Wall clock time and date at job start Tue Mar 31 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45193 * 109.47415 * 2 1 4 4 C 1.34238 * 117.00262 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99304 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99777 * 180.02562 * 4 3 2 7 7 N 1.46905 * 109.46617 * 174.30030 * 6 4 3 8 8 C 1.46909 * 110.99678 * 287.82319 * 7 6 4 9 9 C 1.50694 * 109.47221 * 295.15789 * 8 7 6 10 10 H 1.07999 * 120.00099 * 5.35590 * 9 8 7 11 11 C 1.37881 * 120.00026 * 185.35916 * 9 8 7 12 12 N 1.31512 * 119.99816 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00032 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47256 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46805 * 119.99721 * 13 11 9 16 16 H 1.48498 * 109.47402 * 239.99852 * 13 11 9 17 17 C 1.46897 * 111.00182 * 163.87366 * 7 6 4 18 18 C 1.50694 * 109.47529 * 189.99719 * 17 7 6 19 19 C 1.35312 * 126.04361 * 260.02493 * 18 17 7 20 20 N 1.34943 * 107.75030 * 179.97438 * 19 18 17 21 21 H 0.97001 * 126.03631 * 179.97438 * 20 19 18 22 22 N 1.40080 * 107.92522 * 0.23958 * 20 19 18 23 23 C 1.30846 * 108.20465 * 359.59155 * 22 20 19 24 24 C 1.50694 * 125.89855 * 180.14315 * 23 22 20 25 25 F 1.39897 * 109.47647 * 270.30496 * 24 23 22 26 26 F 1.39908 * 109.47452 * 30.30468 * 24 23 22 27 27 F 1.39905 * 109.47163 * 150.30152 * 24 23 22 28 28 H 1.08998 * 109.46921 * 300.00642 * 1 2 3 29 29 H 1.09008 * 109.46904 * 60.00217 * 1 2 3 30 30 H 1.08996 * 109.47537 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47626 * 239.99924 * 2 1 3 32 32 H 1.09004 * 109.47289 * 120.00096 * 2 1 3 33 33 H 1.08998 * 109.47210 * 54.30570 * 6 4 3 34 34 H 1.08997 * 109.47146 * 294.29330 * 6 4 3 35 35 H 1.08996 * 109.47164 * 55.15909 * 8 7 6 36 36 H 1.09001 * 109.46528 * 175.15708 * 8 7 6 37 37 H 0.97001 * 120.00016 * 179.97438 * 12 11 9 38 38 H 1.09007 * 109.47233 * 69.99359 * 17 7 6 39 39 H 1.09006 * 109.46811 * 310.00041 * 17 7 6 40 40 H 1.08003 * 126.12629 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 7 5.3814 2.8629 0.1392 8 6 5.7619 2.4665 1.5017 9 6 5.3385 3.5378 2.4733 10 1 4.7613 4.3827 2.1277 11 6 5.6880 3.4394 3.8034 12 7 6.3905 2.4103 4.2242 13 14 5.1638 4.7677 5.0076 14 1 4.3878 5.8096 4.2884 15 1 4.3184 4.1667 6.0702 16 1 6.3681 5.3824 5.6217 17 6 6.0110 4.1367 -0.2335 18 6 7.5044 3.9535 -0.3174 19 6 8.4036 4.2992 0.6328 20 7 9.6306 3.9715 0.1768 21 1 10.4685 4.1047 0.6470 22 7 9.4811 3.4107 -1.0981 23 6 8.2060 3.3952 -1.3909 24 6 7.5987 2.8723 -2.6671 25 9 7.5273 3.9056 -3.6074 26 9 8.3930 1.8369 -3.1716 27 9 6.3119 2.3885 -2.4073 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5053 3.5020 0.8358 34 1 3.6693 3.4349 -0.9354 35 1 5.2696 1.5284 1.7580 36 1 6.8428 2.3356 1.5534 37 1 6.6367 2.3412 5.1599 38 1 5.7791 4.8906 0.5189 39 1 5.6297 4.4608 -1.2019 40 1 8.1794 4.7557 1.5856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141018244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:44 Heat of formation + Delta-G solvation = -148.982858 kcal Electronic energy + Delta-G solvation = -30571.196362 eV Core-core repulsion = 25780.592411 eV Total energy + Delta-G solvation = -4790.603950 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.73942 -47.31862 -47.14909 -41.14867 -39.81613 -36.98612 -35.60968 -32.66707 -32.10721 -31.57176 -30.71604 -27.87534 -26.76589 -26.19474 -24.30755 -23.04603 -21.60014 -21.23369 -20.19962 -19.66169 -18.16549 -17.84910 -17.57942 -17.00624 -16.77112 -16.54035 -16.18909 -15.44101 -14.98150 -14.82221 -14.23468 -14.20975 -14.07234 -13.86055 -13.67367 -13.58379 -13.32405 -13.28273 -13.22148 -13.09782 -12.73734 -12.42255 -12.37595 -12.03891 -11.75710 -11.35221 -11.27565 -11.12039 -10.99680 -10.85020 -10.64163 -10.48994 -10.13546 -10.05842 -9.73971 -9.68316 -9.59107 -8.51942 -8.35134 -7.25547 -6.11169 -4.22247 1.85372 2.50912 2.62642 2.97082 3.16284 3.17962 3.27160 3.28366 3.29901 4.08372 4.29678 4.39599 4.76362 5.01718 5.09332 5.13565 5.18289 5.26224 5.34796 5.43595 5.46833 5.69147 5.79019 5.89105 5.91097 5.92635 6.06331 6.15031 6.24326 6.41045 6.63347 6.96580 7.16890 7.33318 7.49566 7.57263 7.86861 7.89729 8.14347 8.19089 8.53557 8.90054 9.44316 10.92692 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.007939 B = 0.006016 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3525.922184 B = 4652.789108 C = 7482.330550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.465 3.535 5 O -0.485 6.485 6 C 0.070 3.930 7 N -0.520 5.520 8 C 0.186 3.814 9 C -0.555 4.555 10 H 0.059 0.941 11 C 0.068 3.932 12 N -0.884 5.884 13 Si 0.883 3.117 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.132 3.868 18 C -0.170 4.170 19 C 0.093 3.907 20 N -0.459 5.459 21 H 0.444 0.556 22 N -0.256 5.256 23 C 0.000 4.000 24 C 0.553 3.447 25 F -0.179 7.179 26 F -0.176 7.176 27 F -0.143 7.143 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.034 0.966 36 H 0.039 0.961 37 H 0.262 0.738 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 3.193 -9.413 10.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.306 3.694 5 O -0.369 6.369 6 C -0.059 4.059 7 N -0.244 5.244 8 C 0.061 3.939 9 C -0.594 4.594 10 H 0.077 0.923 11 C -0.135 4.135 12 N -0.522 5.522 13 Si 0.711 3.289 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.004 3.996 18 C -0.182 4.182 19 C -0.054 4.054 20 N -0.169 5.169 21 H 0.289 0.711 22 N -0.082 5.082 23 C -0.167 4.167 24 C 0.497 3.503 25 F -0.160 7.160 26 F -0.157 7.157 27 F -0.124 7.124 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.665 2.100 -10.013 10.252 hybrid contribution -0.870 1.172 1.990 2.468 sum -1.535 3.272 -8.023 8.800 Atomic orbital electron populations 1.21778 0.93247 1.02431 1.03251 1.22862 0.94764 0.81232 1.02306 1.86478 1.25705 1.31494 1.85057 1.23820 0.79708 0.93348 0.72511 1.90638 1.59979 1.42866 1.43467 1.21386 0.91443 0.89750 1.03343 1.62192 1.03615 1.28245 1.30369 1.19836 0.97693 0.95814 0.80581 1.21793 1.35322 1.08341 0.93934 0.92251 1.24934 0.94911 0.95437 0.98218 1.69980 1.37489 1.28913 1.15823 0.86687 0.78512 0.82111 0.81593 1.19681 1.21008 1.21047 1.20236 0.87395 0.92123 0.99846 1.19594 0.97135 1.08141 0.93297 1.22672 0.83685 0.99376 0.99691 1.46173 1.08870 1.48499 1.13352 0.71130 1.77162 1.16451 1.17795 0.96754 1.21873 0.93089 1.05203 0.96509 1.16939 0.76870 0.75147 0.81382 1.93193 1.96326 1.59209 1.67320 1.93197 1.74227 1.59762 1.88541 1.93355 1.37526 1.87841 1.93702 0.91585 0.91763 0.90747 0.91714 0.91495 0.89616 0.88656 0.94755 0.94265 0.92860 0.91878 0.91785 0.79102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 37.16 0.38 -1.17 16 2 C 0.06 0.89 6.19 37.16 0.23 1.12 16 3 O -0.37 -6.31 10.22 -39.28 -0.40 -6.71 16 4 C 0.46 9.13 7.54 36.01 0.27 9.40 16 5 O -0.49 -11.10 14.90 -18.75 -0.28 -11.38 16 6 C 0.07 1.28 5.43 -4.97 -0.03 1.25 16 7 N -0.52 -10.55 3.37 -238.96 -0.81 -11.35 16 8 C 0.19 4.54 4.61 -4.97 -0.02 4.51 16 9 C -0.55 -13.59 7.32 -34.44 -0.25 -13.84 16 10 H 0.06 1.40 5.97 -52.49 -0.31 1.08 16 11 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.88 -24.41 13.29 55.43 0.74 -23.68 16 13 Si 0.88 19.60 29.54 -169.99 -5.02 14.58 16 14 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 C 0.13 2.32 4.18 -4.98 -0.02 2.30 16 18 C -0.17 -2.97 4.66 -105.06 -0.49 -3.46 16 19 C 0.09 1.48 11.25 -17.23 -0.19 1.28 16 20 N -0.46 -6.56 7.36 30.44 0.22 -6.33 16 21 H 0.44 4.59 8.96 -182.61 -1.64 2.95 16 22 N -0.26 -4.35 12.63 33.67 0.43 -3.92 16 23 C 0.00 0.01 6.56 -82.40 -0.54 -0.53 16 24 C 0.55 9.33 3.50 36.00 0.13 9.46 16 25 F -0.18 -2.76 17.30 2.25 0.04 -2.72 16 26 F -0.18 -3.02 17.25 2.25 0.04 -2.98 16 27 F -0.14 -2.57 14.84 2.25 0.03 -2.53 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 32 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.09 1.60 6.42 -51.93 -0.33 1.27 16 34 H 0.10 1.42 7.81 -51.93 -0.41 1.02 16 35 H 0.03 0.97 6.58 -51.93 -0.34 0.63 16 36 H 0.04 1.04 6.81 -51.93 -0.35 0.69 16 37 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.06 1.12 6.33 -51.93 -0.33 0.79 16 39 H 0.06 0.99 7.51 -51.93 -0.39 0.60 16 40 H 0.19 2.84 8.06 -52.48 -0.42 2.42 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -31.38 352.46 -6.11 -37.48 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.77 Total: 2.27 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -0.63 Total: 11.97 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.58 Total: -45.29 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.68 Total: -18.09 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 0.11 Total: -8.24 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.38 -6.11 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141018244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.499 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds