Wall clock time and date at job start Tue Mar 31 2020 18:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.46840 * 2 1 4 4 C 1.34228 * 116.99580 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99684 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47087 * 174.30253 * 6 4 3 8 8 C 1.46903 * 111.00149 * 287.79348 * 7 6 4 9 9 C 1.50700 * 109.47057 * 294.70469 * 8 7 6 10 10 H 1.08004 * 119.99726 * 5.34985 * 9 8 7 11 11 C 1.37874 * 119.99802 * 185.35139 * 9 8 7 12 12 N 1.31513 * 120.00396 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99877 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46759 * 60.00212 * 13 11 9 15 15 H 1.48500 * 109.47383 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47204 * 300.00335 * 13 11 9 17 17 C 1.46900 * 110.99980 * 163.83921 * 7 6 4 18 18 C 1.50707 * 109.47008 * 190.00004 * 17 7 6 19 19 N 1.30498 * 125.65084 * 274.69008 * 18 17 7 20 20 C 1.34131 * 109.25706 * 180.26742 * 19 18 17 21 21 C 1.34676 * 108.01914 * 359.97438 * 20 19 18 22 22 C 1.50702 * 126.58813 * 179.97438 * 21 20 19 23 23 F 1.39904 * 109.46844 * 270.04073 * 22 21 20 24 24 F 1.39890 * 109.47000 * 30.04314 * 22 21 20 25 25 F 1.39897 * 109.46775 * 150.04535 * 22 21 20 26 26 N 1.35043 * 125.64848 * 94.99787 * 18 17 7 27 27 H 0.97005 * 126.40071 * 359.75661 * 26 18 17 28 28 H 1.09001 * 109.47285 * 300.00068 * 1 2 3 29 29 H 1.08998 * 109.46975 * 60.00345 * 1 2 3 30 30 H 1.09001 * 109.46851 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47285 * 239.99932 * 2 1 3 32 32 H 1.08998 * 109.46975 * 119.99655 * 2 1 3 33 33 H 1.08999 * 109.46905 * 54.30365 * 6 4 3 34 34 H 1.08998 * 109.47008 * 294.29976 * 6 4 3 35 35 H 1.09001 * 109.47296 * 54.70563 * 8 7 6 36 36 H 1.09005 * 109.47192 * 174.70167 * 8 7 6 37 37 H 0.96998 * 120.00099 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.47175 * 70.00119 * 17 7 6 39 39 H 1.09000 * 109.47147 * 309.99474 * 17 7 6 40 40 H 1.07996 * 125.99067 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 7 5.3814 2.8633 0.1358 8 6 5.7630 2.4684 1.4983 9 6 5.3503 3.5458 2.4678 10 1 4.7784 4.3939 2.1212 11 6 5.7030 3.4489 3.7971 12 7 6.3991 2.4160 4.2193 13 14 5.1921 4.7848 4.9987 14 1 3.7107 4.8850 5.0269 15 1 5.6918 4.4475 6.3559 16 1 5.7680 6.0843 4.5685 17 6 6.0106 4.1367 -0.2389 18 6 7.5040 3.9532 -0.3238 19 7 8.3383 4.0335 0.6765 20 6 9.5853 3.8209 0.2306 21 6 9.5213 3.6000 -1.0963 22 6 10.6804 3.3160 -2.0167 23 9 11.1800 4.5209 -2.5227 24 9 11.6883 2.6547 -1.3068 25 9 10.2488 2.5091 -3.0748 26 7 8.2013 3.6843 -1.4486 27 1 7.8351 3.5718 -2.3398 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5057 3.5026 0.8334 34 1 3.6684 3.4346 -0.9378 35 1 5.2646 1.5347 1.7591 36 1 6.8431 2.3297 1.5474 37 1 6.6475 2.3481 5.1544 38 1 5.7794 4.8913 0.5129 39 1 5.6286 4.4596 -1.2074 40 1 10.4832 3.8253 0.8307 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137019045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:47 Heat of formation + Delta-G solvation = -164.484942 kcal Electronic energy + Delta-G solvation = -29375.565796 eV Core-core repulsion = 24584.289624 eV Total energy + Delta-G solvation = -4791.276171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.19578 -47.73930 -47.68332 -41.99004 -39.97246 -37.13150 -35.74066 -32.54266 -32.41285 -31.70284 -31.06334 -28.32437 -27.53612 -25.40047 -24.25135 -23.12208 -21.76555 -21.24689 -20.59857 -19.88272 -18.84299 -18.57118 -18.18435 -17.29171 -16.60240 -16.35038 -16.09719 -15.49196 -15.35156 -14.80675 -14.59377 -14.53565 -14.17943 -14.14083 -14.06526 -13.88526 -13.84562 -13.66978 -13.54437 -13.37239 -12.87084 -12.66730 -12.38027 -12.25578 -11.98086 -11.48435 -11.43332 -11.07374 -10.97132 -10.90353 -10.47221 -10.22896 -10.07413 -9.87194 -9.80830 -9.67995 -9.60759 -8.55582 -8.33382 -7.47786 -5.95663 -4.03998 1.75155 2.38201 2.78905 2.93270 3.11968 3.33163 3.34566 3.38808 3.39934 3.80511 4.13657 4.36396 4.46083 4.63259 4.99344 5.01153 5.07152 5.16595 5.21352 5.36982 5.37807 5.47919 5.54541 5.64870 5.78643 5.83078 5.98625 6.04231 6.05078 6.26437 6.69257 6.81896 6.98228 7.37428 7.54876 7.73614 7.97482 8.03398 8.26033 8.27639 8.37795 9.00530 9.61601 11.11326 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.003895 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.292002 B = 7186.855282 C = 9403.332216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.367 6.367 4 C 0.466 3.534 5 O -0.487 6.487 6 C 0.069 3.931 7 N -0.528 5.528 8 C 0.184 3.816 9 C -0.551 4.551 10 H 0.054 0.946 11 C 0.076 3.924 12 N -0.882 5.882 13 Si 0.886 3.114 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.136 3.864 18 C 0.286 3.714 19 N -0.447 5.447 20 C 0.064 3.936 21 C -0.157 4.157 22 C 0.553 3.447 23 F -0.176 7.176 24 F -0.165 7.165 25 F -0.182 7.182 26 N -0.543 5.543 27 H 0.421 0.579 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.033 0.967 36 H 0.054 0.946 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.688 1.756 -13.837 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.285 6.285 4 C 0.307 3.693 5 O -0.371 6.371 6 C -0.061 4.061 7 N -0.254 5.254 8 C 0.059 3.941 9 C -0.590 4.590 10 H 0.072 0.928 11 C -0.128 4.128 12 N -0.519 5.519 13 Si 0.714 3.286 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.201 1.201 17 C 0.007 3.993 18 C 0.021 3.979 19 N -0.164 5.164 20 C -0.090 4.090 21 C -0.272 4.272 22 C 0.498 3.502 23 F -0.158 7.158 24 F -0.146 7.146 25 F -0.163 7.163 26 N -0.146 5.146 27 H 0.259 0.741 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.397 1.125 -13.176 13.297 hybrid contribution -0.120 0.715 -0.014 0.725 sum -1.517 1.840 -13.190 13.403 Atomic orbital electron populations 1.21784 0.93114 1.02533 1.03313 1.22894 0.94868 0.81002 1.02387 1.86472 1.25415 1.31697 1.84932 1.23690 0.79874 0.93135 0.72565 1.90649 1.60024 1.42897 1.43553 1.21391 0.90779 0.90187 1.03703 1.62292 1.04285 1.26675 1.32188 1.19973 0.98766 0.95791 0.79560 1.21433 1.35976 1.07535 0.94044 0.92794 1.24822 0.94525 0.95244 0.98194 1.69933 1.37176 1.28934 1.15859 0.86771 0.78584 0.82701 0.80566 1.20506 1.21346 1.20133 1.20372 0.83505 0.94116 1.01310 1.23431 0.96134 0.98251 0.80106 1.70789 0.98874 1.18928 1.27800 1.22407 0.97324 0.99678 0.89641 1.20674 0.85258 1.24371 0.96896 1.17069 0.81390 0.74087 0.77670 1.93233 1.88742 1.45783 1.88017 1.93217 1.62042 1.81011 1.78360 1.93192 1.89672 1.74195 1.59288 1.42927 1.05043 1.54471 1.12141 0.74091 0.91487 0.91759 0.90650 0.91706 0.91337 0.88925 0.88542 0.94859 0.92815 0.92853 0.88979 0.90645 0.80472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -5.90 10.22 -39.25 -0.40 -6.30 16 4 C 0.47 8.64 7.53 36.01 0.27 8.91 16 5 O -0.49 -10.65 14.91 -18.75 -0.28 -10.93 16 6 C 0.07 1.16 5.43 -4.97 -0.03 1.13 16 7 N -0.53 -10.39 4.29 -238.95 -1.03 -11.42 16 8 C 0.18 4.63 4.59 -4.97 -0.02 4.61 16 9 C -0.55 -14.33 7.33 -34.44 -0.25 -14.58 16 10 H 0.05 1.32 5.97 -52.48 -0.31 1.01 16 11 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 12 N -0.88 -26.03 13.29 55.43 0.74 -25.29 16 13 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C 0.14 2.27 5.36 -4.97 -0.03 2.25 16 18 C 0.29 5.05 6.90 -155.41 -1.07 3.98 16 19 N -0.45 -9.12 10.26 -10.81 -0.11 -9.23 16 20 C 0.06 1.09 11.48 -17.81 -0.20 0.88 16 21 C -0.16 -2.35 6.56 -81.60 -0.54 -2.88 16 22 C 0.55 7.21 3.55 36.01 0.13 7.34 16 23 F -0.18 -2.21 17.30 2.25 0.04 -2.17 16 24 F -0.17 -2.19 17.04 2.25 0.04 -2.15 16 25 F -0.18 -2.33 17.28 2.25 0.04 -2.29 16 26 N -0.54 -7.85 6.13 -6.54 -0.04 -7.89 16 27 H 0.42 4.71 8.96 -40.82 -0.37 4.35 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 33 H 0.09 1.65 6.46 -51.93 -0.34 1.32 16 34 H 0.10 1.22 7.80 -51.93 -0.41 0.81 16 35 H 0.03 0.95 6.58 -51.93 -0.34 0.61 16 36 H 0.05 1.52 6.61 -51.93 -0.34 1.18 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.09 1.68 6.31 -51.93 -0.33 1.35 16 39 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 40 H 0.18 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -33.07 355.86 -6.40 -39.47 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.51 Total: 3.12 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: -1.23 Total: 13.61 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.44 Total: -53.83 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.68 Total: -17.23 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.12 Total: -6.61 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.07 -6.40 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137019045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.012 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds