 7.73066 7.78229 8.09274 8.37684 8.48440 9.13112 9.76028 10.32460 11.23048 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027785 B = 0.002647 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.498071 B =10575.561052 C =10991.441177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.985 5.985 3 C 0.107 3.893 4 C 0.494 3.506 5 O -0.530 6.530 6 N -0.715 5.715 7 C 0.163 3.837 8 H 0.087 0.913 9 C -0.140 4.140 10 C 0.145 3.855 11 N -0.589 5.589 12 C -0.255 4.255 13 H 0.068 0.932 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.904 3.096 17 H -0.290 1.290 18 H -0.284 1.284 19 H -0.282 1.282 20 C 0.148 3.852 21 C 0.073 3.927 22 H 0.051 0.949 23 O -0.573 6.573 24 S 2.610 3.390 25 C -0.677 4.677 26 O -0.948 6.948 27 O -0.944 6.944 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.396 0.604 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.023 0.977 37 H 0.060 0.940 38 H 0.255 0.745 39 H 0.093 0.907 40 H 0.029 0.971 41 H 0.375 0.625 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.029 -11.349 21.479 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.822 5.822 3 C -0.023 4.023 4 C 0.277 3.723 5 O -0.405 6.405 6 N -0.366 5.366 7 C 0.059 3.941 8 H 0.105 0.895 9 C -0.180 4.180 10 C 0.018 3.982 11 N -0.313 5.313 12 C -0.385 4.385 13 H 0.086 0.914 14 C -0.197 4.197 15 N -0.547 5.547 16 Si 0.734 3.266 17 H -0.216 1.216 18 H -0.210 1.210 19 H -0.208 1.208 20 C 0.021 3.979 21 C 0.012 3.988 22 H 0.069 0.931 23 O -0.378 6.378 24 S 2.701 3.299 25 C -0.826 4.826 26 O -0.939 6.939 27 O -0.934 6.934 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.229 0.771 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.047 0.953 41 H 0.222 0.778 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.368 -12.766 20.035 24.355 hybrid contribution 0.990 1.707 0.786 2.124 sum -4.378 -11.058 20.821 23.978 Atomic orbital electron populations 1.21495 0.77654 1.02371 1.03359 1.57105 1.15508 1.20080 1.89460 1.21140 0.98473 0.87103 0.95594 1.20974 0.78341 0.81331 0.91623 1.90707 1.47815 1.56163 1.45840 1.46063 1.57492 1.23140 1.09904 1.20969 0.99668 0.91846 0.81574 0.89506 1.22415 0.96772 0.99778 0.99081 1.20944 0.99516 0.85505 0.92226 1.43993 1.26909 0.99322 1.61091 1.19178 0.89802 0.98697 1.30784 0.91393 1.25072 0.96210 0.99851 0.98518 1.70023 1.18187 1.19103 1.47372 0.86340 0.81958 0.80056 0.78256 1.21611 1.21009 1.20775 1.21319 0.91310 0.98705 0.86569 1.22890 0.87102 0.91472 0.97336 0.93076 1.86406 1.45273 1.24531 1.81581 1.05106 0.74166 0.73302 0.77300 1.30633 1.11626 1.12093 1.28250 1.93612 1.64632 1.62455 1.73162 1.93643 1.44106 1.82638 1.72983 0.91494 0.91105 0.91027 0.87394 0.87290 0.77068 0.91573 0.91999 0.95860 0.92101 0.93459 0.88867 0.95340 0.77807 0.85461 0.85429 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 10.22 59.85 0.61 1.40 16 2 N -0.98 -9.35 2.61 -123.05 -0.32 -9.67 16 3 C 0.11 0.97 5.76 -5.20 -0.03 0.94 16 4 C 0.49 7.35 7.86 -10.99 -0.09 7.26 16 5 O -0.53 -10.32 16.08 5.56 0.09 -10.23 16 6 N -0.72 -10.39 4.92 -53.77 -0.26 -10.66 16 7 C 0.16 2.99 2.12 -67.89 -0.14 2.84 16 8 H 0.09 1.84 7.57 -51.93 -0.39 1.45 16 9 C -0.14 -2.65 5.65 -26.61 -0.15 -2.80 16 10 C 0.14 3.16 6.52 -3.71 -0.02 3.13 16 11 N -0.59 -14.60 3.00 -172.58 -0.52 -15.12 16 12 C -0.26 -6.87 9.58 -15.06 -0.14 -7.02 16 13 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 14 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 15 N -0.90 -25.61 11.19 55.49 0.62 -24.99 16 16 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.15 3.43 4.91 -3.93 -0.02 3.41 16 21 C 0.07 1.34 3.13 -26.83 -0.08 1.26 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 23 O -0.57 -9.44 13.16 -35.23 -0.46 -9.90 16 24 S 2.61 26.19 5.96 -107.50 -0.64 25.55 16 25 C -0.68 -3.05 10.99 101.05 1.11 -1.94 16 26 O -0.95 -12.91 17.09 -57.54 -0.98 -13.90 16 27 O -0.94 -13.23 16.99 -57.54 -0.98 -14.21 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.42 7.79 -51.93 -0.40 0.01 16 30 H 0.07 0.41 7.94 -51.93 -0.41 0.00 16 31 H 0.11 0.71 7.61 -51.93 -0.40 0.31 16 32 H 0.11 0.61 7.96 -51.93 -0.41 0.20 16 33 H 0.40 4.49 8.60 -40.82 -0.35 4.14 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 1.29 7.93 -51.93 -0.41 0.87 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 39 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.38 4.92 9.08 45.56 0.41 5.34 16 42 H 0.13 0.36 8.14 -51.92 -0.42 -0.07 16 43 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -38.62 373.57 -7.94 -46.56 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.04 Total: 6.33 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 0.95 Total: 8.45 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.48 Total: -60.43 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -2.33 Total: -48.24 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 26.19 SS G_CDS: -0.64 Total: 25.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.62 -7.94 -46.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099860876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.600 kcal (2) G-P(sol) polarization free energy of solvation -38.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds