Wall clock time and date at job start Tue Mar 31 2020 18:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00191 * 2 1 4 4 C 1.50698 * 109.47136 * 85.00006 * 3 2 1 5 5 O 1.21284 * 120.00005 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99859 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99814 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46166 * 325.02482 * 7 6 4 9 9 C 1.53039 * 109.46196 * 84.99588 * 7 6 4 10 10 C 1.53189 * 109.31458 * 181.38540 * 9 7 6 11 11 N 1.46930 * 108.77394 * 305.36517 * 10 9 7 12 12 C 1.36941 * 120.62921 * 233.58544 * 11 10 9 13 13 H 1.08001 * 119.99840 * 27.70078 * 12 11 10 14 14 C 1.38808 * 119.99743 * 207.69585 * 12 11 10 15 15 N 1.31615 * 119.99919 * 17.36296 * 14 12 11 16 16 Si 1.86803 * 119.99890 * 197.35495 * 14 12 11 17 17 H 1.48502 * 109.46880 * 60.00728 * 16 14 12 18 18 H 1.48501 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47242 * 300.00464 * 16 14 12 20 20 C 1.46926 * 118.73909 * 53.61074 * 11 10 9 21 21 C 1.53037 * 109.45998 * 205.06542 * 7 6 4 22 22 H 1.09001 * 109.49949 * 58.66294 * 21 7 6 23 23 O 1.42905 * 109.49823 * 298.56650 * 21 7 6 24 24 S 1.65596 * 120.00138 * 179.97438 * 2 1 3 25 25 C 1.81401 * 104.45332 * 270.00299 * 24 2 1 26 26 O 1.42102 * 104.27744 * 26.07156 * 24 2 1 27 27 O 1.42099 * 104.28208 * 153.93148 * 24 2 1 28 28 H 1.09001 * 109.46861 * 90.00169 * 1 2 3 29 29 H 1.08995 * 109.47438 * 210.00227 * 1 2 3 30 30 H 1.09001 * 109.47060 * 330.00213 * 1 2 3 31 31 H 1.08999 * 109.46885 * 324.99987 * 3 2 1 32 32 H 1.08998 * 109.47367 * 204.99698 * 3 2 1 33 33 H 0.97001 * 120.00115 * 359.97438 * 6 4 3 34 34 H 1.09001 * 109.49524 * 61.43301 * 9 7 6 35 35 H 1.08999 * 109.50028 * 301.33989 * 9 7 6 36 36 H 1.08999 * 109.58397 * 185.58275 * 10 9 7 37 37 H 1.08994 * 109.59045 * 65.15427 * 10 9 7 38 38 H 0.97007 * 119.99487 * 179.97438 * 15 14 12 39 39 H 1.08996 * 109.58752 * 66.17390 * 20 11 10 40 40 H 1.08998 * 109.58713 * 186.60679 * 20 11 10 41 41 H 0.96696 * 114.00528 * 180.16224 * 23 21 7 42 42 H 1.09000 * 109.47045 * 59.99522 * 25 24 2 43 43 H 1.08996 * 109.47568 * 179.97438 * 25 24 2 44 44 H 1.08999 * 109.47068 * 300.00307 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 1.4154 5 8 1.8774 1.1236 2.3337 6 7 2.9850 2.9242 1.6606 7 6 3.1245 3.4076 3.0366 8 1 2.2327 3.1452 3.6058 9 6 4.3508 2.7593 3.6830 10 6 4.4736 3.2403 5.1322 11 7 4.4916 4.7095 5.1429 12 6 5.5015 5.3903 5.7687 13 1 6.4787 4.9401 5.8631 14 6 5.2693 6.6591 6.2817 15 7 4.0358 7.0729 6.4803 16 14 6.7075 7.7789 6.6904 17 1 7.5047 8.0288 5.4626 18 1 6.1959 9.0685 7.2199 19 1 7.5654 7.1295 7.7139 20 6 3.4051 5.4342 4.4697 21 6 3.2943 4.9285 3.0279 22 1 2.4312 5.3882 2.5465 23 8 4.4810 5.2718 2.3096 24 16 2.2930 -1.4341 0.0006 25 6 2.5193 -1.8254 1.7574 26 8 1.3970 -2.3564 -0.6042 27 8 3.5395 -1.1194 -0.6046 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6502 2.0043 -0.5894 32 1 3.1858 1.1177 -0.4342 33 1 3.3559 3.4379 0.9262 34 1 5.2461 3.0415 3.1289 35 1 4.2398 1.6751 3.6677 36 1 5.3985 2.8604 5.5661 37 1 3.6220 2.8811 5.7099 38 1 3.8736 7.9595 6.8392 39 1 2.4663 5.2538 4.9933 40 1 3.6250 6.5018 4.4666 41 1 4.6533 6.2223 2.2659 42 1 1.5451 -1.9178 2.2375 43 1 3.0618 -2.7659 1.8533 44 1 3.0865 -1.0278 2.2372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099860878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:00 Heat of formation + Delta-G solvation = -148.672669 kcal Electronic energy + Delta-G solvation = -28470.312011 eV Core-core repulsion = 24357.022203 eV Total energy + Delta-G solvation = -4113.289808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.10103 -39.52692 -38.26867 -37.16884 -36.74620 -36.44328 -35.59144 -33.89928 -31.45803 -30.74304 -30.28062 -29.44953 -27.04856 -25.90930 -24.05288 -23.48007 -21.48476 -21.02278 -19.92096 -19.16099 -18.77676 -18.24124 -17.69799 -17.26848 -17.13157 -17.01388 -16.64603 -16.01443 -15.73093 -15.48676 -15.39542 -15.17114 -15.01818 -14.53992 -14.25980 -14.08345 -13.92572 -13.80040 -13.66216 -13.62190 -13.40960 -13.23145 -13.12834 -12.75983 -12.63053 -12.59713 -12.51566 -12.37556 -12.21498 -12.05814 -12.00696 -11.81971 -11.43407 -11.15929 -10.72131 -10.57074 -10.00084 -9.92108 -8.66852 -7.87429 -5.30936 -0.73768 1.48502 1.49846 1.50749 1.57998 1.63852 2.25249 2.52354 2.84298 3.12232 3.25744 3.43185 3.62778 3.65814 3.85379 3.94502 4.05234 4.08109 4.12118 4.36237 4.38405 4.43335 4.47697 4.62435 4.75892 4.78152 4.88015 4.92266 4.96459 5.01771 5.03901 5.09108 5.20324 5.41327 5.46274 5.55511 5.58630 5.65803 6.37621 6.64437 6.94045 7.15775 7.28450 7.84062 8.36052 9.18547 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029969 B = 0.002657 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.089359 B =10535.401392 C =10732.365063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.985 5.985 3 C 0.099 3.901 4 C 0.483 3.517 5 O -0.567 6.567 6 N -0.706 5.706 7 C 0.170 3.830 8 H 0.077 0.923 9 C -0.122 4.122 10 C 0.144 3.856 11 N -0.599 5.599 12 C -0.256 4.256 13 H 0.060 0.940 14 C -0.045 4.045 15 N -0.935 5.935 16 Si 0.965 3.035 17 H -0.276 1.276 18 H -0.295 1.295 19 H -0.282 1.282 20 C 0.149 3.851 21 C 0.091 3.909 22 H 0.071 0.929 23 O -0.561 6.561 24 S 2.625 3.375 25 C -0.655 4.655 26 O -0.982 6.982 27 O -0.986 6.986 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.416 0.584 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.011 0.989 38 H 0.251 0.749 39 H 0.003 0.997 40 H 0.071 0.929 41 H 0.386 0.614 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.652 -11.157 -15.490 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.821 5.821 3 C -0.031 4.031 4 C 0.269 3.731 5 O -0.446 6.446 6 N -0.358 5.358 7 C 0.065 3.935 8 H 0.095 0.905 9 C -0.162 4.162 10 C 0.018 3.982 11 N -0.322 5.322 12 C -0.387 4.387 13 H 0.078 0.922 14 C -0.241 4.241 15 N -0.581 5.581 16 Si 0.794 3.206 17 H -0.202 1.202 18 H -0.221 1.221 19 H -0.209 1.209 20 C 0.022 3.978 21 C 0.029 3.971 22 H 0.088 0.912 23 O -0.368 6.368 24 S 2.720 3.280 25 C -0.807 4.807 26 O -0.972 6.972 27 O -0.976 6.976 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.167 0.833 32 H 0.150 0.850 33 H 0.253 0.747 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.021 0.979 40 H 0.089 0.911 41 H 0.234 0.766 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.752 -12.593 -15.625 21.173 hybrid contribution 0.629 1.789 1.439 2.380 sum -6.123 -10.804 -14.186 18.854 Atomic orbital electron populations 1.21625 0.76669 1.03941 1.02979 1.57003 1.16131 1.19765 1.89213 1.21443 1.01289 0.87726 0.92605 1.21951 0.77228 0.80895 0.93075 1.90680 1.49514 1.57100 1.47313 1.46011 1.56911 1.23722 1.09181 1.20664 0.97922 0.91836 0.83124 0.90487 1.22091 0.98393 0.98828 0.96849 1.20972 0.98484 0.84348 0.94397 1.44099 1.26510 1.00287 1.61261 1.19387 0.90288 0.99210 1.29770 0.92192 1.25665 0.98246 1.00971 0.99177 1.70154 1.19777 1.19219 1.48935 0.85378 0.79244 0.77922 0.78059 1.20152 1.22080 1.20857 1.21338 0.89426 0.97597 0.89413 1.22510 0.87638 0.93833 0.93085 0.91158 1.86320 1.44787 1.30134 1.75550 1.04336 0.72806 0.72834 0.78005 1.30380 1.12925 1.12465 1.24912 1.93566 1.65201 1.63203 1.75277 1.93551 1.45246 1.83388 1.75461 0.90889 0.90722 0.90313 0.83347 0.84969 0.74685 0.91818 0.92064 0.92924 0.97087 0.94016 0.97878 0.91080 0.76557 0.84348 0.83969 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 10.20 127.77 1.30 2.53 16 2 N -0.99 -16.16 2.61 -543.23 -1.42 -17.57 16 3 C 0.10 1.45 6.12 85.63 0.52 1.97 16 4 C 0.48 10.51 7.86 87.66 0.69 11.20 16 5 O -0.57 -15.73 14.67 -3.04 -0.04 -15.77 16 6 N -0.71 -16.02 5.05 -442.40 -2.23 -18.25 16 7 C 0.17 5.23 2.20 45.02 0.10 5.33 16 8 H 0.08 2.64 7.58 -2.39 -0.02 2.62 16 9 C -0.12 -4.19 5.51 30.67 0.17 -4.02 16 10 C 0.14 6.04 6.52 86.36 0.56 6.60 16 11 N -0.60 -28.81 2.94 -699.11 -2.05 -30.87 16 12 C -0.26 -13.66 9.59 84.03 0.81 -12.85 16 13 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16 14 C -0.05 -2.42 4.91 84.86 0.42 -2.00 16 15 N -0.93 -52.58 11.19 21.65 0.24 -52.34 16 16 Si 0.97 43.27 29.59 68.60 2.03 45.30 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 C 0.15 6.54 4.95 86.36 0.43 6.97 16 21 C 0.09 2.92 3.38 30.67 0.10 3.03 16 22 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 23 O -0.56 -17.37 12.09 -148.98 -1.80 -19.17 16 24 S 2.63 49.98 6.02 -56.49 -0.34 49.64 16 25 C -0.65 -10.59 10.52 113.37 1.19 -9.40 16 26 O -0.98 -23.35 17.09 -127.65 -2.18 -25.53 16 27 O -0.99 -24.02 16.53 -127.65 -2.11 -26.13 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.94 7.79 -2.39 -0.02 0.92 16 30 H 0.08 0.97 8.07 -2.39 -0.02 0.95 16 31 H 0.15 1.17 8.11 -2.39 -0.02 1.15 16 32 H 0.13 1.82 6.82 -2.39 -0.02 1.81 16 33 H 0.42 7.56 8.26 -92.71 -0.77 6.79 16 34 H 0.06 2.31 7.61 -2.39 -0.02 2.29 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 2.19 7.93 -2.39 -0.02 2.18 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.25 13.73 8.31 -92.70 -0.77 12.96 16 39 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.07 3.47 6.04 -2.39 -0.01 3.46 16 41 H 0.39 10.39 9.08 -74.06 -0.67 9.72 16 42 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.12 2.38 7.22 -2.39 -0.02 2.36 16 Total: -1.00 -73.61 368.52 -4.02 -77.63 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.41 Total: 23.71 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 6.29 Total: 9.35 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -5.46 Total: -119.03 kcal Atomic # 8 Polarization: -80.46 SS G_CDS: -6.14 Total: -86.60 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 49.98 SS G_CDS: -0.34 Total: 49.64 kcal Total: -73.61 -4.02 -77.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099860878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.038 kcal (2) G-P(sol) polarization free energy of solvation -73.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds