Wall clock time and date at job start Tue Mar 31 2020 19:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35910 * 116.99834 * 2 1 4 4 C 1.38762 * 119.91676 * 0.02829 * 3 2 1 5 5 C 1.37862 * 120.16662 * 179.97438 * 4 3 2 6 6 C 1.39777 * 119.98454 * 0.02562 * 5 4 3 7 7 C 1.47337 * 120.08874 * 179.97438 * 6 5 4 8 8 N 1.29932 * 119.99405 * 359.97438 * 7 6 5 9 9 N 1.40105 * 119.99695 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99854 * 180.02562 * 9 8 7 11 11 O 1.21440 * 120.00189 * 0.02562 * 10 9 8 12 12 C 1.49180 * 119.99549 * 180.02562 * 10 9 8 13 13 N 1.34775 * 119.99549 * 180.02562 * 12 10 9 14 14 O 1.21378 * 120.00064 * 359.97438 * 12 10 9 15 15 C 1.39789 * 119.82816 * 359.75491 * 6 5 4 16 16 C 1.38199 * 119.83654 * 0.47840 * 15 6 5 17 17 O 1.35995 * 119.99597 * 179.79769 * 16 15 6 18 18 C 1.42903 * 116.99587 * 359.72226 * 17 16 15 19 19 C 1.53000 * 109.46726 * 180.02562 * 18 17 16 20 20 C 1.50706 * 109.46735 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99928 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99611 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00327 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99743 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46999 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00025 * 24 22 20 27 27 H 1.48498 * 109.46942 * 239.99938 * 24 22 20 28 28 H 1.09007 * 109.46959 * 299.99537 * 1 2 3 29 29 H 1.08994 * 109.47346 * 59.99726 * 1 2 3 30 30 H 1.09006 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.91637 * 359.97240 * 4 3 2 32 32 H 1.07994 * 120.00886 * 180.02562 * 5 4 3 33 33 H 1.07990 * 120.00217 * 180.02562 * 7 6 5 34 34 H 0.97000 * 119.99657 * 0.02562 * 9 8 7 35 35 H 0.97000 * 120.00489 * 359.97438 * 13 12 10 36 36 H 0.97002 * 120.00160 * 179.97438 * 13 12 10 37 37 H 1.08001 * 120.07891 * 180.27792 * 15 6 5 38 38 H 1.09002 * 109.47382 * 60.00075 * 18 17 16 39 39 H 1.09001 * 109.46938 * 300.00061 * 18 17 16 40 40 H 1.09001 * 109.47194 * 299.99575 * 19 18 17 41 41 H 1.08992 * 109.47399 * 59.99748 * 19 18 17 42 42 H 0.97000 * 120.00354 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2885 2.3736 0.0006 5 6 1.9090 3.6047 0.0011 6 6 3.3046 3.6836 0.0005 7 6 3.9701 4.9981 0.0005 8 7 3.2595 6.0859 0.0006 9 7 3.8923 7.3359 0.0011 10 6 3.1553 8.4643 0.0017 11 8 1.9427 8.3976 0.0022 12 6 3.8291 9.7952 0.0017 13 7 3.0921 10.9236 0.0028 14 8 5.0411 9.8619 0.0017 15 6 4.0672 2.5121 0.0046 16 6 3.4377 1.2818 -0.0009 17 8 4.1765 0.1401 -0.0011 18 6 5.5980 0.2872 -0.0017 19 6 6.2537 -1.0951 -0.0026 20 6 7.7527 -0.9400 -0.0026 21 1 8.1935 0.0459 -0.0025 22 6 8.5614 -2.0568 -0.0028 23 7 8.0245 -3.2573 -0.0024 24 14 10.4195 -1.8645 -0.0035 25 1 10.7677 -0.4209 -0.0032 26 1 10.9843 -2.5097 1.2089 27 1 10.9834 -2.5100 -1.2162 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2102 2.3139 0.0006 32 1 1.3170 4.5079 0.0020 33 1 5.0484 5.0575 -0.0003 34 1 4.8608 7.3892 0.0011 35 1 2.1236 10.8704 0.0032 36 1 3.5302 11.7891 0.0032 37 1 5.1458 2.5684 0.0087 38 1 5.9069 0.8358 0.8881 39 1 5.9060 0.8357 -0.8919 40 1 5.9457 -1.6440 0.8874 41 1 5.9447 -1.6433 -0.8925 42 1 8.5934 -4.0430 -0.0021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115917473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:42 Heat of formation + Delta-G solvation = -78.189038 kcal Electronic energy + Delta-G solvation = -26839.075555 eV Core-core repulsion = 22593.398195 eV Total energy + Delta-G solvation = -4245.677360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95714 -40.40993 -38.85792 -38.26661 -37.58893 -36.30478 -34.31632 -33.41138 -32.71672 -30.70691 -30.25178 -29.16424 -27.34990 -25.75819 -25.05954 -23.53239 -22.51333 -21.05543 -20.87602 -20.53596 -19.26843 -18.35778 -17.94938 -17.10631 -17.03434 -16.52689 -16.30740 -16.09582 -15.92344 -15.75180 -15.04990 -14.73246 -14.68610 -14.62243 -14.53312 -14.49001 -13.97261 -13.22911 -12.75718 -12.54909 -12.34707 -12.26093 -12.17658 -11.91414 -11.56987 -11.22924 -11.15939 -10.92956 -10.88500 -10.60642 -10.59008 -10.47732 -10.23586 -9.90517 -9.67255 -9.55922 -9.28588 -8.54827 -8.44834 -7.54397 -6.10234 -4.14935 0.45738 1.02705 1.43704 1.58603 2.20013 2.81418 3.08275 3.26323 3.29542 3.33426 3.36526 3.71467 3.81607 3.97525 4.32964 4.39942 4.59163 4.86640 5.00548 5.12302 5.13128 5.20148 5.26247 5.36729 5.40451 5.46662 5.67017 5.88188 5.97285 6.01287 6.16792 6.22960 6.30219 6.34300 6.55461 6.61031 6.69465 6.87116 7.22266 7.36637 7.53520 7.65423 7.79919 7.81571 8.04989 8.23450 8.90989 9.49357 11.01247 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.002356 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.598983 B =11881.520970 C =14948.370605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.299 6.299 3 C 0.116 3.884 4 C -0.185 4.185 5 C -0.078 4.078 6 C -0.068 4.068 7 C 0.145 3.855 8 N -0.247 5.247 9 N -0.558 5.558 10 C 0.525 3.475 11 O -0.485 6.485 12 C 0.523 3.477 13 N -0.818 5.818 14 O -0.518 6.518 15 C -0.145 4.145 16 C 0.114 3.886 17 O -0.302 6.302 18 C 0.062 3.938 19 C 0.025 3.975 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.060 3.940 23 N -0.888 5.888 24 Si 0.898 3.102 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.398 0.602 35 H 0.416 0.584 36 H 0.414 0.586 37 H 0.145 0.855 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.798 22.551 0.013 26.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.211 6.211 3 C 0.068 3.932 4 C -0.204 4.204 5 C -0.098 4.098 6 C -0.071 4.071 7 C -0.064 4.064 8 N -0.051 5.051 9 N -0.301 5.301 10 C 0.305 3.695 11 O -0.357 6.357 12 C 0.299 3.701 13 N -0.384 5.384 14 O -0.393 6.393 15 C -0.166 4.166 16 C 0.067 3.933 17 O -0.215 6.215 18 C -0.012 4.012 19 C -0.012 4.012 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.142 4.142 23 N -0.526 5.526 24 Si 0.725 3.275 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.238 0.762 35 H 0.247 0.753 36 H 0.247 0.753 37 H 0.162 0.838 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.660 22.334 0.013 27.277 hybrid contribution 2.066 0.540 -0.001 2.135 sum -13.595 22.874 0.011 26.609 Atomic orbital electron populations 1.23087 0.78810 1.04025 1.01060 1.86246 1.20793 1.25859 1.88200 1.18594 0.89501 0.85193 0.99865 1.20962 0.99946 0.91244 1.08202 1.21010 0.93273 0.97403 0.98133 1.17869 0.92910 0.89128 1.07169 1.24563 0.97854 0.90747 0.93254 1.75107 1.24952 0.89722 1.15340 1.46499 1.09602 1.02770 1.71230 1.19755 0.87298 0.84114 0.78323 1.90808 1.13023 1.86884 1.44939 1.19775 0.87069 0.85812 0.77412 1.43460 1.12267 1.07735 1.74984 1.90865 1.13321 1.87446 1.47714 1.21196 1.00721 0.90002 1.04677 1.18213 0.88502 0.86968 0.99647 1.86316 1.21137 1.26733 1.87335 1.23377 0.74772 1.03432 0.99576 1.19121 0.94205 0.88866 0.99012 1.21000 0.90313 0.92908 1.52155 0.92316 1.24995 0.99108 0.95174 0.94969 1.69985 1.35356 0.97571 1.49716 0.86446 0.85036 0.78264 0.77709 1.19655 1.20870 1.20864 0.92737 0.92744 0.88196 0.84626 0.84612 0.85708 0.76186 0.75316 0.75255 0.83761 0.93057 0.93060 0.95317 0.95315 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.54 10.27 -34.15 -0.35 -4.89 16 3 C 0.12 1.74 6.71 -38.97 -0.26 1.48 16 4 C -0.18 -2.23 9.01 -39.53 -0.36 -2.58 16 5 C -0.08 -0.94 9.57 -39.14 -0.37 -1.31 16 6 C -0.07 -0.84 5.87 -105.04 -0.62 -1.45 16 7 C 0.14 1.54 10.75 -14.66 -0.16 1.38 16 8 N -0.25 -2.92 10.15 32.15 0.33 -2.59 16 9 N -0.56 -5.75 6.26 30.85 0.19 -5.56 16 10 C 0.52 5.45 8.00 -11.71 -0.09 5.36 16 11 O -0.49 -6.12 16.81 5.42 0.09 -6.03 16 12 C 0.52 4.35 8.15 -11.71 -0.10 4.25 16 13 N -0.82 -3.66 8.87 30.84 0.27 -3.38 16 14 O -0.52 -5.56 17.31 5.47 0.09 -5.47 16 15 C -0.14 -2.02 8.77 -39.02 -0.34 -2.36 16 16 C 0.11 1.91 6.69 -39.18 -0.26 1.64 16 17 O -0.30 -6.12 9.91 -34.41 -0.34 -6.46 16 18 C 0.06 1.28 4.68 37.16 0.17 1.46 16 19 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 20 C -0.53 -14.36 9.11 -34.44 -0.31 -14.67 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 24 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.05 0.43 7.65 -51.93 -0.40 0.04 16 29 H 0.05 0.43 7.65 -51.93 -0.40 0.04 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.14 1.25 6.27 -52.49 -0.33 0.92 16 32 H 0.14 1.55 7.54 -52.49 -0.40 1.16 16 33 H 0.13 0.98 8.02 -52.49 -0.42 0.56 16 34 H 0.40 3.30 8.12 -182.59 -1.48 1.82 16 35 H 0.42 1.33 8.30 -40.82 -0.34 0.99 16 36 H 0.41 0.98 8.93 -40.82 -0.36 0.61 16 37 H 0.14 1.84 6.29 -52.49 -0.33 1.51 16 38 H 0.05 0.98 7.65 -51.93 -0.40 0.58 16 39 H 0.05 0.98 7.67 -51.93 -0.40 0.58 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -35.50 376.21 -6.34 -41.85 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.06 Total: -0.14 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.96 Total: -3.50 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 1.53 Total: -37.02 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.51 Total: -22.84 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.50 -6.34 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115917473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.342 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds