Wall clock time and date at job start Tue Mar 31 2020 18:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00191 * 2 1 4 4 C 1.50698 * 109.47136 * 85.00006 * 3 2 1 5 5 O 1.21284 * 120.00005 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99859 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99814 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46166 * 325.02482 * 7 6 4 9 9 C 1.53039 * 109.46196 * 84.99588 * 7 6 4 10 10 C 1.53189 * 109.31458 * 181.38540 * 9 7 6 11 11 N 1.46930 * 108.77394 * 305.36517 * 10 9 7 12 12 C 1.36941 * 120.62921 * 233.58544 * 11 10 9 13 13 H 1.08001 * 119.99840 * 27.70078 * 12 11 10 14 14 C 1.38808 * 119.99743 * 207.69585 * 12 11 10 15 15 N 1.31615 * 119.99919 * 17.36296 * 14 12 11 16 16 Si 1.86803 * 119.99890 * 197.35495 * 14 12 11 17 17 H 1.48502 * 109.46880 * 60.00728 * 16 14 12 18 18 H 1.48501 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47242 * 300.00464 * 16 14 12 20 20 C 1.46926 * 118.73909 * 53.61074 * 11 10 9 21 21 C 1.53037 * 109.45998 * 205.06542 * 7 6 4 22 22 H 1.09001 * 109.49949 * 58.66294 * 21 7 6 23 23 O 1.42905 * 109.49823 * 298.56650 * 21 7 6 24 24 S 1.65596 * 120.00138 * 179.97438 * 2 1 3 25 25 C 1.81401 * 104.45332 * 270.00299 * 24 2 1 26 26 O 1.42102 * 104.27744 * 26.07156 * 24 2 1 27 27 O 1.42099 * 104.28208 * 153.93148 * 24 2 1 28 28 H 1.09001 * 109.46861 * 90.00169 * 1 2 3 29 29 H 1.08995 * 109.47438 * 210.00227 * 1 2 3 30 30 H 1.09001 * 109.47060 * 330.00213 * 1 2 3 31 31 H 1.08999 * 109.46885 * 324.99987 * 3 2 1 32 32 H 1.08998 * 109.47367 * 204.99698 * 3 2 1 33 33 H 0.97001 * 120.00115 * 359.97438 * 6 4 3 34 34 H 1.09001 * 109.49524 * 61.43301 * 9 7 6 35 35 H 1.08999 * 109.50028 * 301.33989 * 9 7 6 36 36 H 1.08999 * 109.58397 * 185.58275 * 10 9 7 37 37 H 1.08994 * 109.59045 * 65.15427 * 10 9 7 38 38 H 0.97007 * 119.99487 * 179.97438 * 15 14 12 39 39 H 1.08996 * 109.58752 * 66.17390 * 20 11 10 40 40 H 1.08998 * 109.58713 * 186.60679 * 20 11 10 41 41 H 0.96696 * 114.00528 * 180.16224 * 23 21 7 42 42 H 1.09000 * 109.47045 * 59.99522 * 25 24 2 43 43 H 1.08996 * 109.47568 * 179.97438 * 25 24 2 44 44 H 1.08999 * 109.47068 * 300.00307 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 1.4154 5 8 1.8774 1.1236 2.3337 6 7 2.9850 2.9242 1.6606 7 6 3.1245 3.4076 3.0366 8 1 2.2327 3.1452 3.6058 9 6 4.3508 2.7593 3.6830 10 6 4.4736 3.2403 5.1322 11 7 4.4916 4.7095 5.1429 12 6 5.5015 5.3903 5.7687 13 1 6.4787 4.9401 5.8631 14 6 5.2693 6.6591 6.2817 15 7 4.0358 7.0729 6.4803 16 14 6.7075 7.7789 6.6904 17 1 7.5047 8.0288 5.4626 18 1 6.1959 9.0685 7.2199 19 1 7.5654 7.1295 7.7139 20 6 3.4051 5.4342 4.4697 21 6 3.2943 4.9285 3.0279 22 1 2.4312 5.3882 2.5465 23 8 4.4810 5.2718 2.3096 24 16 2.2930 -1.4341 0.0006 25 6 2.5193 -1.8254 1.7574 26 8 1.3970 -2.3564 -0.6042 27 8 3.5395 -1.1194 -0.6046 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6502 2.0043 -0.5894 32 1 3.1858 1.1177 -0.4342 33 1 3.3559 3.4379 0.9262 34 1 5.2461 3.0415 3.1289 35 1 4.2398 1.6751 3.6677 36 1 5.3985 2.8604 5.5661 37 1 3.6220 2.8811 5.7099 38 1 3.8736 7.9595 6.8392 39 1 2.4663 5.2538 4.9933 40 1 3.6250 6.5018 4.4666 41 1 4.6533 6.2223 2.2659 42 1 1.5451 -1.9178 2.2375 43 1 3.0618 -2.7659 1.8533 44 1 3.0865 -1.0278 2.2372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099860878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:01 Heat of formation + Delta-G solvation = -119.381533 kcal Electronic energy + Delta-G solvation = -28469.041852 eV Core-core repulsion = 24357.022203 eV Total energy + Delta-G solvation = -4112.019649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.00568 -38.17303 -37.37962 -36.29620 -35.89932 -34.85537 -34.36596 -32.20172 -30.00894 -29.55190 -29.18927 -28.45768 -25.73690 -24.70612 -22.49921 -21.91626 -20.42885 -19.58969 -19.04889 -18.00515 -17.57126 -17.11825 -16.77937 -16.27416 -15.99176 -15.50595 -15.15445 -14.89798 -14.64417 -14.35157 -13.93766 -13.83473 -13.60124 -13.41364 -13.27501 -13.21126 -13.01760 -12.80945 -12.54516 -12.32644 -12.21833 -12.07588 -11.87359 -11.75385 -11.31208 -11.25538 -11.21779 -10.83732 -10.65302 -10.53754 -10.36974 -10.14459 -10.11869 -9.76923 -9.32347 -9.11684 -8.79969 -8.55032 -6.74595 -5.87014 -3.27631 0.04350 2.24658 2.57635 3.24339 3.34172 3.39857 3.41566 3.62808 3.92016 4.30089 4.43392 4.65045 4.71828 4.80707 4.84550 5.00678 5.07012 5.23301 5.31386 5.33684 5.39419 5.49150 5.51764 5.60553 5.69005 5.87190 5.96192 6.08422 6.13959 6.18792 6.37387 6.47103 6.71973 6.75964 6.90966 7.09967 7.36266 7.60705 7.72962 8.16862 8.24368 8.37170 9.12386 9.75409 10.31825 11.21806 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029969 B = 0.002657 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.089359 B =10535.401392 C =10732.365063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.983 5.983 3 C 0.095 3.905 4 C 0.483 3.517 5 O -0.540 6.540 6 N -0.714 5.714 7 C 0.162 3.838 8 H 0.091 0.909 9 C -0.137 4.137 10 C 0.148 3.852 11 N -0.583 5.583 12 C -0.245 4.245 13 H 0.065 0.935 14 C 0.000 4.000 15 N -0.907 5.907 16 Si 0.904 3.096 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.283 1.283 20 C 0.145 3.855 21 C 0.073 3.927 22 H 0.043 0.957 23 O -0.560 6.560 24 S 2.612 3.388 25 C -0.660 4.660 26 O -0.957 6.957 27 O -0.958 6.958 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.404 0.596 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.019 0.981 38 H 0.254 0.746 39 H 0.027 0.973 40 H 0.096 0.904 41 H 0.376 0.624 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.647 -10.911 -13.843 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.819 5.819 3 C -0.035 4.035 4 C 0.267 3.733 5 O -0.418 6.418 6 N -0.365 5.365 7 C 0.058 3.942 8 H 0.109 0.891 9 C -0.177 4.177 10 C 0.021 3.979 11 N -0.305 5.305 12 C -0.375 4.375 13 H 0.083 0.917 14 C -0.198 4.198 15 N -0.552 5.552 16 Si 0.733 3.267 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.209 1.209 20 C 0.018 3.982 21 C 0.012 3.988 22 H 0.061 0.939 23 O -0.365 6.365 24 S 2.705 3.295 25 C -0.811 4.811 26 O -0.948 6.948 27 O -0.949 6.949 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.238 0.762 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.114 0.886 41 H 0.223 0.777 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.749 -12.335 -13.917 19.784 hybrid contribution 0.659 1.771 0.859 2.075 sum -6.090 -10.564 -13.058 17.866 Atomic orbital electron populations 1.21445 0.77634 1.03484 1.01951 1.57070 1.15451 1.20020 1.89334 1.21308 1.00170 0.87266 0.94750 1.21337 0.78351 0.81703 0.91918 1.90684 1.48559 1.56466 1.46073 1.46241 1.56523 1.23179 1.10528 1.21034 0.99420 0.92476 0.81272 0.89139 1.22311 0.97889 0.98316 0.99191 1.20888 0.99063 0.85707 0.92225 1.43871 1.26609 0.99133 1.60855 1.19145 0.89769 0.98715 1.29825 0.91679 1.25011 0.96157 0.99841 0.98799 1.70009 1.18141 1.19229 1.47857 0.86349 0.82011 0.80048 0.78247 1.21000 1.21719 1.20909 1.21442 0.91213 0.98944 0.86591 1.22831 0.86427 0.93271 0.96300 0.93893 1.86342 1.44945 1.29015 1.76213 1.04888 0.73730 0.73080 0.77814 1.30443 1.12228 1.11787 1.26612 1.93601 1.64734 1.62248 1.74211 1.93592 1.44031 1.82950 1.74307 0.92176 0.91004 0.90841 0.86895 0.85797 0.76155 0.91051 0.93029 0.92444 0.96329 0.93563 0.95517 0.88592 0.77729 0.85220 0.85949 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 10.20 59.85 0.61 1.39 16 2 N -0.98 -9.17 2.61 -123.05 -0.32 -9.49 16 3 C 0.09 0.84 6.12 -5.19 -0.03 0.80 16 4 C 0.48 5.84 7.86 -10.99 -0.09 5.76 16 5 O -0.54 -7.97 14.67 5.55 0.08 -7.88 16 6 N -0.71 -9.00 5.05 -53.76 -0.27 -9.27 16 7 C 0.16 2.61 2.20 -67.89 -0.15 2.46 16 8 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 9 C -0.14 -2.42 5.51 -26.61 -0.15 -2.57 16 10 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 11 N -0.58 -13.85 2.94 -172.32 -0.51 -14.36 16 12 C -0.24 -6.46 9.59 -15.06 -0.14 -6.60 16 13 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 14 C 0.00 0.00 4.91 -17.43 -0.09 -0.09 16 15 N -0.91 -25.08 11.19 55.49 0.62 -24.46 16 16 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.15 3.15 4.95 -3.71 -0.02 3.14 16 21 C 0.07 1.23 3.38 -26.61 -0.09 1.14 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 23 O -0.56 -9.20 12.09 -35.23 -0.43 -9.62 16 24 S 2.61 26.79 6.02 -107.50 -0.65 26.15 16 25 C -0.66 -5.87 10.52 101.05 1.06 -4.81 16 26 O -0.96 -11.97 17.09 -57.54 -0.98 -12.95 16 27 O -0.96 -12.32 16.53 -57.54 -0.95 -13.27 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.51 7.79 -51.93 -0.40 0.11 16 30 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 31 H 0.11 0.68 8.11 -51.93 -0.42 0.26 16 32 H 0.12 1.04 6.82 -51.93 -0.35 0.68 16 33 H 0.40 4.32 8.26 -40.82 -0.34 3.99 16 34 H 0.07 1.35 7.61 -51.93 -0.40 0.95 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 2.30 6.04 -51.93 -0.31 1.99 16 41 H 0.38 5.39 9.08 45.56 0.41 5.80 16 42 H 0.13 1.05 8.14 -51.92 -0.42 0.63 16 43 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.13 1.39 7.22 -51.92 -0.37 1.01 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -34.24 368.52 -7.90 -42.14 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.92 Total: 7.89 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 0.90 Total: 3.66 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.48 Total: -57.57 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -2.28 Total: -43.73 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Atomic # 16 Polarization: 26.79 SS G_CDS: -0.65 Total: 26.15 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.24 -7.90 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099860878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.244 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds