Wall clock time and date at job start Tue Mar 31 2020 18:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.46840 * 2 1 4 4 C 1.34228 * 116.99580 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99684 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47087 * 174.30253 * 6 4 3 8 8 C 1.46903 * 111.00149 * 287.79348 * 7 6 4 9 9 C 1.50700 * 109.47057 * 294.70469 * 8 7 6 10 10 H 1.08004 * 119.99726 * 5.34985 * 9 8 7 11 11 C 1.37874 * 119.99802 * 185.35139 * 9 8 7 12 12 N 1.31513 * 120.00396 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99877 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46759 * 60.00212 * 13 11 9 15 15 H 1.48500 * 109.47383 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47204 * 300.00335 * 13 11 9 17 17 C 1.46900 * 110.99980 * 163.83921 * 7 6 4 18 18 C 1.50707 * 109.47008 * 190.00004 * 17 7 6 19 19 N 1.30498 * 125.65084 * 274.69008 * 18 17 7 20 20 C 1.34131 * 109.25706 * 180.26742 * 19 18 17 21 21 C 1.34676 * 108.01914 * 359.97438 * 20 19 18 22 22 C 1.50702 * 126.58813 * 179.97438 * 21 20 19 23 23 F 1.39904 * 109.46844 * 270.04073 * 22 21 20 24 24 F 1.39890 * 109.47000 * 30.04314 * 22 21 20 25 25 F 1.39897 * 109.46775 * 150.04535 * 22 21 20 26 26 N 1.35043 * 125.64848 * 94.99787 * 18 17 7 27 27 H 0.97005 * 126.40071 * 359.75661 * 26 18 17 28 28 H 1.09001 * 109.47285 * 300.00068 * 1 2 3 29 29 H 1.08998 * 109.46975 * 60.00345 * 1 2 3 30 30 H 1.09001 * 109.46851 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47285 * 239.99932 * 2 1 3 32 32 H 1.08998 * 109.46975 * 119.99655 * 2 1 3 33 33 H 1.08999 * 109.46905 * 54.30365 * 6 4 3 34 34 H 1.08998 * 109.47008 * 294.29976 * 6 4 3 35 35 H 1.09001 * 109.47296 * 54.70563 * 8 7 6 36 36 H 1.09005 * 109.47192 * 174.70167 * 8 7 6 37 37 H 0.96998 * 120.00099 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.47175 * 70.00119 * 17 7 6 39 39 H 1.09000 * 109.47147 * 309.99474 * 17 7 6 40 40 H 1.07996 * 125.99067 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 7 5.3814 2.8633 0.1358 8 6 5.7630 2.4684 1.4983 9 6 5.3503 3.5458 2.4678 10 1 4.7784 4.3939 2.1212 11 6 5.7030 3.4489 3.7971 12 7 6.3991 2.4160 4.2193 13 14 5.1921 4.7848 4.9987 14 1 3.7107 4.8850 5.0269 15 1 5.6918 4.4475 6.3559 16 1 5.7680 6.0843 4.5685 17 6 6.0106 4.1367 -0.2389 18 6 7.5040 3.9532 -0.3238 19 7 8.3383 4.0335 0.6765 20 6 9.5853 3.8209 0.2306 21 6 9.5213 3.6000 -1.0963 22 6 10.6804 3.3160 -2.0167 23 9 11.1800 4.5209 -2.5227 24 9 11.6883 2.6547 -1.3068 25 9 10.2488 2.5091 -3.0748 26 7 8.2013 3.6843 -1.4486 27 1 7.8351 3.5718 -2.3398 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5057 3.5026 0.8334 34 1 3.6684 3.4346 -0.9378 35 1 5.2646 1.5347 1.7591 36 1 6.8431 2.3297 1.5474 37 1 6.6475 2.3481 5.1544 38 1 5.7794 4.8913 0.5129 39 1 5.6286 4.4596 -1.2074 40 1 10.4832 3.8253 0.8307 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137019045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:47 Heat of formation + Delta-G solvation = -187.147680 kcal Electronic energy + Delta-G solvation = -29376.548526 eV Core-core repulsion = 24584.289624 eV Total energy + Delta-G solvation = -4792.258901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.26362 -48.80358 -48.73933 -43.27673 -41.38454 -38.62204 -37.21637 -34.50351 -33.79802 -32.77825 -32.30188 -29.75501 -29.22959 -26.82674 -25.79680 -24.35233 -23.18645 -22.50149 -21.90520 -21.37333 -20.06790 -19.63198 -19.34168 -18.74773 -18.33752 -17.69938 -17.46868 -16.91857 -16.75390 -16.48499 -15.73704 -15.70535 -15.60008 -15.36256 -15.19696 -15.04986 -14.95561 -14.89899 -14.85906 -14.75358 -14.20610 -14.04153 -13.59779 -13.50515 -13.23634 -12.93062 -12.78601 -12.70626 -12.54323 -12.44626 -12.33001 -11.96139 -11.67928 -11.45018 -11.29626 -11.19796 -11.01983 -10.45786 -9.84989 -9.12749 -8.03914 -6.19622 0.49204 1.21891 1.36087 1.43109 1.46360 1.51659 1.65724 1.98388 2.01854 2.46417 2.67281 3.04561 3.26048 3.28699 3.33254 3.61471 3.91805 3.95587 4.03047 4.15404 4.21798 4.33340 4.38250 4.44515 4.65700 4.76231 4.87891 4.90810 4.96093 5.17797 5.24076 5.40758 5.49200 5.56598 5.87922 5.91641 6.17507 6.22252 6.34112 6.95621 6.96398 6.98849 7.50477 9.01762 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.003895 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.292002 B = 7186.855282 C = 9403.332216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.464 3.536 5 O -0.530 6.530 6 C 0.068 3.932 7 N -0.533 5.533 8 C 0.208 3.792 9 C -0.541 4.541 10 H 0.071 0.929 11 C 0.016 3.984 12 N -0.928 5.928 13 Si 0.951 3.049 14 H -0.266 1.266 15 H -0.294 1.294 16 H -0.269 1.269 17 C 0.137 3.863 18 C 0.271 3.729 19 N -0.501 5.501 20 C 0.038 3.962 21 C -0.141 4.141 22 C 0.566 3.434 23 F -0.169 7.169 24 F -0.165 7.165 25 F -0.177 7.177 26 N -0.525 5.525 27 H 0.438 0.562 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.153 0.847 35 H -0.011 1.011 36 H 0.017 0.983 37 H 0.258 0.742 38 H 0.077 0.923 39 H 0.133 0.867 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 3.333 -15.913 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.280 6.280 4 C 0.307 3.693 5 O -0.418 6.418 6 C -0.061 4.061 7 N -0.259 5.259 8 C 0.082 3.918 9 C -0.580 4.580 10 H 0.089 0.911 11 C -0.183 4.183 12 N -0.567 5.567 13 Si 0.777 3.223 14 H -0.190 1.190 15 H -0.220 1.220 16 H -0.194 1.194 17 C 0.009 3.991 18 C 0.006 3.994 19 N -0.220 5.220 20 C -0.115 4.115 21 C -0.258 4.258 22 C 0.510 3.490 23 F -0.150 7.150 24 F -0.146 7.146 25 F -0.158 7.158 26 N -0.130 5.130 27 H 0.280 0.720 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.170 0.830 35 H 0.007 0.993 36 H 0.035 0.965 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.151 0.849 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.936 2.727 -15.304 15.820 hybrid contribution 0.337 0.172 0.533 0.654 sum -2.599 2.899 -14.771 15.276 Atomic orbital electron populations 1.21798 0.89849 1.04321 1.03836 1.23218 0.97379 0.79666 1.01840 1.86472 1.24007 1.33307 1.84249 1.24114 0.80387 0.93390 0.71370 1.90636 1.61134 1.44315 1.45737 1.21589 0.88658 0.89545 1.06262 1.62050 1.06409 1.28932 1.28469 1.19374 0.95831 0.93898 0.82745 1.21790 1.34549 1.07644 0.94006 0.91089 1.25706 0.94842 0.97314 1.00445 1.70107 1.39370 1.31340 1.15924 0.85722 0.78790 0.79958 0.77832 1.19040 1.22006 1.19373 1.20549 0.82975 0.91885 1.03723 1.23515 0.96508 0.98870 0.80517 1.70684 1.00598 1.20627 1.30051 1.22672 0.97031 1.00903 0.90926 1.20852 0.85971 1.22357 0.96602 1.16729 0.80650 0.74274 0.77363 1.93251 1.88537 1.45410 1.87825 1.93225 1.61897 1.81044 1.78468 1.93209 1.89629 1.74073 1.58884 1.42793 1.04597 1.53194 1.12388 0.72026 0.91685 0.90435 0.88244 0.91171 0.93142 0.89488 0.82954 0.99323 0.96523 0.93314 0.90504 0.84898 0.79401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 10.29 71.98 0.74 -1.69 16 2 C 0.05 1.37 6.19 71.98 0.45 1.82 16 3 O -0.36 -11.29 10.22 -51.40 -0.53 -11.81 16 4 C 0.46 16.98 7.53 71.24 0.54 17.52 16 5 O -0.53 -23.77 14.91 21.97 0.33 -23.44 16 6 C 0.07 2.16 5.43 85.56 0.46 2.63 16 7 N -0.53 -20.57 4.29 -909.92 -3.91 -24.47 16 8 C 0.21 10.80 4.59 85.56 0.39 11.19 16 9 C -0.54 -28.42 7.33 25.60 0.19 -28.23 16 10 H 0.07 3.41 5.97 -2.91 -0.02 3.39 16 11 C 0.02 0.91 5.46 84.65 0.46 1.37 16 12 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 13 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 C 0.14 4.30 5.36 85.56 0.46 4.76 16 18 C 0.27 9.38 6.90 138.13 0.95 10.33 16 19 N -0.50 -20.82 10.26 -188.12 -1.93 -22.75 16 20 C 0.04 1.30 11.48 83.52 0.96 2.26 16 21 C -0.14 -4.08 6.56 40.95 0.27 -3.81 16 22 C 0.57 13.75 3.55 71.24 0.25 14.00 16 23 F -0.17 -3.88 17.30 44.97 0.78 -3.10 16 24 F -0.17 -4.17 17.04 44.97 0.77 -3.41 16 25 F -0.18 -4.13 17.28 44.97 0.78 -3.35 16 26 N -0.53 -14.31 6.13 -174.59 -1.07 -15.38 16 27 H 0.44 8.58 8.96 -92.70 -0.83 7.75 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 32 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 33 H 0.09 2.93 6.46 -2.39 -0.02 2.92 16 34 H 0.15 3.13 7.80 -2.39 -0.02 3.11 16 35 H -0.01 -0.68 6.58 -2.39 -0.02 -0.70 16 36 H 0.02 0.99 6.61 -2.38 -0.02 0.97 16 37 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.08 2.67 6.31 -2.39 -0.02 2.66 16 39 H 0.13 2.59 7.86 -2.39 -0.02 2.57 16 40 H 0.19 5.68 8.06 -2.91 -0.02 5.66 16 Total: -1.00 -76.04 355.86 3.93 -72.11 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.28 Total: 14.36 kcal Atomic # 6 Polarization: 26.02 SS G_CDS: 6.12 Total: 32.14 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -6.62 Total: -119.29 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.20 Total: -35.25 kcal Atomic # 9 Polarization: -12.18 SS G_CDS: 2.32 Total: -9.86 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -76.04 3.93 -72.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137019045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.040 kcal (2) G-P(sol) polarization free energy of solvation -76.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds