Wall clock time and date at job start Tue Mar 31 2020 19:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35910 * 116.99834 * 2 1 4 4 C 1.38762 * 119.91676 * 0.02829 * 3 2 1 5 5 C 1.37862 * 120.16662 * 179.97438 * 4 3 2 6 6 C 1.39777 * 119.98454 * 0.02562 * 5 4 3 7 7 C 1.47337 * 120.08874 * 179.97438 * 6 5 4 8 8 N 1.29932 * 119.99405 * 359.97438 * 7 6 5 9 9 N 1.40105 * 119.99695 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99854 * 180.02562 * 9 8 7 11 11 O 1.21440 * 120.00189 * 0.02562 * 10 9 8 12 12 C 1.49180 * 119.99549 * 180.02562 * 10 9 8 13 13 N 1.34775 * 119.99549 * 180.02562 * 12 10 9 14 14 O 1.21378 * 120.00064 * 359.97438 * 12 10 9 15 15 C 1.39789 * 119.82816 * 359.75491 * 6 5 4 16 16 C 1.38199 * 119.83654 * 0.47840 * 15 6 5 17 17 O 1.35995 * 119.99597 * 179.79769 * 16 15 6 18 18 C 1.42903 * 116.99587 * 359.72226 * 17 16 15 19 19 C 1.53000 * 109.46726 * 180.02562 * 18 17 16 20 20 C 1.50706 * 109.46735 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99928 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99611 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00327 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99743 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46999 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00025 * 24 22 20 27 27 H 1.48498 * 109.46942 * 239.99938 * 24 22 20 28 28 H 1.09007 * 109.46959 * 299.99537 * 1 2 3 29 29 H 1.08994 * 109.47346 * 59.99726 * 1 2 3 30 30 H 1.09006 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.91637 * 359.97240 * 4 3 2 32 32 H 1.07994 * 120.00886 * 180.02562 * 5 4 3 33 33 H 1.07990 * 120.00217 * 180.02562 * 7 6 5 34 34 H 0.97000 * 119.99657 * 0.02562 * 9 8 7 35 35 H 0.97000 * 120.00489 * 359.97438 * 13 12 10 36 36 H 0.97002 * 120.00160 * 179.97438 * 13 12 10 37 37 H 1.08001 * 120.07891 * 180.27792 * 15 6 5 38 38 H 1.09002 * 109.47382 * 60.00075 * 18 17 16 39 39 H 1.09001 * 109.46938 * 300.00061 * 18 17 16 40 40 H 1.09001 * 109.47194 * 299.99575 * 19 18 17 41 41 H 1.08992 * 109.47399 * 59.99748 * 19 18 17 42 42 H 0.97000 * 120.00354 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2885 2.3736 0.0006 5 6 1.9090 3.6047 0.0011 6 6 3.3046 3.6836 0.0005 7 6 3.9701 4.9981 0.0005 8 7 3.2595 6.0859 0.0006 9 7 3.8923 7.3359 0.0011 10 6 3.1553 8.4643 0.0017 11 8 1.9427 8.3976 0.0022 12 6 3.8291 9.7952 0.0017 13 7 3.0921 10.9236 0.0028 14 8 5.0411 9.8619 0.0017 15 6 4.0672 2.5121 0.0046 16 6 3.4377 1.2818 -0.0009 17 8 4.1765 0.1401 -0.0011 18 6 5.5980 0.2872 -0.0017 19 6 6.2537 -1.0951 -0.0026 20 6 7.7527 -0.9400 -0.0026 21 1 8.1935 0.0459 -0.0025 22 6 8.5614 -2.0568 -0.0028 23 7 8.0245 -3.2573 -0.0024 24 14 10.4195 -1.8645 -0.0035 25 1 10.7677 -0.4209 -0.0032 26 1 10.9843 -2.5097 1.2089 27 1 10.9834 -2.5100 -1.2162 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2102 2.3139 0.0006 32 1 1.3170 4.5079 0.0020 33 1 5.0484 5.0575 -0.0003 34 1 4.8608 7.3892 0.0011 35 1 2.1236 10.8704 0.0032 36 1 3.5302 11.7891 0.0032 37 1 5.1458 2.5684 0.0087 38 1 5.9069 0.8358 0.8881 39 1 5.9060 0.8357 -0.8919 40 1 5.9457 -1.6440 0.8874 41 1 5.9447 -1.6433 -0.8925 42 1 8.5934 -4.0430 -0.0021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115917473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:41 Heat of formation + Delta-G solvation = -106.206811 kcal Electronic energy + Delta-G solvation = -26840.290497 eV Core-core repulsion = 22593.398195 eV Total energy + Delta-G solvation = -4246.892302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70195 -41.50969 -39.61659 -39.49065 -38.60474 -37.27161 -35.43859 -34.87783 -33.63479 -32.39160 -31.33920 -30.39625 -28.19361 -27.01853 -26.43624 -24.44704 -23.96264 -22.26474 -21.80557 -21.66077 -20.03147 -19.39932 -18.78639 -18.54629 -17.85990 -17.69975 -17.22629 -17.13380 -17.05095 -16.84985 -16.47779 -16.32466 -15.76187 -15.60942 -15.37078 -15.23631 -15.09066 -14.33408 -14.30754 -13.97394 -13.78911 -13.32963 -13.08681 -13.04053 -13.00500 -12.66636 -12.57673 -12.36153 -12.11455 -12.04675 -11.57833 -11.55265 -11.43590 -11.33065 -11.01606 -10.98966 -10.59531 -10.44757 -9.60215 -8.66315 -8.22984 -6.36142 -0.43921 0.22712 0.37763 0.85919 1.30520 1.43592 1.44275 1.57584 2.06664 2.28061 2.36780 2.43890 2.53012 2.78599 3.11718 3.40306 3.52094 3.73162 4.00467 4.02411 4.20776 4.24155 4.35719 4.40367 4.41313 4.44986 4.51784 4.70317 4.77361 4.81280 5.12970 5.23988 5.35664 5.37934 5.40840 5.53081 5.62917 5.67834 5.74865 5.88725 6.09091 6.17192 6.23801 6.69614 6.79822 6.87027 7.03427 7.33874 8.90337 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.002356 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.598983 B =11881.520970 C =14948.370605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.334 6.334 3 C 0.102 3.898 4 C -0.173 4.173 5 C -0.072 4.072 6 C -0.067 4.067 7 C 0.150 3.850 8 N -0.269 5.269 9 N -0.555 5.555 10 C 0.523 3.477 11 O -0.512 6.512 12 C 0.529 3.471 13 N -0.793 5.793 14 O -0.545 6.545 15 C -0.137 4.137 16 C 0.072 3.928 17 O -0.332 6.332 18 C 0.080 3.920 19 C 0.027 3.973 20 C -0.540 4.540 21 H 0.075 0.925 22 C -0.002 4.002 23 N -0.932 5.932 24 Si 0.975 3.025 25 H -0.255 1.255 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.167 0.833 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.409 0.591 35 H 0.425 0.575 36 H 0.428 0.572 37 H 0.155 0.845 38 H 0.066 0.934 39 H 0.066 0.934 40 H -0.004 1.004 41 H -0.004 1.004 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.711 25.526 0.014 29.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.248 6.248 3 C 0.055 3.945 4 C -0.191 4.191 5 C -0.093 4.093 6 C -0.070 4.070 7 C -0.059 4.059 8 N -0.073 5.073 9 N -0.298 5.298 10 C 0.305 3.695 11 O -0.385 6.385 12 C 0.305 3.695 13 N -0.360 5.360 14 O -0.423 6.423 15 C -0.158 4.158 16 C 0.026 3.974 17 O -0.247 6.247 18 C 0.006 3.994 19 C -0.011 4.011 20 C -0.578 4.578 21 H 0.093 0.907 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.799 3.201 25 H -0.178 1.178 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.184 0.816 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.250 0.750 35 H 0.257 0.743 36 H 0.263 0.737 37 H 0.172 0.828 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.611 25.365 0.014 29.784 hybrid contribution 1.830 -0.303 -0.001 1.854 sum -13.781 25.062 0.013 28.601 Atomic orbital electron populations 1.23412 0.76217 1.05517 1.02717 1.86198 1.23678 1.26526 1.88399 1.18837 0.89236 0.86125 1.00259 1.21238 1.01277 0.90056 1.06565 1.21254 0.93418 0.97768 0.96834 1.17993 0.93115 0.89491 1.06405 1.24607 0.99140 0.89634 0.92532 1.75022 1.26176 0.90483 1.15663 1.46484 1.10204 1.02314 1.70842 1.20183 0.87073 0.84798 0.77467 1.90793 1.14071 1.87330 1.46263 1.19446 0.86656 0.85716 0.77649 1.43348 1.12667 1.07314 1.72695 1.90864 1.14206 1.87561 1.49646 1.21273 1.01307 0.89515 1.03737 1.18603 0.89184 0.86730 1.02874 1.86218 1.20600 1.29175 1.88737 1.22929 0.75572 0.99948 1.00939 1.18964 0.94767 0.91491 0.95833 1.21445 0.91060 0.93715 1.51560 0.90697 1.26058 1.04800 0.94734 0.94389 1.70137 1.37501 0.98617 1.50925 0.85248 0.78112 0.79085 0.77667 1.17818 1.20505 1.20496 0.90983 0.90992 0.87023 0.81601 0.83506 0.82867 0.75017 0.74279 0.73663 0.82786 0.91567 0.91581 0.98599 0.98594 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -10.29 10.27 -78.49 -0.81 -11.10 16 3 C 0.10 3.07 6.71 22.66 0.15 3.22 16 4 C -0.17 -3.86 9.01 22.31 0.20 -3.66 16 5 C -0.07 -1.60 9.57 22.55 0.22 -1.38 16 6 C -0.07 -1.54 5.87 -20.14 -0.12 -1.66 16 7 C 0.15 2.84 10.75 87.37 0.94 3.77 16 8 N -0.27 -5.81 10.15 -52.19 -0.53 -6.34 16 9 N -0.55 -10.44 6.26 -174.64 -1.09 -11.53 16 10 C 0.52 10.06 8.00 87.19 0.70 10.76 16 11 O -0.51 -12.18 16.81 -3.53 -0.06 -12.24 16 12 C 0.53 7.88 8.15 87.19 0.71 8.59 16 13 N -0.79 -5.34 8.87 -174.69 -1.55 -6.89 16 14 O -0.55 -10.84 17.31 -3.33 -0.06 -10.89 16 15 C -0.14 -3.70 8.77 22.64 0.20 -3.51 16 16 C 0.07 2.43 6.69 22.53 0.15 2.58 16 17 O -0.33 -14.03 9.91 -79.45 -0.79 -14.82 16 18 C 0.08 3.37 4.68 71.98 0.34 3.71 16 19 C 0.03 1.44 5.34 29.85 0.16 1.60 16 20 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 21 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 22 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 23 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 24 Si 0.98 43.07 29.54 68.60 2.03 45.10 16 25 H -0.25 -10.44 7.11 99.48 0.71 -9.74 16 26 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 27 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 28 H 0.07 1.02 7.65 -2.38 -0.02 1.00 16 29 H 0.07 1.02 7.65 -2.39 -0.02 1.00 16 30 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.17 2.58 6.27 -2.91 -0.02 2.56 16 32 H 0.15 2.98 7.54 -2.91 -0.02 2.96 16 33 H 0.15 1.96 8.02 -2.92 -0.02 1.93 16 34 H 0.41 6.00 8.12 -213.32 -1.73 4.26 16 35 H 0.42 1.77 8.30 -92.71 -0.77 1.00 16 36 H 0.43 0.96 8.93 -92.71 -0.83 0.14 16 37 H 0.15 3.72 6.29 -2.91 -0.02 3.70 16 38 H 0.07 2.53 7.65 -2.39 -0.02 2.51 16 39 H 0.07 2.52 7.67 -2.39 -0.02 2.50 16 40 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -79.50 376.21 0.67 -78.83 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -2.21 Total: 10.21 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 5.45 Total: -3.86 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -2.89 Total: -81.22 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -1.71 Total: -49.06 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -79.50 0.67 -78.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115917473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.374 kcal (2) G-P(sol) polarization free energy of solvation -79.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds